NO02G01600.1, NO02G01600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01600.1
Unique NameNO02G01600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2560
Alignment locationchr2:471160..473870 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:471160..473870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01600.1 vs.
Match: EWM30460.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 228.4 bits (581), Expect = 3.400e-56
Identity = 131/185 (70.81%), Postives = 147/185 (79.46%), Query Frame = 0 
Query:  154 AIEASIVLLVLLCLSSTRAFVPGLPRQSISAWPSPSFKMQPSLQQQQLSRSTIGSTQLSAVDDADEVTKKFGLEAGLFSIFKSGANKEGKAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPA 339
            A E  ++L ++  L ST AFVP   R++    PS          QQQ+   ++  ++L A+DDADEVTKK+GLEAGLFSIFKSG NKEGK VQAKDLLAKYGSAYL TSISLS VSF LCY LVTAGVDVP+LLA+VGITAS+QTETAGTVALAYAAHKAASPIRFPPTVALTPFVANA GKKPA
Sbjct:   91 ASELVLILALVSSLPSTMAFVPTATRRNPLVRPSLVSSSYTVSHQQQVPFLSVRDSKLFALDDADEVTKKYGLEAGLFSIFKSGGNKEGKTVQAKDLLAKYGSAYLITSISLSAVSFGLCYVLVTAGVDVPALLARVGITASTQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAIGKKPA 275
The following BLAST results are available for this feature:
BLAST of NO02G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30460.13.400e-5670.81transmembrane protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01600NO02G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01600.1NO02G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01600.1.cds1NO02G01600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01600.1.cds2NO02G01600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01600.1 ID=NO02G01600.1|Name=NO02G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2560bp
TTTCTTCCAAGCACGCTTTTAATCACTTACTTTTCTTTCTCGCTTCGTAC
TTAAGACCAATTCACACGTCTTTATGCCGTCTGTCGTTACTCCTCCCCAC
CCTTCTACATTTGGCTATAGAACTCAGTGCATTCAATCCCATTAACAAAC
ACATCCTCCTTTCACCAGGGTATCATTCGTCGATGCCGATAAAAAAATCC
TCCTGGACATTCGTCCGGGTGCAGCGCCGCCCACACCACGTCCAAGGCCG
CTTCCCTCGGTGACACAGCATCAACCACAGCATCATCATCGCACATACTC
GTCGCAACATCCCCCGGGCACAACGCCAACACCCGCAGCCGAAGTCTATT
CCTGCCAGCCTCTGCCGCAGTCTCCTGTGTCTGGGCGTGCATCAAGCGTG
TCGCTGTATTTAGTACCGATTTCGAAAAGCAATACGCCGGCCATGGCACA
GGCGCCAGGCCTCCCCCTTTTGGCCAGAGGCCTTGCTCCTGATTGCTTGC
CACTCGGTTGGCGTACTGACGTAGCGTTCCCTTGCTTTTCATCTCCCTTA
GGCGCTTGGCCACCAGACTGTGCAAATATGCCAACTCACCATCCCCGCTC
GAGATGTTAATGACACATCCAAACCCACGTTTTTGCATGCCTGGCAAACA
TGCGTCCATCAGTGCTACGGGTCCCCACGCATTAACGTCCAGCGTGCGCT
GATACACGCCTTCCCTCCCTCCGCTCCCATCTACTGCCGCTGCTTCGTCT
TCGTCACGCACGCAGATCCCTGCGTTATTGATCCATAAATGCGGCATGCC
TTCCCGCAGCTCCTTGTCCTGCTTCAAGTGTGCCATCAAAGTCTGGATGC
TTTCTGGCTGGCTCACGTCCAAAGGCACAAATTCACATCGATCTTGCCCA
TGCCGCTTCTGAATGTCCATGACGTGCGCCTGGCCTTCCTCCACGTTGCG
CGCCGTTAGAATGACACGGTAGCCCATTTCAGCCAATAATTCGGCCGTGG
CCAGGCCCAGTCCTCGATTGCCGCCCGTGACCACGGCGCTGATGCGGGGC
GTAAAGGCCTGGGTCAAGTGGGGGAGGAGGAGGACGAGGAGGAGGGGGAA
GAGGAGGAGAGGAAACGGTGTGGGCGGGGCGAGACAGTTCCTCCGGCGCC
GCTGCAGATGCATCAAGGCGCGGTCGTTGGCGAGGATGTTCTATTTCATA
TCTGCTCTGTGTTTAAGTTGGATTATATAGAATACGAGGACATTGCGCGA
GAAGCGGTGCAACACCTGAGCGCCTTGCCTCCCTGTTGCCCCCATGCACT
GTTTCCCACCCCACTCAATCTACCACGCATATACAAGACGGCCATTACTC
GTTATTCACAAACTACTAAAAAGATTGTCAGCCTGCTATGTGGGGGTGCC
CCATGGCGCCGTCTACAGTGCTGGCATGCTGTTATCAAAGCAAGGATCGC
TGTTGCGGATGCAAAACACGGCACGACCGTCTCCATTTTTTCTTACAATT
GTTTGACCGAAACTCCACCCACACGACAGCACAGGCCACAGCATAGACCT
CGCTCTCAAGTCCCCAATTTTTCCCGCTTCGTCATGATGGCGACCTTGCG
CCGCTCAGGTGGAGCTGCGATCGAAGCCTCCATCGTTCTCCTCGTCCTCC
TGTGCCTTTCTTCAACCAGGGCCTTCGTGCCTGGGCTACCCCGCCAGTCT
ATCAGTGCCTGGCCATCGCCATCATTCAAGATGCAGCCGTCACTACAGCA
GCAACAGCTCTCTCGCAGTACAATAGGCTCCACGCAACTCAGCGCGGTGG
ACGACGCCGATGAAGTCACAAAAAAATTCGGACTGGAAGCGGGCCTCTTC
TCCATATTCAAGTCAGGCGCAAACAAAGAAGGCAAGGCCGTGCAAGCCAA
GGATCTATTGGCCAAATACGGATCCGCCTACCTCGCCACCTCCATCTCCC
TCTCAATTGTCTCCTTCTCCTTGTGTTATGCCTTGGTCACAGCCGGAGTA
GACGTGCCGTCCTTGCTAGCCAAGGTGGGCATCACGGCGAGCTCCCAAAC
CGAGACTGCGGGGACGGTTGCTCTTGCCTACGCAGCACACAAGGCAGCTT
CTCCCATTCGTTTTCCGCCCACAGTGGCGTTGACGCCGTTTGTAGCCAAT
GCGTTCGGCAAGAAGCCGGCGGCGGAAGACGCGGAGGAGTAGGTTGAGAT
ATGATGAAAAAAGGATTGAGACCTGGGAGTCGGTTTGACACGGGAGGACA
CAGAATAGAAAGATGGTGTCCTTTGGAAGGAAAAGACGGGTAGCGAGACA
GGCTCCTTATTTGCAGTTAACATATATATAAATACTTATGGAAGTTAATG
AGTGAAAAGAGGCAAGTATGTTTAATGAGGTCTTCGCACGAAAATGTCTA
TTTTTGTTTGTCATTTCACCTTTCGTAGGAGTGGGTCCAATCAGTTAGGA
TAATGAGTAGGGATTGAGAAGGTGGGGATGAATAGCGACGTAAGTAAGCT
CCAACACGAACACCAACACCAAAAAGAAGAAGATAAAAAGAAGCAAATAT
GTGTGTACGT
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protein sequence of NO02G01600.1

>NO02G01600.1-protein ID=NO02G01600.1-protein|Name=NO02G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MHQGAVVGEDVLFHICSVFKLDYIEYEDIAREAVQHLSALPPCCPHALFP
TPLNLPRIYKTAITRYSQTTKKIVSLLCGGAPWRRLQCWHAVIKARIAVA
DAKHGTTVSIFSYNCLTETPPTRQHRPQHRPRSQVPNFSRFVMMATLRRS
GGAAIEASIVLLVLLCLSSTRAFVPGLPRQSISAWPSPSFKMQPSLQQQQ
LSRSTIGSTQLSAVDDADEVTKKFGLEAGLFSIFKSGANKEGKAVQAKDL
LAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGITASSQTET
AGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPAAEDAEE*
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mRNA from alignment at chr2:471160..473870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01600.1 ID=NO02G01600.1|Name=NO02G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2711bp|location=Sequence derived from alignment at chr2:471160..473870+ (Nannochloropsis oceanica)
TTTCTTCCAAGCACGCTTTTAATCACTTACTTTTCTTTCTCGCTTCGTAC
TTAAGACCAATTCACACGTCTTTATGCCGTCTGTCGTTACTCCTCCCCAC
CCTTCTACATTTGGCTATAGAACTCAGTGCATTCAATCCCATTAACAAAC
ACATCCTCCTTTCACCAGGGTATCATTCGTCGATGCCGATAAAAAAATCC
TCCTGGACATTCGTCCGGGTGCAGCGCCGCCCACACCACGTCCAAGGCCG
CTTCCCTCGGTGACACAGCATCAACCACAGCATCATCATCGCACATACTC
GTCGCAACATCCCCCGGGCACAACGCCAACACCCGCAGCCGAAGTCTATT
CCTGCCAGCCTCTGCCGCAGTCTCCTGTGTCTGGGCGTGCATCAAGCGTG
TCGCTGTATTTAGTACCGATTTCGAAAAGCAATACGCCGGCCATGGCACA
GGCGCCAGGCCTCCCCCTTTTGGCCAGAGGCCTTGCTCCTGATTGCTTGC
CACTCGGTTGGCGTACTGACGTAGCGTTCCCTTGCTTTTCATCTCCCTTA
GGCGCTTGGCCACCAGACTGTGCAAATATGCCAACTCACCATCCCCGCTC
GAGATGTTAATGACACATCCAAACCCACGTTTTTGCATGCCTGGCAAACA
TGCGTCCATCAGTGCTACGGGTCCCCACGCATTAACGTCCAGCGTGCGCT
GATACACGCCTTCCCTCCCTCCGCTCCCATCTACTGCCGCTGCTTCGTCT
TCGTCACGCACGCAGATCCCTGCGTTATTGATCCATAAATGCGGCATGCC
TTCCCGCAGCTCCTTGTCCTGCTTCAAGTGTGCCATCAAAGTCTGGATGC
TTTCTGGCTGGCTCACGTCCAAAGGCACAAATTCACATCGATCTTGCCCA
TGCCGCTTCTGAATGTCCATGACGTGCGCCTGGCCTTCCTCCACGTTGCG
CGCCGTTAGAATGACACGGTAGCCCATTTCAGCCAATAATTCGGCCGTGG
CCAGGCCCAGTCCTCGATTGCCGCCCGTGACCACGGCGCTGATGCGGGGC
GTAAAGGCCTGGGTCAAGTGGGGGAGGAGGAGGACGAGGAGGAGGGGGAA
GAGGAGGAGAGGAAACGGTGTGGGCGGGGCGAGACAGTTCCTCCGGCGCC
GCTGCAGATGCATCAAGGCGCGGTCGTTGGCGAGGATGTTCTATTTCATA
TCTGCTCTGTGTTTAAGTTGGATTATATAGAATACGAGGACATTGCGCGA
GAAGCGGTGCAACACCTGAGCGCCTTGCCTCCCTGTTGCCCCCATGCACT
GTTTCCCACCCCACTCAATCTACCACGCATATACAAGACGGCCATTACTC
GTTATTCACAAACTACTAAAAAGATTGTCAGCCTGCTATGTGGGGGTGCC
CCATGGCGCCGTCTACAGTGCTGGCATGCTGTTATCAAAGCAAGGATCGC
TGTTGCGGATGCAAAACACGGCACGACCGTCTCCATTTTTTCTTACAATT
GTTTGACCGAAACTCCACCCACACGACAGCACAGGCCACAGCATAGACCT
CGCTCTCAAGTCCCCAATTTTTCCCGCTTCGTCATGATGGCGACCTTGCG
CCGCTCAGGTGGAGCTGCGATCGAAGCCTCCATCGTTCTCCTCGTCCTCC
TGTGCCTTTCTTCAACCAGGGCCTTCGTGCCTGGGCTACCCCGCCAGTCT
ATCAGTGCCTGGCCATCGCCATCATTCAAGATGCAGCCGTCACTACAGCA
GCAACAGGTACGTGAACCATGTGTCATGGAAGCGGAGAGAGTGCGTGGTG
CAGTAGGAGGATTAAAGGGACATCACAATGACGTGGCCCGAGTTCTGACA
TCCTCAACCATAGACTCATCCACTGACCCCCGCCCCCCTCCTACCTATTC
GACAACAGCTCTCTCGCAGTACAATAGGCTCCACGCAACTCAGCGCGGTG
GACGACGCCGATGAAGTCACAAAAAAATTCGGACTGGAAGCGGGCCTCTT
CTCCATATTCAAGTCAGGCGCAAACAAAGAAGGCAAGGCCGTGCAAGCCA
AGGATCTATTGGCCAAATACGGATCCGCCTACCTCGCCACCTCCATCTCC
CTCTCAATTGTCTCCTTCTCCTTGTGTTATGCCTTGGTCACAGCCGGAGT
AGACGTGCCGTCCTTGCTAGCCAAGGTGGGCATCACGGCGAGCTCCCAAA
CCGAGACTGCGGGGACGGTTGCTCTTGCCTACGCAGCACACAAGGCAGCT
TCTCCCATTCGTTTTCCGCCCACAGTGGCGTTGACGCCGTTTGTAGCCAA
TGCGTTCGGCAAGAAGCCGGCGGCGGAAGACGCGGAGGAGTAGGTTGAGA
TATGATGAAAAAAGGATTGAGACCTGGGAGTCGGTTTGACACGGGAGGAC
ACAGAATAGAAAGATGGTGTCCTTTGGAAGGAAAAGACGGGTAGCGAGAC
AGGCTCCTTATTTGCAGTTAACATATATATAAATACTTATGGAAGTTAAT
GAGTGAAAAGAGGCAAGTATGTTTAATGAGGTCTTCGCACGAAAATGTCT
ATTTTTGTTTGTCATTTCACCTTTCGTAGGAGTGGGTCCAATCAGTTAGG
ATAATGAGTAGGGATTGAGAAGGTGGGGATGAATAGCGACGTAAGTAAGC
TCCAACACGAACACCAACACCAAAAAGAAGAAGATAAAAAGAAGCAAATA
TGTGTGTACGT
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Coding sequence (CDS) from alignment at chr2:471160..473870+

>NO02G01600.1 ID=NO02G01600.1|Name=NO02G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr2:471160..473870+ (Nannochloropsis oceanica)
ATGCATCAAGGCGCGGTCGTTGGCGAGGATGTTCTATTTCATATCTGCTC
TGTGTTTAAGTTGGATTATATAGAATACGAGGACATTGCGCGAGAAGCGG
TGCAACACCTGAGCGCCTTGCCTCCCTGTTGCCCCCATGCACTGTTTCCC
ACCCCACTCAATCTACCACGCATATACAAGACGGCCATTACTCGTTATTC
ACAAACTACTAAAAAGATTGTCAGCCTGCTATGTGGGGGTGCCCCATGGC
GCCGTCTACAGTGCTGGCATGCTGTTATCAAAGCAAGGATCGCTGTTGCG
GATGCAAAACACGGCACGACCGTCTCCATTTTTTCTTACAATTGTTTGAC
CGAAACTCCACCCACACGACAGCACAGGCCACAGCATAGACCTCGCTCTC
AAGTCCCCAATTTTTCCCGCTTCGTCATGATGGCGACCTTGCGCCGCTCA
GGTGGAGCTGCGATCGAAGCCTCCATCGTTCTCCTCGTCCTCCTGTGCCT
TTCTTCAACCAGGGCCTTCGTGCCTGGGCTACCCCGCCAGTCTATCAGTG
CCTGGCCATCGCCATCATTCAAGATGCAGCCGTCACTACAGCAGCAACAG
CTCTCTCGCAGTACAATAGGCTCCACGCAACTCAGCGCGGTGGACGACGC
CGATGAAGTCACAAAAAAATTCGGACTGGAAGCGGGCCTCTTCTCCATAT
TCAAGTCAGGCGCAAACAAAGAAGGCAAGGCCGTGCAAGCCAAGGATCTA
TTGGCCAAATACGGATCCGCCTACCTCGCCACCTCCATCTCCCTCTCAAT
TGTCTCCTTCTCCTTGTGTTATGCCTTGGTCACAGCCGGAGTAGACGTGC
CGTCCTTGCTAGCCAAGGTGGGCATCACGGCGAGCTCCCAAACCGAGACT
GCGGGGACGGTTGCTCTTGCCTACGCAGCACACAAGGCAGCTTCTCCCAT
TCGTTTTCCGCCCACAGTGGCGTTGACGCCGTTTGTAGCCAATGCGTTCG
GCAAGAAGCCGGCGGCGGAAGACGCGGAGGAGTAG
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Synonyms
Publications