NO02G01600, NO02G01600 (gene) Nannochloropsis oceanica

Overview
NameNO02G01600
Unique NameNO02G01600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2711
Alignment locationchr2:471160..473870 +

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Properties
Property NameValue
DescriptionProtein of unknown function (DUF1279)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:471160..473870 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009688DUF1279
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO02G01600 vs. NCBI_GenBank
Match: EWM30460.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 228.4 bits (581), Expect = 3.400e-56
Identity = 131/185 (70.81%), Postives = 147/185 (79.46%), Query Frame = 0
Query:  154 AIEASIVLLVLLCLSSTRAFVPGLPRQSISAWPSPSFKMQPSLQQQQLSRSTIGSTQLSAVDDADEVTKKFGLEAGLFSIFKSGANKEGKAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPA 339
            A E  ++L ++  L ST AFVP   R++    PS          QQQ+   ++  ++L A+DDADEVTKK+GLEAGLFSIFKSG NKEGK VQAKDLLAKYGSAYL TSISLS VSF LCY LVTAGVDVP+LLA+VGITAS+QTETAGTVALAYAAHKAASPIRFPPTVALTPFVANA GKKPA
Sbjct:   91 ASELVLILALVSSLPSTMAFVPTATRRNPLVRPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKKPA 275          
BLAST of NO02G01600 vs. NCBI_GenBank
Match: XP_002973314.2 (uncharacterized protein LOC9641381 [Selaginella moellendorffii])

HSP 1 Score: 163.3 bits (412), Expect = 1.300e-36
Identity = 99/177 (55.93%), Postives = 124/177 (70.06%), Query Frame = 0
Query:  165 LCLSSTRAFVPGLPRQSISAWPSPSFKMQPSLQQQQLSRSTIGSTQLSAVDDADEVTKKFGLEAGLFSIFKSGANKEG-KAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPAAE 341
            LC+S TR      PR+  SA           + +++ ++ ++ +  ++  D  +EVT+KFGLEAGL+ IF S  N+ G K VQAK+LLA+YG AYL TSISLS VSF+LCY L+ AGVDVPSLLAKVGI ++   E  GT+ALAYAAHKAASPIRFPPTVALTP VA+ FGKK   E
Sbjct:   28 LCVSKTRR-----PRRICSA----------VMNKEKETKQSVETDAVNKDDGVEEVTRKFGLEAGLWKIFSSKKNESGEKKVQAKELLARYGGAYLVTSISLSAVSFALCYLLINAGVDVPSLLAKVGIQSNETGEKVGTLALAYAAHKAASPIRFPPTVALTPIVASWFGKKNKQE 189          
BLAST of NO02G01600 vs. NCBI_GenBank
Match: XP_002976590.2 (uncharacterized protein LOC9649327 [Selaginella moellendorffii])

HSP 1 Score: 163.3 bits (412), Expect = 1.300e-36
Identity = 99/177 (55.93%), Postives = 124/177 (70.06%), Query Frame = 0
Query:  165 LCLSSTRAFVPGLPRQSISAWPSPSFKMQPSLQQQQLSRSTIGSTQLSAVDDADEVTKKFGLEAGLFSIFKSGANKEG-KAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPAAE 341
            LC+S TR      PR+  SA           + +++ ++ ++ +  ++  D  +EVT+KFGLEAGL+ IF S  N+ G K VQAK+LLA+YG AYL TSISLS VSF+LCY L+ AGVDVPSLLAKVGI ++   E  GT+ALAYAAHKAASPIRFPPTVALTP VA+ FGKK   E
Sbjct:   28 LCVSKTRR-----PRRICSA----------VMNKEKETKQSVETDAVNKDDGVEEVTRKFGLEAGLWKIFSSKKNESGEKKVQAKELLARYGGAYLVTSISLSAVSFALCYLLINAGVDVPSLLAKVGIQSNETGEKVGTLALAYAAHKAASPIRFPPTVALTPIVASWFGKKNEQE 189          
BLAST of NO02G01600 vs. NCBI_GenBank
Match: EFJ22259.1 (hypothetical protein SELMODRAFT_105406 [Selaginella moellendorffii])

HSP 1 Score: 162.2 bits (409), Expect = 3.000e-36
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 0
Query:  196 LQQQQLSRSTIGSTQLSAVDDADEVTKKFGLEAGLFSIFKSGANKEG-KAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPAAE 341
            + +++ ++ ++ +  ++  D  +EVT+KFGLEAGL+ IF S  N+ G K VQAK+LLA+YG AYL TSISLS VSF+LCY L+ AGVDVPSLLAKVGI ++   E  GT+ALAYAAHKAASPIRFPPTVALTP VA+ FGKK   E
Sbjct:    1 MNKEKETKQSVETDAVNKDDGVEEVTRKFGLEAGLWKIFSSKKNESGEKKVQAKELLARYGGAYLVTSISLSAVSFALCYLLINAGVDVPSLLAKVGIQSNETGEKVGTLALAYAAHKAASPIRFPPTVALTPIVASWFGKKNEQE 146          
BLAST of NO02G01600 vs. NCBI_GenBank
Match: EFJ25688.1 (hypothetical protein SELMODRAFT_58827, partial [Selaginella moellendorffii])

HSP 1 Score: 159.8 bits (403), Expect = 1.500e-35
Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 0
Query:  218 DEVTKKFGLEAGLFSIFKSGANKEG-KAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPAAE 341
            +EVT+KFGLEAGL+ IF S  N+ G K VQAK+LLA+YG AYL TSISLS VSF+LCY L+ AGVDVPSLLAKVGI ++   E  GT+ALAYAAHKAASPIRFPPTVALTP VA+ FGKK   E
Sbjct:    1 EEVTRKFGLEAGLWKIFSSKKNESGEKKVQAKELLARYGGAYLVTSISLSAVSFALCYLLINAGVDVPSLLAKVGIQSNETGEKVGTLALAYAAHKAASPIRFPPTVALTPIVASWFGKKNKQE 124          
BLAST of NO02G01600 vs. NCBI_GenBank
Match: XP_008375956.1 (PREDICTED: uncharacterized protein LOC103439188 [Malus domestica])

HSP 1 Score: 159.8 bits (403), Expect = 1.500e-35
Identity = 91/139 (65.47%), Postives = 103/139 (74.10%), Query Frame = 0
Query:  209 TQLSAVDDADEVTKKFGLEAGLFSIF------KSGANKEGKAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPAAED 342
            T+  + D ADEVTKK+GLEAGL+ IF      K G  K+ K  +AK LLAKYG AYLATSI LS++SFSLCYAL++AGVDV +LL KVGI+ S   E  GT ALAYAAHKAASPIRFPPTVALTP VA   GKK   ED
Sbjct:   55 TKTPSADSADEVTKKYGLEAGLWKIFSSREEGKEGEEKKSKGDEAKKLLAKYGGAYLATSIVLSLISFSLCYALISAGVDVQALLQKVGISGSETGERVGTFALAYAAHKAASPIRFPPTVALTPIVARWIGKKVEKED 193          
BLAST of NO02G01600 vs. NCBI_GenBank
Match: XP_022009033.1 (uncharacterized protein LOC110908403 [Helianthus annuus] >OTF97304.1 Protein of unknown function (DUF1279) [Helianthus annuus])

HSP 1 Score: 158.7 bits (400), Expect = 3.300e-35
Identity = 88/133 (66.17%), Postives = 101/133 (75.94%), Query Frame = 0
Query:  209 TQLSAVDDADEVTKKFGLEAGLFSIFKS-----GANKEGKAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKK 337
            T  S+    DE+TKK+GLE GL+ IF S     G  K+ K  QAK+LL KYG AYLATSI+LS++SFSLCYAL+TAGVDVP+LL KVGI+A    E  GT ALAYAAHKAASPIRFPPTVALTP VA+  GKK
Sbjct:   51 TNTSSSSSPDEITKKYGLEVGLWKIFSSKEDEEGDGKKSKGDQAKELLTKYGGAYLATSITLSLISFSLCYALITAGVDVPALLQKVGISAGETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKK 183          
BLAST of NO02G01600 vs. NCBI_GenBank
Match: XP_009374783.1 (PREDICTED: uncharacterized protein LOC103963675 [Pyrus x bretschneideri])

HSP 1 Score: 156.4 bits (394), Expect = 1.600e-34
Identity = 92/138 (66.67%), Postives = 103/138 (74.64%), Query Frame = 0
Query:  209 TQLSAVDDADEVTKKFGLEAGLFSIFKS-GANKEG----KAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPAAED 342
            T+  + D ADEVTKK+GLEAGL+ IF S    KEG    K  +AK LLAKYG AYLATSI LS++SFSLCYAL++AGVDV +LL KVGI+ S   E  GT ALAYAAHKAASPIRFPPTVALTP VA   GKK   ED
Sbjct:   55 TKAPSADSADEVTKKYGLEAGLWKIFSSREEGKEGEEKSKGDEAKKLLAKYGGAYLATSIILSLISFSLCYALISAGVDVQALLQKVGISGSETGERVGTFALAYAAHKAASPIRFPPTVALTPIVARWIGKKVEKED 192          
BLAST of NO02G01600 vs. NCBI_GenBank
Match: PON65404.1 (hypothetical protein PanWU01x14_117180 [Parasponia andersonii])

HSP 1 Score: 155.6 bits (392), Expect = 2.800e-34
Identity = 87/132 (65.91%), Postives = 102/132 (77.27%), Query Frame = 0
Query:  217 ADEVTKKFGLEAGLFSIFKS-------GANKEGKAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPAAED 342
            A+E+TKKFGLEAGL+ IF S       G  K+ K  +AK+LLAKYG AYLATSI+LS++SFSLCY L++AGVDV +LL KVGI+A+   E  GT ALAYAAHKAASPIRFPPTVALTP VA+  GKK   ED
Sbjct:   67 AEEITKKFGLEAGLWKIFSSKGEGNEGGEKKKSKGDEAKELLAKYGGAYLATSITLSLISFSLCYVLISAGVDVQALLQKVGISANETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGKKVDKED 198          
BLAST of NO02G01600 vs. NCBI_GenBank
Match: XP_015058847.1 (PREDICTED: uncharacterized protein LOC107004934 [Solanum pennellii])

HSP 1 Score: 155.2 bits (391), Expect = 3.600e-34
Identity = 87/130 (66.92%), Postives = 98/130 (75.38%), Query Frame = 0
Query:  214 VDDADEVTKKFGLEAGLFSIFKS-------GANKEGKAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKK 337
            V  ADE+TKKFGLEAGL+ IF S         +K+ K  QAK+LLAKYG AYLATSI+LS++SF LCYAL+ +GVDV SLL KVGI+     E  GT ALAYAAHKAASPIRFPPTVALTP VAN  GKK
Sbjct:   57 VKSADEITKKFGLEAGLWKIFSSKEDGDEENKDKKSKGDQAKELLAKYGGAYLATSITLSLISFGLCYALINSGVDVQSLLQKVGISTDETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVANWIGKK 186          
The following BLAST results are available for this feature:
BLAST of NO02G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30460.13.400e-5670.81transmembrane protein [Nannochloropsis gaditana][more]
XP_002973314.21.300e-3655.93uncharacterized protein LOC9641381 [Selaginella mo... [more]
XP_002976590.21.300e-3655.93uncharacterized protein LOC9649327 [Selaginella mo... [more]
EFJ22259.13.000e-3661.64hypothetical protein SELMODRAFT_105406 [Selaginell... [more]
EFJ25688.11.500e-3571.77hypothetical protein SELMODRAFT_58827, partial [Se... [more]
XP_008375956.11.500e-3565.47PREDICTED: uncharacterized protein LOC103439188 [M... [more]
XP_022009033.13.300e-3566.17uncharacterized protein LOC110908403 [Helianthus a... [more]
XP_009374783.11.600e-3466.67PREDICTED: uncharacterized protein LOC103963675 [P... [more]
PON65404.12.800e-3465.91hypothetical protein PanWU01x14_117180 [Parasponia... [more]
XP_015058847.13.600e-3466.92PREDICTED: uncharacterized protein LOC107004934 [S... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01600.1NO02G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573972gene_742Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g44gene166Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01600.1NO02G01600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01600 ID=NO02G01600|Name=NO02G01600|organism=Nannochloropsis oceanica|type=gene|length=2711bp
TTTCTTCCAAGCACGCTTTTAATCACTTACTTTTCTTTCTCGCTTCGTAC
TTAAGACCAATTCACACGTCTTTATGCCGTCTGTCGTTACTCCTCCCCAC
CCTTCTACATTTGGCTATAGAACTCAGTGCATTCAATCCCATTAACAAAC
ACATCCTCCTTTCACCAGGGTATCATTCGTCGATGCCGATAAAAAAATCC
TCCTGGACATTCGTCCGGGTGCAGCGCCGCCCACACCACGTCCAAGGCCG
CTTCCCTCGGTGACACAGCATCAACCACAGCATCATCATCGCACATACTC
GTCGCAACATCCCCCGGGCACAACGCCAACACCCGCAGCCGAAGTCTATT
CCTGCCAGCCTCTGCCGCAGTCTCCTGTGTCTGGGCGTGCATCAAGCGTG
TCGCTGTATTTAGTACCGATTTCGAAAAGCAATACGCCGGCCATGGCACA
GGCGCCAGGCCTCCCCCTTTTGGCCAGAGGCCTTGCTCCTGATTGCTTGC
CACTCGGTTGGCGTACTGACGTAGCGTTCCCTTGCTTTTCATCTCCCTTA
GGCGCTTGGCCACCAGACTGTGCAAATATGCCAACTCACCATCCCCGCTC
GAGATGTTAATGACACATCCAAACCCACGTTTTTGCATGCCTGGCAAACA
TGCGTCCATCAGTGCTACGGGTCCCCACGCATTAACGTCCAGCGTGCGCT
GATACACGCCTTCCCTCCCTCCGCTCCCATCTACTGCCGCTGCTTCGTCT
TCGTCACGCACGCAGATCCCTGCGTTATTGATCCATAAATGCGGCATGCC
TTCCCGCAGCTCCTTGTCCTGCTTCAAGTGTGCCATCAAAGTCTGGATGC
TTTCTGGCTGGCTCACGTCCAAAGGCACAAATTCACATCGATCTTGCCCA
TGCCGCTTCTGAATGTCCATGACGTGCGCCTGGCCTTCCTCCACGTTGCG
CGCCGTTAGAATGACACGGTAGCCCATTTCAGCCAATAATTCGGCCGTGG
CCAGGCCCAGTCCTCGATTGCCGCCCGTGACCACGGCGCTGATGCGGGGC
GTAAAGGCCTGGGTCAAGTGGGGGAGGAGGAGGACGAGGAGGAGGGGGAA
GAGGAGGAGAGGAAACGGTGTGGGCGGGGCGAGACAGTTCCTCCGGCGCC
GCTGCAGATGCATCAAGGCGCGGTCGTTGGCGAGGATGTTCTATTTCATA
TCTGCTCTGTGTTTAAGTTGGATTATATAGAATACGAGGACATTGCGCGA
GAAGCGGTGCAACACCTGAGCGCCTTGCCTCCCTGTTGCCCCCATGCACT
GTTTCCCACCCCACTCAATCTACCACGCATATACAAGACGGCCATTACTC
GTTATTCACAAACTACTAAAAAGATTGTCAGCCTGCTATGTGGGGGTGCC
CCATGGCGCCGTCTACAGTGCTGGCATGCTGTTATCAAAGCAAGGATCGC
TGTTGCGGATGCAAAACACGGCACGACCGTCTCCATTTTTTCTTACAATT
GTTTGACCGAAACTCCACCCACACGACAGCACAGGCCACAGCATAGACCT
CGCTCTCAAGTCCCCAATTTTTCCCGCTTCGTCATGATGGCGACCTTGCG
CCGCTCAGGTGGAGCTGCGATCGAAGCCTCCATCGTTCTCCTCGTCCTCC
TGTGCCTTTCTTCAACCAGGGCCTTCGTGCCTGGGCTACCCCGCCAGTCT
ATCAGTGCCTGGCCATCGCCATCATTCAAGATGCAGCCGTCACTACAGCA
GCAACAGgtacgtgaaccatgtgtcatggaagcggagagagtgcgtggtg
cagtaggaggattaaagggacatcacaatgacgtggcccgagttctgaca
tcctcaaccatagactcatccactgacccccgcccccctcctacctattc
gacaacagCTCTCTCGCAGTACAATAGGCTCCACGCAACTCAGCGCGGTG
GACGACGCCGATGAAGTCACAAAAAAATTCGGACTGGAAGCGGGCCTCTT
CTCCATATTCAAGTCAGGCGCAAACAAAGAAGGCAAGGCCGTGCAAGCCA
AGGATCTATTGGCCAAATACGGATCCGCCTACCTCGCCACCTCCATCTCC
CTCTCAATTGTCTCCTTCTCCTTGTGTTATGCCTTGGTCACAGCCGGAGT
AGACGTGCCGTCCTTGCTAGCCAAGGTGGGCATCACGGCGAGCTCCCAAA
CCGAGACTGCGGGGACGGTTGCTCTTGCCTACGCAGCACACAAGGCAGCT
TCTCCCATTCGTTTTCCGCCCACAGTGGCGTTGACGCCGTTTGTAGCCAA
TGCGTTCGGCAAGAAGCCGGCGGCGGAAGACGCGGAGGAGTAGGTTGAGA
TATGATGAAAAAAGGATTGAGACCTGGGAGTCGGTTTGACACGGGAGGAC
ACAGAATAGAAAGATGGTGTCCTTTGGAAGGAAAAGACGGGTAGCGAGAC
AGGCTCCTTATTTGCAGTTAACATATATATAAATACTTATGGAAGTTAAT
GAGTGAAAAGAGGCAAGTATGTTTAATGAGGTCTTCGCACGAAAATGTCT
ATTTTTGTTTGTCATTTCACCTTTCGTAGGAGTGGGTCCAATCAGTTAGG
ATAATGAGTAGGGATTGAGAAGGTGGGGATGAATAGCGACGTAAGTAAGC
TCCAACACGAACACCAACACCAAAAAGAAGAAGATAAAAAGAAGCAAATA
TGTGTGTACGT
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protein sequence of NO02G01600.1

>NO02G01600.1-protein ID=NO02G01600.1-protein|Name=NO02G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MHQGAVVGEDVLFHICSVFKLDYIEYEDIAREAVQHLSALPPCCPHALFP
TPLNLPRIYKTAITRYSQTTKKIVSLLCGGAPWRRLQCWHAVIKARIAVA
DAKHGTTVSIFSYNCLTETPPTRQHRPQHRPRSQVPNFSRFVMMATLRRS
GGAAIEASIVLLVLLCLSSTRAFVPGLPRQSISAWPSPSFKMQPSLQQQQ
LSRSTIGSTQLSAVDDADEVTKKFGLEAGLFSIFKSGANKEGKAVQAKDL
LAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTET
AGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPAAEDAEE*
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Synonyms
Publications