NO02G01570, NO02G01570 (gene) Nannochloropsis oceanica

Overview
NameNO02G01570
Unique NameNO02G01570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length885
Alignment locationchr2:463950..464834 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:463950..464834 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_010413905.1 (PREDICTED: uncharacterized protein LOC104700135 [Camelina sativa])

HSP 1 Score: 89.0 bits (219), Expect = 1.600e-14
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:   67 PLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLEGDDA 161
            PL LTEEN  +VL +AR EL+ +F     + +VGITG+V+LV ++G  + + LR +FWH + MVLAR+  YM  RIPE + VEIEDE+QL+   A
Sbjct:   75 PLDLTEENIHLVLSEARIELAQLF-----DSSVGITGQVELVELDGPFVKISLRGKFWHTRAMVLARIGNYMKQRIPEILEVEIEDEKQLDDSPA 164
[Close]
BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_006295125.1 (uncharacterized protein LOC17888582 [Capsella rubella] >EOA28023.1 hypothetical protein CARUB_v10024199mg [Capsella rubella])

HSP 1 Score: 88.6 bits (218), Expect = 2.100e-14
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:   67 PLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLEGDDA 161
            PL LTE+N  +VL +AR EL+ +F     + +VGITG+V+LV ++G  + + LR +FWH + MVLAR+  YM  RIPE + VEIEDE+QL+   A
Sbjct:   75 PLDLTEDNIHLVLSEARIELAQLF-----DSSVGITGQVELVELDGPFVTISLRGKFWHTRAMVLARIGNYMKQRIPEILEVEIEDEKQLDDSPA 164
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BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_018813090.1 (PREDICTED: uncharacterized protein LOC108985298 isoform X1 [Juglans regia] >XP_018813091.1 PREDICTED: uncharacterized protein LOC108985298 isoform X1 [Juglans regia] >XP_018813092.1 PREDICTED: uncharacterized protein LOC108985298 isoform X1 [Juglans regia] >XP_018813093.1 PREDICTED: uncharacterized protein LOC108985298 isoform X1 [Juglans regia])

HSP 1 Score: 88.2 bits (217), Expect = 2.700e-14
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 0 
Query:   35 MTQLSSLPAAATVVPGRLPLSLLYMSQTMNEEPLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLE 157
            +  ++S P + T+   RLP S   +S   +  PL LTE+N   VL +AR EL  +F     + +VG+TGEV+L  ++G  + +RL+ RFWH +  VLARV  Y+  RIPE + V+IEDE+QL+
Sbjct:   48 LIMVASPPTSMTITRTRLPASAAALS---SPPPLDLTEDNIIRVLVEARAELGQIF-----DTSVGMTGEVELAELDGPFVKIRLKGRFWHKRSTVLARVGNYLKQRIPEILEVDIEDEKQLD 162
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BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_010509920.1 (PREDICTED: uncharacterized protein LOC104786259 [Camelina sativa])

HSP 1 Score: 87.8 bits (216), Expect = 3.500e-14
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:   67 PLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLEGDDA 161
            PL LTE+N  +VL +AR EL+ +F     + +VGITG+V+LV ++G  + + LR +FWH + MVLAR+  YM  RIPE + VEIEDE+QL+   A
Sbjct:   75 PLDLTEDNIHLVLSEARIELAQLF-----DSSVGITGQVELVELDGPFVKISLRGKFWHTRAMVLARIGNYMKQRIPEILEVEIEDEKQLDDSPA 164
[Close]
BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_010469511.1 (PREDICTED: uncharacterized protein LOC104749555 [Camelina sativa])

HSP 1 Score: 87.8 bits (216), Expect = 3.500e-14
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:   67 PLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLEGDDA 161
            PL LTE+N  +VL +AR EL+ +F     + +VGITG+V+LV ++G  + + LR +FWH + MVLAR+  YM  RIPE + VEIEDE+QL+   A
Sbjct:   75 PLDLTEDNIHLVLSEARIELAQLF-----DSSVGITGQVELVELDGPFVKISLRGKFWHTRAMVLARIGNYMKQRIPEILEVEIEDEKQLDDSPA 164
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BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_002183763.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44945.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 87.4 bits (215), Expect = 4.600e-14
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 0 
Query:   67 PLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQL 156
            P  LTEE    VL   R EL T+FGY  EN+ VGITG VD V ++G S+I+ L+ RFWH +  VL RV  Y+  RIPE + V++ED  QL
Sbjct:  106 PAELTEETVLGVLSACRGELGTLFGYSAENRGVGITGGVDYVDLDGPSVILSLKGRFWHQRTAVLERVGNYLQQRIPEIVDVQVEDPWQL 195
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BLAST of NO02G01570 vs. NCBI_GenBank
Match: KFK31077.1 (hypothetical protein AALP_AA6G065200 [Arabis alpina])

HSP 1 Score: 87.0 bits (214), Expect = 6.000e-14
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:   67 PLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLEGDDA 161
            PL LTE+N  +VL +AR EL+ +F     + +VGITG+V+LV ++G  + + LR +FWH + MVLAR+  Y+  RIPE + VEIEDE+QL+   A
Sbjct:   75 PLDLTEDNIHLVLSEARVELAQLF-----DLSVGITGQVELVELDGPFVTISLRGKFWHTRSMVLARIGNYLKQRIPEILEVEIEDEKQLDDSPA 164
[Close]
BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_020885627.1 (uncharacterized protein LOC9317334 [Arabidopsis lyrata subsp. lyrata] >XP_020886883.1 uncharacterized protein LOC9298471 [Arabidopsis lyrata subsp. lyrata] >EFH38652.1 hypothetical protein ARALYDRAFT_497470 [Arabidopsis lyrata subsp. lyrata] >EFH55691.1 hypothetical protein ARALYDRAFT_482253 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 86.7 bits (213), Expect = 7.800e-14
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:   67 PLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLEGDDA 161
            PL LTE+N  +VL +AR EL+ +F     + +VGITG+V+LV ++G  + + LR +FWH + MVLAR+  Y+  RIPE + VEIEDE+QL+   A
Sbjct:   75 PLDLTEDNIHLVLSEARIELAQLF-----DSSVGITGQVELVELDGPFVKISLRGKFWHTRAMVLARIGNYLKQRIPEILEVEIEDEKQLDDSPA 164
[Close]
BLAST of NO02G01570 vs. NCBI_GenBank
Match: CDY37748.1 (BnaA04g19200D [Brassica napus])

HSP 1 Score: 86.7 bits (213), Expect = 7.800e-14
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:   67 PLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLEGDDA 161
            PL LTE+N  +VL +AR EL+ +F     + +VGITG+V+LV ++G  + + LR +FWH + MVLAR+  Y+  RIPE + VEIEDE+QL+   A
Sbjct:   75 PLDLTEDNIRLVLSEARVELAQLF-----DLSVGITGQVELVELDGPFVKISLRGKFWHTRAMVLARIGNYLKQRIPEILEVEIEDEKQLDDSPA 164
[Close]
BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_009141292.1 (PREDICTED: uncharacterized protein LOC103865249 [Brassica rapa] >XP_013747247.1 uncharacterized protein LOC106450141 [Brassica napus])

HSP 1 Score: 86.7 bits (213), Expect = 7.800e-14
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:   67 PLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLEGDDA 161
            PL LTE+N  +VL +AR EL+ +F     + +VGITG+V+LV ++G  + + LR +FWH + MVLAR+  Y+  RIPE + VEIEDE+QL+   A
Sbjct:   75 PLDLTEDNIRLVLSEARVELAQLF-----DLSVGITGQVELVELDGPFVKISLRGKFWHTRAMVLARIGNYLKQRIPEILEVEIEDEKQLDDSPA 164
The following BLAST results are available for this feature:
BLAST of NO02G01570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_010413905.11.600e-1450.53PREDICTED: uncharacterized protein LOC104700135 [C... [more]
XP_006295125.12.100e-1449.47uncharacterized protein LOC17888582 [Capsella rube... [more]
XP_018813090.12.700e-1442.28PREDICTED: uncharacterized protein LOC108985298 is... [more]
XP_010509920.13.500e-1449.47PREDICTED: uncharacterized protein LOC104786259 [C... [more]
XP_010469511.13.500e-1449.47PREDICTED: uncharacterized protein LOC104749555 [C... [more]
XP_002183763.14.600e-1451.11predicted protein [Phaeodactylum tricornutum CCAP ... [more]
KFK31077.16.000e-1448.42hypothetical protein AALP_AA6G065200 [Arabis alpin... [more]
XP_020885627.17.800e-1448.42uncharacterized protein LOC9317334 [Arabidopsis ly... [more]
CDY37748.17.800e-1448.42BnaA04g19200D [Brassica napus][more]
XP_009141292.17.800e-1448.42PREDICTED: uncharacterized protein LOC103865249 [B... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006778NSK006778Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01570.1NO02G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573956gene_737Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g48gene163Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01570.1NO02G01570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01570 ID=NO02G01570|Name=NO02G01570|organism=Nannochloropsis oceanica|type=gene|length=885bp
GTTGTGTTTATGTGCTATGTTAGTCGTGAATTGTGTGTCTTCATCGGTTG
GGGGAGCAAGGGTGGGGGAGGTCACCCACAGACCCACCGCGCCTCGAGGA
TGCAGTCAAGGCATCCTTTCCTCTAGATCCTCTACTGCAGCAGTTGCTGT
GTACTGTCTCTCAGGATATACTATCTGCATAAACATAAAACACGCAACAC
GCAACACAGGCTTTCAAGCCCCACTCTCCAAGCCAGCATCAACATGCCGT
CGTCCTCAACGTCCTCGTCGATCTGCCTCCTGCTAGGCTTGCTACTGGTC
TCCGTCCAAGGTTTCTTCTTCACCCCGACACGTTTATCCTTGGGTATGAC
ACAATTGTCCTCCCTCCCTGCAGCTGCCACCGTCGTCCCCGGGCGGCTGC
CCCTCTCCTTGCTGTACATGAGCCAGACAATGAACGAGGAGCCCTTGATC
TTGACAGAGGAAAATGCAGCCATGGTGCTGCAGCAAGCTCGGGAGGAGCT
TAGCACGATGTTTGGGTATTTGGATGAGAATAAGGCGGTTGGGATCACGG
GGGAAGTGGATTTGGTGGCCGTGGAAGGTATAAGCATCATTGTTCGCCTG
AGGAATCGATTTTGGCATGATAAAAGGATGGTGTTGGCGCGTGTGAGTAA
GTACATGACGGACCGCATTCCTGAGGCGATGGTGGAGATCGAGGACGAGA
GGCAATTGGAGGGGGATGATGCCAAGAGTGTCTCAGATTTTTATAAGCAC
TAATTGAATGGGGAGGGGAGGGAGGCAAGGAATGGAGGAGGGGAGGGGAG
AAAAATGAAAAGCACACCACGTAGTAGAGGGAAAGGTAAGTTTGTGGTAA
TTCACTTTCTATTTGGTGAATAACATCTTCGCCAT
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protein sequence of NO02G01570.1

>NO02G01570.1-protein ID=NO02G01570.1-protein|Name=NO02G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MPSSSTSSSICLLLGLLLVSVQGFFFTPTRLSLGMTQLSSLPAAATVVPG
RLPLSLLYMSQTMNEEPLILTEENAAMVLQQAREELSTMFGYLDENKAVG
ITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAMVEIE
DERQLEGDDAKSVSDFYKH*
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Synonyms
Publications