NO02G01710.1, NO02G01710.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G01710.1
Unique Name	NO02G01710.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2193
Alignment location	chr2:501460..503652 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:501460..503652 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G01710.1 vs.
Match: EWM30533.1 (transcription initiation factor tfiid subunit 5 [Nannochloropsis gaditana])

HSP 1 Score: 935.3 bits (2416), Expect = 1.000e-268
Identity = 470/636 (73.90%), Postives = 519/636 (81.60%), Query Frame = 0

Query:    1 MEQAQQEERVLLWLKKRGYTQVAKHYEEDQAHAAEGSTEDNEEGSESSAPAEGSAPADEHLLCKRIGEANQNALLFRSIQLADPTLYHQSYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRGGRGEGDGSPRKNGRYEMAHGFTVRWRVYRQKDGDHRDDSSMPPFNASLVPKLHKLSSKYRQEAAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFRLAGQGPAGGEGGSSSV-------HASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGDGTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWSTNRTKPVRLLVGHYSDVSCVAWHPNCNYVVTGSWDKTVRLWDLGSGRCFRMYSGHFGPVTALVVSPDGQFVAGAGAGGRGEHGEENGVIRIWEVASGREVALLSGHRGGINRLTYSHDGKVLASAGEDETVCTWDVHGDFASLTASLPLTPQSRFSTKATRVMDVAFTKRNLLLACGPV 630
            ME AQQEERVL WLKKRGYT+VAKHYEEDQAHAA GS E+  E  +SS P+   A  DE LLCKRIGEANQ+ALLFRS++++DP LYH++YNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVE GM+EAAR F QTWGPDHAE YQ+ELRSL AVQRPD LTAGNGFVKRALTDK VLRLCS SYRLLQ FLSDHNLL IMEILNE+V VV+EER P PRF+VVT         GGRG+            ++H FTVRWR       D +DDSS PP+NA L  KL  L++K RQE A+G ADP  PTVLM +LTNTYDGC VARMT DATQLAAGFHDRAVRVFRLAG+GP G E G+ S         A  GPLIMRGHSQPV+G+SWAPEQQHLLSAS DGTVRLWDVAASRNVCVYR+PTDVPVWDV+F+PVGH+FASGSYDRV RVW TNRT+PVRLLVGHYSDVSCVAWHPNC+Y+VTGSWDKTVRLWDLGSGRCFR+YSGHFGPVTAL VSPDGQF+AGAG G  G  G E+GVIRIW+VASGREVA+L GH G ++RL YS DG VLAS G D TV TWD++GDFASL +S+ L P S F TKAT V+DV FTKRNLLLA GP+
Sbjct:    1 MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPS--GAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVT---------GGRGQ------------ISHAFTVRWRATGLGGSDVKDDSSRPPYNAPLFQKLEALAAKTRQEIAMGVADPGNPTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLAGEGPVGMENGNGSKLHSDGGEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLG--GGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDMNGDFASLMSSVSLAPHSTFHTKATPVLDVTFTKRNLLLASGPI 611

The following BLAST results are available for this feature:

BLAST of NO02G01710.1 vs.

BLAST of NO02G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30533.1	1.000e-268	73.90	transcription initiation factor tfiid subunit 5 [N...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G01710	NO02G01710	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01710.1	NO02G01710.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01710.1.cds1	NO02G01710.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:501460..503652-
coding sequence from alignment at chr2:501460..503652-

mRNA sequence

>NO02G01710.1 ID=NO02G01710.1|Name=NO02G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp
ACAGTTATCACTATAACCCGCTTCAGCCGACGTCACGCCCGCCTCGTCTT
GCCTTCCCTTTTCACGGCCGTTGCCCGCACAGCAACGGCCTTGCCATCAT
CGCAACGCGAACCAGTCGCGTCAGGCAGCCTCCACCATGGAGCAGGCACA
GCAGGAAGAACGGGTGCTGCTATGGCTGAAGAAGCGAGGTTACACCCAGG
TGGCTAAGCATTACGAGGAAGACCAAGCGCACGCCGCGGAAGGCAGCACT
GAAGATAATGAGGAGGGCAGCGAGAGCTCAGCTCCCGCCGAGGGTAGTGC
CCCGGCAGACGAGCATCTCTTGTGCAAGCGCATAGGAGAAGCGAATCAAA
ATGCTTTACTCTTTCGTTCTATCCAGTTGGCGGACCCGACGCTCTACCAT
CAAAGCTACAACGAGCTGCAGACCTGGACATGCAACGCCTTAGAGGCATA
CAAGCCCGAGCTCCTCACCGTGGCCTTCCCTGTCTTCGTCCACAGCTATC
TCAAGCTCGTCGAACATGGCATGGTCGAAGCAGCGCGAATATTTTTTCAA
ACATGGGGACCAGACCATGCCGAGGCCTATCAAATGGAGCTCCGCAGCCT
GGGAGCCGTACAGCGCCCCGACCAATTGACAGCTGGGAACGGGTTCGTCA
AACGCGCATTGACTGACAAGTTAGTCCTTCGTCTCTGCAGTACCAGCTAC
CGCCTCTTGCAAGGCTTTTTGAGCGACCACAATCTTCTTTCGATCATGGA
GATTCTGAATGAGCGGGTTCAGGTTGTGATTGAGGAAAGGGGCCCTCGAC
CTCGCTTTGAAGTAGTCACCTTCCGAGACGACGGCGTGGCCGGCCGTGGA
GGACGGGGAGAAGGAGATGGTTCGCCGCGTAAGAATGGGCGATATGAGAT
GGCCCACGGGTTTACTGTCCGATGGCGGGTGTACCGACAGAAGGACGGCG
ATCACCGAGATGACAGCAGCATGCCTCCTTTTAATGCCTCGCTCGTCCCA
AAACTTCACAAGCTCTCCTCAAAATATCGCCAAGAGGCAGCCATTGGCAC
CGCGGACCCCACTCGCCCTACCGTCTTAATGGGCACCTTGACCAATACAT
ACGATGGGTGCATCGTGGCGCGAATGACAGAGGACGCAACTCAACTCGCC
GCTGGCTTTCACGACCGGGCCGTGCGTGTTTTCCGCCTGGCAGGGCAGGG
CCCCGCAGGAGGCGAGGGAGGGAGCAGTAGCGTGCATGCAAGTAGTGGCC
CACTTATTATGAGAGGGCATTCCCAACCGGTGTATGGCCTGAGCTGGGCG
CCGGAACAGCAGCATTTGCTCTCGGCGTCCGGGGATGGTACGGTCAGGCT
GTGGGACGTTGCGGCTTCGAGAAATGTGTGTGTGTATCGGGCGCCGACGG
ATGTGCCGGTGTGGGATGTGGCATTCTCGCCGGTCGGACATTTCTTTGCG
AGCGGGTCGTATGATCGGGTGGCGAGGGTGTGGAGTACGAATAGAACTAA
GCCGGTGCGATTGCTGGTCGGGCATTACTCTGATGTGAGTTGTGTGGCGT
GGCACCCTAATTGCAATTACGTGGTGACAGGCTCGTGGGATAAGACGGTG
CGATTGTGGGATTTGGGCAGTGGTAGATGTTTCCGCATGTATTCGGGGCA
TTTTGGGCCCGTGACGGCCTTGGTAGTCAGTCCAGATGGTCAGTTTGTGG
CGGGAGCGGGGGCGGGTGGCAGGGGAGAGCACGGGGAAGAGAATGGGGTG
ATTCGAATTTGGGAGGTTGCCTCGGGAAGGGAGGTAGCATTGTTAAGTGG
GCATAGAGGGGGTATCAATCGGTTGACGTACAGTCATGATGGGAAGGTAC
TTGCGAGCGCGGGGGAAGATGAAACGGTGTGCACTTGGGATGTTCATGGG
GACTTTGCGAGTTTGACAGCATCCTTGCCCTTGACGCCACAGAGTCGGTT
CTCGACCAAGGCCACCCGGGTGATGGATGTAGCATTCACGAAGCGGAATT
TGTTGCTAGCGTGTGGGCCAGTTTCGGGGTAAGGTGAGGACGAGGCAGGG
GGTGAGGGAGGGGAGGGGAGAGCAACTAACTGTGCTGCGTTTGTTTGAAA
CAGAATAATGTACGGAAGAAAGATAACGATGCGCTGATCAAAACGACAAA
GAATCAAGTAGTTACCAGAGAAAAGACAAAAAACGGGACAAAA

protein sequence of NO02G01710.1

>NO02G01710.1-protein ID=NO02G01710.1-protein|Name=NO02G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MEQAQQEERVLLWLKKRGYTQVAKHYEEDQAHAAEGSTEDNEEGSESSAP
AEGSAPADEHLLCKRIGEANQNALLFRSIQLADPTLYHQSYNELQTWTCN
ALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQM
ELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNL
LSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRGGRGEGDGSPRKN
GRYEMAHGFTVRWRVYRQKDGDHRDDSSMPPFNASLVPKLHKLSSKYRQE
AAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFR
LAGQGPAGGEGGSSSVHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGD
GTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWS
TNRTKPVRLLVGHYSDVSCVAWHPNCNYVVTGSWDKTVRLWDLGSGRCFR
MYSGHFGPVTALVVSPDGQFVAGAGAGGRGEHGEENGVIRIWEVASGREV
ALLSGHRGGINRLTYSHDGKVLASAGEDETVCTWDVHGDFASLTASLPLT
PQSRFSTKATRVMDVAFTKRNLLLACGPVSG*

mRNA from alignment at chr2:501460..503652-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G01710.1 ID=NO02G01710.1|Name=NO02G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp|location=Sequence derived from alignment at chr2:501460..503652- (Nannochloropsis oceanica)
ACAGTTATCACTATAACCCGCTTCAGCCGACGTCACGCCCGCCTCGTCTT
GCCTTCCCTTTTCACGGCCGTTGCCCGCACAGCAACGGCCTTGCCATCAT
CGCAACGCGAACCAGTCGCGTCAGGCAGCCTCCACCATGGAGCAGGCACA
GCAGGAAGAACGGGTGCTGCTATGGCTGAAGAAGCGAGGTTACACCCAGG
TGGCTAAGCATTACGAGGAAGACCAAGCGCACGCCGCGGAAGGCAGCACT
GAAGATAATGAGGAGGGCAGCGAGAGCTCAGCTCCCGCCGAGGGTAGTGC
CCCGGCAGACGAGCATCTCTTGTGCAAGCGCATAGGAGAAGCGAATCAAA
ATGCTTTACTCTTTCGTTCTATCCAGTTGGCGGACCCGACGCTCTACCAT
CAAAGCTACAACGAGCTGCAGACCTGGACATGCAACGCCTTAGAGGCATA
CAAGCCCGAGCTCCTCACCGTGGCCTTCCCTGTCTTCGTCCACAGCTATC
TCAAGCTCGTCGAACATGGCATGGTCGAAGCAGCGCGAATATTTTTTCAA
ACATGGGGACCAGACCATGCCGAGGCCTATCAAATGGAGCTCCGCAGCCT
GGGAGCCGTACAGCGCCCCGACCAATTGACAGCTGGGAACGGGTTCGTCA
AACGCGCATTGACTGACAAGTTAGTCCTTCGTCTCTGCAGTACCAGCTAC
CGCCTCTTGCAAGGCTTTTTGAGCGACCACAATCTTCTTTCGATCATGGA
GATTCTGAATGAGCGGGTTCAGGTTGTGATTGAGGAAAGGGGCCCTCGAC
CTCGCTTTGAAGTAGTCACCTTCCGAGACGACGGCGTGGCCGGCCGTGGA
GGACGGGGAGAAGGAGATGGTTCGCCGCGTAAGAATGGGCGATATGAGAT
GGCCCACGGGTTTACTGTCCGATGGCGGGTGTACCGACAGAAGGACGGCG
ATCACCGAGATGACAGCAGCATGCCTCCTTTTAATGCCTCGCTCGTCCCA
AAACTTCACAAGCTCTCCTCAAAATATCGCCAAGAGGCAGCCATTGGCAC
CGCGGACCCCACTCGCCCTACCGTCTTAATGGGCACCTTGACCAATACAT
ACGATGGGTGCATCGTGGCGCGAATGACAGAGGACGCAACTCAACTCGCC
GCTGGCTTTCACGACCGGGCCGTGCGTGTTTTCCGCCTGGCAGGGCAGGG
CCCCGCAGGAGGCGAGGGAGGGAGCAGTAGCGTGCATGCAAGTAGTGGCC
CACTTATTATGAGAGGGCATTCCCAACCGGTGTATGGCCTGAGCTGGGCG
CCGGAACAGCAGCATTTGCTCTCGGCGTCCGGGGATGGTACGGTCAGGCT
GTGGGACGTTGCGGCTTCGAGAAATGTGTGTGTGTATCGGGCGCCGACGG
ATGTGCCGGTGTGGGATGTGGCATTCTCGCCGGTCGGACATTTCTTTGCG
AGCGGGTCGTATGATCGGGTGGCGAGGGTGTGGAGTACGAATAGAACTAA
GCCGGTGCGATTGCTGGTCGGGCATTACTCTGATGTGAGTTGTGTGGCGT
GGCACCCTAATTGCAATTACGTGGTGACAGGCTCGTGGGATAAGACGGTG
CGATTGTGGGATTTGGGCAGTGGTAGATGTTTCCGCATGTATTCGGGGCA
TTTTGGGCCCGTGACGGCCTTGGTAGTCAGTCCAGATGGTCAGTTTGTGG
CGGGAGCGGGGGCGGGTGGCAGGGGAGAGCACGGGGAAGAGAATGGGGTG
ATTCGAATTTGGGAGGTTGCCTCGGGAAGGGAGGTAGCATTGTTAAGTGG
GCATAGAGGGGGTATCAATCGGTTGACGTACAGTCATGATGGGAAGGTAC
TTGCGAGCGCGGGGGAAGATGAAACGGTGTGCACTTGGGATGTTCATGGG
GACTTTGCGAGTTTGACAGCATCCTTGCCCTTGACGCCACAGAGTCGGTT
CTCGACCAAGGCCACCCGGGTGATGGATGTAGCATTCACGAAGCGGAATT
TGTTGCTAGCGTGTGGGCCAGTTTCGGGGTAAGGTGAGGACGAGGCAGGG
GGTGAGGGAGGGGAGGGGAGAGCAACTAACTGTGCTGCGTTTGTTTGAAA
CAGAATAATGTACGGAAGAAAGATAACGATGCGCTGATCAAAACGACAAA
GAATCAAGTAGTTACCAGAGAAAAGACAAAAAACGGGACAAAA

Coding sequence (CDS) from alignment at chr2:501460..503652-

>NO02G01710.1 ID=NO02G01710.1|Name=NO02G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at chr2:501460..503652- (Nannochloropsis oceanica)
ATGGAGCAGGCACAGCAGGAAGAACGGGTGCTGCTATGGCTGAAGAAGCG
AGGTTACACCCAGGTGGCTAAGCATTACGAGGAAGACCAAGCGCACGCCG
CGGAAGGCAGCACTGAAGATAATGAGGAGGGCAGCGAGAGCTCAGCTCCC
GCCGAGGGTAGTGCCCCGGCAGACGAGCATCTCTTGTGCAAGCGCATAGG
AGAAGCGAATCAAAATGCTTTACTCTTTCGTTCTATCCAGTTGGCGGACC
CGACGCTCTACCATCAAAGCTACAACGAGCTGCAGACCTGGACATGCAAC
GCCTTAGAGGCATACAAGCCCGAGCTCCTCACCGTGGCCTTCCCTGTCTT
CGTCCACAGCTATCTCAAGCTCGTCGAACATGGCATGGTCGAAGCAGCGC
GAATATTTTTTCAAACATGGGGACCAGACCATGCCGAGGCCTATCAAATG
GAGCTCCGCAGCCTGGGAGCCGTACAGCGCCCCGACCAATTGACAGCTGG
GAACGGGTTCGTCAAACGCGCATTGACTGACAAGTTAGTCCTTCGTCTCT
GCAGTACCAGCTACCGCCTCTTGCAAGGCTTTTTGAGCGACCACAATCTT
CTTTCGATCATGGAGATTCTGAATGAGCGGGTTCAGGTTGTGATTGAGGA
AAGGGGCCCTCGACCTCGCTTTGAAGTAGTCACCTTCCGAGACGACGGCG
TGGCCGGCCGTGGAGGACGGGGAGAAGGAGATGGTTCGCCGCGTAAGAAT
GGGCGATATGAGATGGCCCACGGGTTTACTGTCCGATGGCGGGTGTACCG
ACAGAAGGACGGCGATCACCGAGATGACAGCAGCATGCCTCCTTTTAATG
CCTCGCTCGTCCCAAAACTTCACAAGCTCTCCTCAAAATATCGCCAAGAG
GCAGCCATTGGCACCGCGGACCCCACTCGCCCTACCGTCTTAATGGGCAC
CTTGACCAATACATACGATGGGTGCATCGTGGCGCGAATGACAGAGGACG
CAACTCAACTCGCCGCTGGCTTTCACGACCGGGCCGTGCGTGTTTTCCGC
CTGGCAGGGCAGGGCCCCGCAGGAGGCGAGGGAGGGAGCAGTAGCGTGCA
TGCAAGTAGTGGCCCACTTATTATGAGAGGGCATTCCCAACCGGTGTATG
GCCTGAGCTGGGCGCCGGAACAGCAGCATTTGCTCTCGGCGTCCGGGGAT
GGTACGGTCAGGCTGTGGGACGTTGCGGCTTCGAGAAATGTGTGTGTGTA
TCGGGCGCCGACGGATGTGCCGGTGTGGGATGTGGCATTCTCGCCGGTCG
GACATTTCTTTGCGAGCGGGTCGTATGATCGGGTGGCGAGGGTGTGGAGT
ACGAATAGAACTAAGCCGGTGCGATTGCTGGTCGGGCATTACTCTGATGT
GAGTTGTGTGGCGTGGCACCCTAATTGCAATTACGTGGTGACAGGCTCGT
GGGATAAGACGGTGCGATTGTGGGATTTGGGCAGTGGTAGATGTTTCCGC
ATGTATTCGGGGCATTTTGGGCCCGTGACGGCCTTGGTAGTCAGTCCAGA
TGGTCAGTTTGTGGCGGGAGCGGGGGCGGGTGGCAGGGGAGAGCACGGGG
AAGAGAATGGGGTGATTCGAATTTGGGAGGTTGCCTCGGGAAGGGAGGTA
GCATTGTTAAGTGGGCATAGAGGGGGTATCAATCGGTTGACGTACAGTCA
TGATGGGAAGGTACTTGCGAGCGCGGGGGAAGATGAAACGGTGTGCACTT
GGGATGTTCATGGGGACTTTGCGAGTTTGACAGCATCCTTGCCCTTGACG
CCACAGAGTCGGTTCTCGACCAAGGCCACCCGGGTGATGGATGTAGCATT
CACGAAGCGGAATTTGTTGCTAGCGTGTGGGCCAGTTTCGGGGTAA

Synonyms

Publications