NO02G01570, NO02G01570 (gene) Nannochloropsis oceanica

Overview
NameNO02G01570
Unique NameNO02G01570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length885
Alignment locationchr2:463950..464834 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:463950..464834 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G01570 vs. NCBI_GenBank
Match: EWM30545.1 (hypothetical protein Naga_100013g48 [Nannochloropsis gaditana])

HSP 1 Score: 193.0 bits (489), Expect = 7.700e-46
Identity = 104/167 (62.28%), Postives = 132/167 (79.04%), Query Frame = 0
Query:    5 STSSSICLLLGLLLVSV-QGFFFTPTRLSLGMTQLSSLPAAATVVPGRLPLS-LLYMSQTMNEEPLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAMVEIEDERQLEGDDAKSVSDFYKH 170
            ST++S+ L+LG +L +V + F   P R S  +T   + P A ++V   + L+  ++MS +  +EPLILTEENAA+VL+ AR+EL TMFGY  EN+AVGITGEVDLVAVEGISIIVRL+NRFWHD++MVL R+SK++TDRIPEAMVEIED  QL+GDDAKSVSDFY H
Sbjct:   53 STTTSLFLVLGAMLCAVTKSFIPVPARASRSVTYFPAKPTAISLVGSTMRLTPYMFMSTSNFDEPLILTEENAALVLEAARQELGTMFGYTKENQAVGITGEVDLVAVEGISIIVRLKNRFWHDRKMVLTRISKFITDRIPEAMVEIEDVEQLKGDDAKSVSDFYAH 219          
BLAST of NO02G01570 vs. NCBI_GenBank
Match: CBJ26822.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 104.0 bits (258), Expect = 4.700e-19
Identity = 55/98 (56.12%), Postives = 69/98 (70.41%), Query Frame = 0
Query:   63 MNEEPLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLEGDD 160
            M +E LILTEEN   VL +A+ ELST+FG   EN AVGITG+ + V ++G S++VRL  RFWH+K  VLARV  ++  RIPE + VEIED  QLE  D
Sbjct:    1 MAQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTVLARVGNFVQTRIPECVDVEIEDPSQLEDAD 98          
BLAST of NO02G01570 vs. NCBI_GenBank
Match: CEM30550.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 95.5 bits (236), Expect = 1.700e-16
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 0
Query:   20 SVQGFFFTPTRLSLGMTQLSSLPAAATVVPGRLPLSLLYMS----QTMNEEPLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLE 157
            +   F  +P+ L   +        AA+V P R PL  L       +   E+ LILTEEN    L+  R+ELS +FG  +EN++VGITG+V+   ++G  +I+RL+ RFWH +  VL RV+ ++ +RIPE + VEIED   L+
Sbjct:   24 TASAFTLSPSLLPSPLHTXXXXXXAASVHPFRPPLLRLRPPLPPLRAAQEDQLILTEENVEKTLEACRQELSALFGNSEENRSVGITGDVEFAGLDGPLVILRLKGRFWHSRATVLERVTAFLLNRIPECLGVEIEDPAMLD 165          
BLAST of NO02G01570 vs. NCBI_GenBank
Match: OLP88774.1 (Catalase-peroxidase 1 [Symbiodinium microadriaticum])

HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15
Identity = 62/154 (40.26%), Postives = 83/154 (53.90%), Query Frame = 0
Query:   17 LLVSVQGFF-FTPTRLSLGMTQLSSLPAAATVVPGRLPLSLLYMSQTMNEEPLILTEENAAMVLQQAR-EELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPE-AMVEIEDERQLEGDDAKSVSDFY 168
            LLV +  F  F P+       Q S++P  A  VPG  P+ +          PL L+EEN  +VLQ+AR   +   FGY++E+   GITG+VDLV VEG  +I+ L   FWH +  VL RV KY+  RIPE A V++ED   L  +       FY
Sbjct:  312 LLVKLATFVAFVPSASFTSHRQRSTIPMRA--VPGAEPIGI----------PLTLSEENVEVVLQEARYHHMQNCFGYVEESTGAGITGKVDLVEVEGPMVIIHLYGAFWHKREDVLRRVKKYLIQRIPEIADVDVEDPDDLVDEGRDRSGTFY 453          
BLAST of NO02G01570 vs. NCBI_GenBank
Match: GAX18882.1 (hypothetical protein FisN_8Hu097 [Fistulifera solaris])

HSP 1 Score: 91.7 bits (226), Expect = 2.400e-15
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 0
Query:   68 LILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLEGD 159
            L L+EEN   VL   R+E+ T+FGY  EN+ VGITG VDLV ++G +II+RL+ RFWH+++ VL RV+ Y+  RIPE + V +ED  QL  +
Sbjct:  101 LELSEENVLGVLAACRQEVGTLFGYTAENRGVGITGGVDLVDLDGPTIILRLKGRFWHERKTVLERVANYLQQRIPEIIDVIVEDPWQLTNE 192          
BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_005758674.1 (hypothetical protein EMIHUDRAFT_249978 [Emiliania huxleyi CCMP1516] >EOD06245.1 hypothetical protein EMIHUDRAFT_249978 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 91.3 bits (225), Expect = 3.200e-15
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 0
Query:   68 LILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLE 157
            L+LTEEN   VL +A  +L TMFG   E+ AVGITG  DLV ++G ++++RL  RFWH +  VL R+  ++ +RIPE + VEIED  QLE
Sbjct:   54 LVLTEENVQAVLDEAERDLGTMFGSNPESAAVGITGRADLVELDGPTVVIRLSGRFWHARARVLERLEAFVLERIPECIGVEIEDPSQLE 143          
BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_005833481.1 (hypothetical protein GUITHDRAFT_152388 [Guillardia theta CCMP2712] >EKX46501.1 hypothetical protein GUITHDRAFT_152388 [Guillardia theta CCMP2712])

HSP 1 Score: 90.1 bits (222), Expect = 7.000e-15
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 0
Query:   63 MNEEPLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLE 157
            M++EPL LTE+N    L++++E L TMFG   EN+ +GITG+V LV ++G    VRL  RFWH +  VLARV  Y+  R+PE + V IED  QL+
Sbjct:   66 MDKEPLDLTEDNVQQALEESKEILGTMFGNSQENREIGITGDVQLVNLDGPFASVRLVGRFWHKRSDVLARVENYVKTRVPEIVEVSIEDPMQLD 160          
BLAST of NO02G01570 vs. NCBI_GenBank
Match: KOO32279.1 (hypothetical protein Ctob_010676 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 90.1 bits (222), Expect = 7.000e-15
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 0
Query:   67 PLILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLE 157
            P  LTEENA  VLQ+  E+L T+FG   E+ AVGITG  D V +EG  +++ L  RFWH + MV+ RV KY+ DRIPE + VEI D  QL+
Sbjct:    7 PRELTEENARAVLQECMEDLGTLFGSNAESLAVGITGAADFVDLEGPILVISLSGRFWHQRSMVVERVKKYVMDRIPECVDVEIVDVAQLD 97          
BLAST of NO02G01570 vs. NCBI_GenBank
Match: EJK62113.1 (hypothetical protein THAOC_17288 [Thalassiosira oceanica])

HSP 1 Score: 89.7 bits (221), Expect = 9.200e-15
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 0
Query:   68 LILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQL--EGDDA 161
            L L EE    VL   R+E+ TMFGY  EN+ VGITG VD V ++G ++IV L+ RFWH +  VL+RVS Y+  RIPE + V +EDE QL  E +DA
Sbjct:  117 LALDEETVQGVLAACRQEIGTMFGYQAENRGVGITGGVDFVDLDGPTVIVSLKGRFWHQRPTVLSRVSSYLIARIPEIVEVIVEDEYQLTDEANDA 212          
BLAST of NO02G01570 vs. NCBI_GenBank
Match: XP_005792548.1 (hypothetical protein EMIHUDRAFT_222964 [Emiliania huxleyi CCMP1516] >EOD40119.1 hypothetical protein EMIHUDRAFT_222964 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 89.7 bits (221), Expect = 9.200e-15
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 0
Query:   68 LILTEENAAMVLQQAREELSTMFGYLDENKAVGITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAM-VEIEDERQLE 157
            L+LTEEN   VL +A  +L TMFG   E+ AVGITG  +LV ++G ++++RL  RFWH +  VL R+  ++ +RIPE + VEIED  QLE
Sbjct:   54 LVLTEENVQAVLDEAERDLGTMFGSNPESAAVGITGRAELVELDGPTVVIRLSGRFWHARARVLERLEAFVLERIPECIGVEIEDPSQLE 143          
The following BLAST results are available for this feature:
BLAST of NO02G01570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30545.17.700e-4662.28hypothetical protein Naga_100013g48 [Nannochlorops... [more]
CBJ26822.14.700e-1956.12conserved unknown protein [Ectocarpus siliculosus][more]
CEM30550.11.700e-1639.44unnamed protein product [Vitrella brassicaformis C... [more]
OLP88774.11.400e-1540.26Catalase-peroxidase 1 [Symbiodinium microadriaticu... [more]
GAX18882.12.400e-1551.09hypothetical protein FisN_8Hu097 [Fistulifera sola... [more]
XP_005758674.13.200e-1551.11hypothetical protein EMIHUDRAFT_249978 [Emiliania ... [more]
XP_005833481.17.000e-1549.47hypothetical protein GUITHDRAFT_152388 [Guillardia... [more]
KOO32279.17.000e-1552.75hypothetical protein Ctob_010676 [Chrysochromulina... [more]
EJK62113.19.200e-1552.08hypothetical protein THAOC_17288 [Thalassiosira oc... [more]
XP_005792548.19.200e-1550.00hypothetical protein EMIHUDRAFT_222964 [Emiliania ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006778NSK006778Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01570.1NO02G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573956gene_737Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g48gene163Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01570.1NO02G01570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01570 ID=NO02G01570|Name=NO02G01570|organism=Nannochloropsis oceanica|type=gene|length=885bp
GTTGTGTTTATGTGCTATGTTAGTCGTGAATTGTGTGTCTTCATCGGTTG
GGGGAGCAAGGGTGGGGGAGGTCACCCACAGACCCACCGCGCCTCGAGGA
TGCAGTCAAGGCATCCTTTCCTCTAGATCCTCTACTGCAGCAGTTGCTGT
GTACTGTCTCTCAGGATATACTATCTGCATAAACATAAAACACGCAACAC
GCAACACAGGCTTTCAAGCCCCACTCTCCAAGCCAGCATCAACATGCCGT
CGTCCTCAACGTCCTCGTCGATCTGCCTCCTGCTAGGCTTGCTACTGGTC
TCCGTCCAAGGTTTCTTCTTCACCCCGACACGTTTATCCTTGGGTATGAC
ACAATTGTCCTCCCTCCCTGCAGCTGCCACCGTCGTCCCCGGGCGGCTGC
CCCTCTCCTTGCTGTACATGAGCCAGACAATGAACGAGGAGCCCTTGATC
TTGACAGAGGAAAATGCAGCCATGGTGCTGCAGCAAGCTCGGGAGGAGCT
TAGCACGATGTTTGGGTATTTGGATGAGAATAAGGCGGTTGGGATCACGG
GGGAAGTGGATTTGGTGGCCGTGGAAGGTATAAGCATCATTGTTCGCCTG
AGGAATCGATTTTGGCATGATAAAAGGATGGTGTTGGCGCGTGTGAGTAA
GTACATGACGGACCGCATTCCTGAGGCGATGGTGGAGATCGAGGACGAGA
GGCAATTGGAGGGGGATGATGCCAAGAGTGTCTCAGATTTTTATAAGCAC
TAATTGAATGGGGAGGGGAGGGAGGCAAGGAATGGAGGAGGGGAGGGGAG
AAAAATGAAAAGCACACCACGTAGTAGAGGGAAAGGTAAGTTTGTGGTAA
TTCACTTTCTATTTGGTGAATAACATCTTCGCCAT
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protein sequence of NO02G01570.1

>NO02G01570.1-protein ID=NO02G01570.1-protein|Name=NO02G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MPSSSTSSSICLLLGLLLVSVQGFFFTPTRLSLGMTQLSSLPAAATVVPG
RLPLSLLYMSQTMNEEPLILTEENAAMVLQQAREELSTMFGYLDENKAVG
ITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAMVEIE
DERQLEGDDAKSVSDFYKH*
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Synonyms
Publications