NO02G01570.1, NO02G01570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01570.1
Unique NameNO02G01570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length885
Alignment locationchr2:463950..464834 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:463950..464834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01570.1 vs.
Match: EWM30545.1 (hypothetical protein Naga_100013g48 [Nannochloropsis gaditana])

HSP 1 Score: 193.0 bits (489), Expect = 7.700e-46
Identity = 104/167 (62.28%), Postives = 132/167 (79.04%), Query Frame = 0
Query:    5 STSSSICLLLGLLLVSV-QGFFFTPTRLSLGMTQLSSLPAAATVVPGRLPLS-LLYMSQTMNEEPLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAMVEIEDERQLEGDDAKSVSDFYKH 170
            ST++S+ L+LG +L +V + F   P R S  +T   + P A ++V   + L+  ++MS +  +EPLILTEENAA+VL+ AR+EL TMFGY  EN+AVGITGEVDLVAVEGISIIVRL+NRFWHD++MVL R+SK++TDRIPEAMVEIED  QL+GDDAKSVSDFY H
Sbjct:   53 STTTSLFLVLGAMLCAVTKSFIPVPARASRSVTYFPAKPTAISLVGSTMRLTPYMFMSTSNFDEPLILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAMVEIEDVEQLKGDDAKSVSDFYAH 219          
The following BLAST results are available for this feature:
BLAST of NO02G01570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30545.17.700e-4662.28hypothetical protein Naga_100013g48 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01570NO02G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01570.1NO02G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01570.1.cds1NO02G01570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01570.1 ID=NO02G01570.1|Name=NO02G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
GTTGTGTTTATGTGCTATGTTAGTCGTGAATTGTGTGTCTTCATCGGTTG
GGGGAGCAAGGGTGGGGGAGGTCACCCACAGACCCACCGCGCCTCGAGGA
TGCAGTCAAGGCATCCTTTCCTCTAGATCCTCTACTGCAGCAGTTGCTGT
GTACTGTCTCTCAGGATATACTATCTGCATAAACATAAAACACGCAACAC
GCAACACAGGCTTTCAAGCCCCACTCTCCAAGCCAGCATCAACATGCCGT
CGTCCTCAACGTCCTCGTCGATCTGCCTCCTGCTAGGCTTGCTACTGGTC
TCCGTCCAAGGTTTCTTCTTCACCCCGACACGTTTATCCTTGGGTATGAC
ACAATTGTCCTCCCTCCCTGCAGCTGCCACCGTCGTCCCCGGGCGGCTGC
CCCTCTCCTTGCTGTACATGAGCCAGACAATGAACGAGGAGCCCTTGATC
TTGACAGAGGAAAATGCAGCCATGGTGCTGCAGCAAGCTCGGGAGGAGCT
TAGCACGATGTTTGGGTATTTGGATGAGAATAAGGCGGTTGGGATCACGG
GGGAAGTGGATTTGGTGGCCGTGGAAGGTATAAGCATCATTGTTCGCCTG
AGGAATCGATTTTGGCATGATAAAAGGATGGTGTTGGCGCGTGTGAGTAA
GTACATGACGGACCGCATTCCTGAGGCGATGGTGGAGATCGAGGACGAGA
GGCAATTGGAGGGGGATGATGCCAAGAGTGTCTCAGATTTTTATAAGCAC
TAATTGAATGGGGAGGGGAGGGAGGCAAGGAATGGAGGAGGGGAGGGGAG
AAAAATGAAAAGCACACCACGTAGTAGAGGGAAAGGTAAGTTTGTGGTAA
TTCACTTTCTATTTGGTGAATAACATCTTCGCCAT
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protein sequence of NO02G01570.1

>NO02G01570.1-protein ID=NO02G01570.1-protein|Name=NO02G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MPSSSTSSSICLLLGLLLVSVQGFFFTPTRLSLGMTQLSSLPAAATVVPG
RLPLSLLYMSQTMNEEPLILTEENAAMVLQQAREELSTMFGYLDENKAVG
ITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAMVEIE
DERQLEGDDAKSVSDFYKH*
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mRNA from alignment at chr2:463950..464834+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01570.1 ID=NO02G01570.1|Name=NO02G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=885bp|location=Sequence derived from alignment at chr2:463950..464834+ (Nannochloropsis oceanica)
GTTGTGTTTATGTGCTATGTTAGTCGTGAATTGTGTGTCTTCATCGGTTG GGGGAGCAAGGGTGGGGGAGGTCACCCACAGACCCACCGCGCCTCGAGGA TGCAGTCAAGGCATCCTTTCCTCTAGATCCTCTACTGCAGCAGTTGCTGT GTACTGTCTCTCAGGATATACTATCTGCATAAACATAAAACACGCAACAC GCAACACAGGCTTTCAAGCCCCACTCTCCAAGCCAGCATCAACATGCCGT CGTCCTCAACGTCCTCGTCGATCTGCCTCCTGCTAGGCTTGCTACTGGTC TCCGTCCAAGGTTTCTTCTTCACCCCGACACGTTTATCCTTGGGTATGAC ACAATTGTCCTCCCTCCCTGCAGCTGCCACCGTCGTCCCCGGGCGGCTGC CCCTCTCCTTGCTGTACATGAGCCAGACAATGAACGAGGAGCCCTTGATC TTGACAGAGGAAAATGCAGCCATGGTGCTGCAGCAAGCTCGGGAGGAGCT TAGCACGATGTTTGGGTATTTGGATGAGAATAAGGCGGTTGGGATCACGG GGGAAGTGGATTTGGTGGCCGTGGAAGGTATAAGCATCATTGTTCGCCTG AGGAATCGATTTTGGCATGATAAAAGGATGGTGTTGGCGCGTGTGAGTAA GTACATGACGGACCGCATTCCTGAGGCGATGGTGGAGATCGAGGACGAGA GGCAATTGGAGGGGGATGATGCCAAGAGTGTCTCAGATTTTTATAAGCAC TAATTGAATGGGGAGGGGAGGGAGGCAAGGAATGGAGGAGGGGAGGGGAG AAAAATGAAAAGCACACCACGTAGTAGAGGGAAAGGTAAGTTTGTGGTAA TTCACTTTCTATTTGGTGAATAACATCTTCGCCAT
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Coding sequence (CDS) from alignment at chr2:463950..464834+

>NO02G01570.1 ID=NO02G01570.1|Name=NO02G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr2:463950..464834+ (Nannochloropsis oceanica)
ATGCCGTCGTCCTCAACGTCCTCGTCGATCTGCCTCCTGCTAGGCTTGCT
ACTGGTCTCCGTCCAAGGTTTCTTCTTCACCCCGACACGTTTATCCTTGG
GTATGACACAATTGTCCTCCCTCCCTGCAGCTGCCACCGTCGTCCCCGGG
CGGCTGCCCCTCTCCTTGCTGTACATGAGCCAGACAATGAACGAGGAGCC
CTTGATCTTGACAGAGGAAAATGCAGCCATGGTGCTGCAGCAAGCTCGGG
AGGAGCTTAGCACGATGTTTGGGTATTTGGATGAGAATAAGGCGGTTGGG
ATCACGGGGGAAGTGGATTTGGTGGCCGTGGAAGGTATAAGCATCATTGT
TCGCCTGAGGAATCGATTTTGGCATGATAAAAGGATGGTGTTGGCGCGTG
TGAGTAAGTACATGACGGACCGCATTCCTGAGGCGATGGTGGAGATCGAG
GACGAGAGGCAATTGGAGGGGGATGATGCCAAGAGTGTCTCAGATTTTTA
TAAGCACTAA
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Synonyms
Publications