NO02G01480, NO02G01480 (gene) Nannochloropsis oceanica

Overview
NameNO02G01480
Unique NameNO02G01480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length884
Alignment locationchr2:440221..441104 +

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Properties
Property NameValue
DescriptionLyr family of fe s cluster biogenesis protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:440221..441104 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_005855485.1 (lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526] >XP_005855854.1 lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526] >EKU20503.1 lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526] >EKU20872.1 lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 136.7 bits (343), Expect = 5.300e-29
Identity = 69/89 (77.53%), Postives = 79/89 (88.76%), Query Frame = 0
Query:   45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSVTPSSS 134
            M+PQRASGLQKEVLSLYR++LRAAR KD  K DGGT+TLARTRFREDA SV RMDFQKIEFL+R G KQLKYL+MPS ++G SVTPS++
Sbjct:    1 MSPQRASGLQKEVLSLYRRVLRAARVKDAGKIDGGTYTLARTRFREDATSVSRMDFQKIEFLIRQGHKQLKYLNMPSVLRGASVTPSAA 89          
BLAST of NO02G01480 vs. NCBI_GenBank
Match: CCA23842.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 79.3 bits (194), Expect = 1.000e-11
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0
Query:   51 SGLQKEVLSLYRQLLRAARRKDPTKED--GGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSVTPSSSP 135
            SGLQK+VL LY+ LL AA++KD   ED  G T++  R RFRE+A SV R DF KIE+LLR G + LK +D       TSV  S+ P
Sbjct:    6 SGLQKQVLKLYKSLLSAAKQKDQGGEDRRGSTYSYVRERFRENAESVDRSDFAKIEYLLRKGERDLKMVDRIKSANITSVQHSNKP 91          
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_018480726.1 (PREDICTED: succinate dehydrogenase assembly factor 1A, mitochondrial [Raphanus sativus] >XP_018480727.1 PREDICTED: succinate dehydrogenase assembly factor 1A, mitochondrial [Raphanus sativus])

HSP 1 Score: 70.9 bits (172), Expect = 3.600e-9
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 0
Query:   45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSV 129
            M   + SG+QK+VLSLYR  LRAAR K  T++     T+  T FR+++  V R +FQ IE+LLR G KQL  L  P  V  +SV
Sbjct:    1 MGATKLSGMQKQVLSLYRGFLRAARSKQTTEDRRRIETIVSTEFRKNSKEVDRKNFQYIEYLLRLGHKQLDQLKSPDMVSISSV 84          
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_009141831.1 (PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Brassica rapa] >XP_009141832.1 PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Brassica rapa] >XP_013636209.1 PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Brassica oleracea var. oleracea])

HSP 1 Score: 70.5 bits (171), Expect = 4.700e-9
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 0
Query:   45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSV 129
            M   + SG+QK+VLSLYR  LRAAR K  T++     T+  T FR+++  V R +FQ IE+LLR G KQL  L  P  V  +SV
Sbjct:    1 MGATKLSGMQKQVLSLYRGFLRAARSKPTTEDRKRIETIVSTEFRKNSKEVDRKNFQYIEYLLRLGHKQLDQLKSPDMVSISSV 84          
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_013677145.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Brassica napus])

HSP 1 Score: 69.3 bits (168), Expect = 1.000e-8
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 0
Query:   45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSV 129
            M   + SG+QK+VLSLYR  LRAAR K PT++     T+  T FR+++  V R +FQ IE+LLR G KQL  L  P  V  +SV
Sbjct:    1 MGATKLSGMQKQVLSLYRGFLRAARSK-PTEDRKRIETIVSTEFRKNSKEVDRKNFQYIEYLLRLGHKQLDQLKSPDMVSISSV 83          
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_020519304.1 (succinate dehydrogenase assembly factor 1A, mitochondrial [Amborella trichopoda] >ERN00196.1 hypothetical protein AMTR_s00111p00093600 [Amborella trichopoda])

HSP 1 Score: 68.9 bits (167), Expect = 1.400e-8
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 0
Query:   34 GIGDKTDEELRMTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSVTP 131
            G+G +T + L       SGLQ+EVL LYR  LRAARRK P +E      + R+ FR+ A  V   DF ++E+LLR G+KQL+ L+ P  +  +S+ P
Sbjct:   17 GMGTRTRKVL-------SGLQREVLGLYRGFLRAARRKGP-EERSEIEAVVRSEFRKMAVLVDAKDFMRVEYLLRRGKKQLEQLNTPETLSISSLKP 105          
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_023639404.1 (succinate dehydrogenase assembly factor 1, mitochondrial isoform X1 [Capsella rubella])

HSP 1 Score: 67.8 bits (164), Expect = 3.000e-8
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 0
Query:   44 RMTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSV 129
            +M   + SG+QK+VLSLYR  LRAAR K PT++     ++  T FR ++  V R +FQ IE+LLR G KQL  L  P  V  +SV
Sbjct:   25 KMGAAKLSGMQKQVLSLYRGFLRAARSK-PTEDRKRIESIVSTEFRHNSKEVDRKNFQYIEYLLRLGTKQLDQLKSPDIVSLSSV 108          
BLAST of NO02G01480 vs. NCBI_GenBank
Match: EJK72606.1 (hypothetical protein THAOC_05844 [Thalassiosira oceanica])

HSP 1 Score: 67.4 bits (163), Expect = 3.900e-8
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 0
Query:   48 QRASGLQKEVLSLYRQLLRAAR---RKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMP 121
            +R SGLQK+VL+LYR +LR A    R+   K +  ++  AR +FR++A SV+R DF++IE+ +R G KQLK + MP
Sbjct:    3 RRLSGLQKDVLALYRSILRQASVIDRQRQCKGETSSFVHAREKFRKEAMSVRRSDFKRIEYKIRKGEKQLKLMKMP 78          
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_023639405.1 (succinate dehydrogenase assembly factor 1, mitochondrial isoform X2 [Capsella rubella] >EOA26322.1 hypothetical protein CARUB_v10025335mg [Capsella rubella])

HSP 1 Score: 67.0 bits (162), Expect = 5.100e-8
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 0
Query:   45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSV 129
            M   + SG+QK+VLSLYR  LRAAR K PT++     ++  T FR ++  V R +FQ IE+LLR G KQL  L  P  V  +SV
Sbjct:    1 MGAAKLSGMQKQVLSLYRGFLRAARSK-PTEDRKRIESIVSTEFRHNSKEVDRKNFQYIEYLLRLGTKQLDQLKSPDIVSLSSV 83          
BLAST of NO02G01480 vs. NCBI_GenBank
Match: CDP00907.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 67.0 bits (162), Expect = 5.100e-8
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 0
Query:   49 RASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSVTPSSSPSR 137
            R SG+QK+VL+LYR  LRAA  K P +E     +   + FR +A  + R +FQ IE+LLR G+KQL+ L  P  +  +S+T +SS +R
Sbjct:    8 RLSGMQKQVLALYRGFLRAAHSKSP-EERHKIESFVSSEFRRNAKQIDRKNFQYIEYLLRLGKKQLEQLKNPDTIGLSSLTVNSSQTR 94          
The following BLAST results are available for this feature:
BLAST of NO02G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855485.15.300e-2977.53lyr family of fe s cluster biogenesis protein [Nan... [more]
CCA23842.11.000e-1152.33conserved hypothetical protein [Albugo laibachii N... [more]
XP_018480726.13.600e-947.62PREDICTED: succinate dehydrogenase assembly factor... [more]
XP_009141831.14.700e-947.62PREDICTED: succinate dehydrogenase assembly factor... [more]
XP_013677145.11.000e-848.81succinate dehydrogenase assembly factor 1, mitocho... [more]
XP_020519304.11.400e-843.30succinate dehydrogenase assembly factor 1A, mitoch... [more]
XP_023639404.13.000e-847.06succinate dehydrogenase assembly factor 1, mitocho... [more]
EJK72606.13.900e-847.37hypothetical protein THAOC_05844 [Thalassiosira oc... [more]
XP_023639405.15.100e-847.62succinate dehydrogenase assembly factor 1, mitocho... [more]
CDP00907.15.100e-844.32unnamed protein product [Coffea canephora][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006768NSK006768Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01480.1NO02G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573929gene_727Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01480.1NO02G01480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01480 ID=NO02G01480|Name=NO02G01480|organism=Nannochloropsis oceanica|type=gene|length=884bp
ATGGTGGTGTCTATGCAGGTACTGCCCCTCCGCTCCTCCCATCTGATCCA
AGAAAAGGAGGTGGCAGTGTTGGTGGCAACATTCGTGACCCCCGACGAAG
GGATTGGGGACAAGACCGACGAGgtgctgggggaggggcaggcggtggag
tctatcggtagacagagagaactgcttgatttcttgtgctgtactgacca
attcggatagttgtatagccatgagagggtgtgtcggtattggcgcgaag
ggacgacgagaggcctttacaattagagaaagtttcagcctgcgtaaggt
ttgttgcgtagcaaggccgaaggttccttcaccctttttaaacgaacacg
aaaagcaaagacaacgtttccaaccgaaaggcatgcggtgcaggcaggtt
cttcttccatccacgtcgtgtcgatccacaggtccttttctttccccccc
ttcatcctctcgggtcctccgctgcggctgccgcactttcatccactctt
gaatttcctcgctccatgattccatcatcaccttagatgcactgtcctat
tcacacctaattatgtgtcctctccgttattcctccccgcccacagGAGC
TAAGAATGACTCCGCAACGGGCATCGGGGCTACAAAAAGAAGTTCTCAGC
CTCTACCGGCAGCTTTTGCGCGCCGCCCGGCGGAAAGATCCCACCAAAGA
GGATGGGGGGACATGGACACTTGCCCGTACTCGCTTCCGGGAGGACGCTG
GGTCGGTCAAGCGGATGGATTTCCAAAAGATTGAGTTTCTGTTGCGCCAT
GGCCGAAAGCAGCTCAAATACCTGGACATGCCCAGCTTCGTCAAGGGCAC
TTCCGTCACGCCCTCCTCATCGCCATCTAGATGA
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protein sequence of NO02G01480.1

>NO02G01480.1-protein ID=NO02G01480.1-protein|Name=NO02G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MVVSMQVLPLRSSHLIQEKEVAVLVATFVTPDEGIGDKTDEELRMTPQRA
SGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDF
QKIEFLLRHGRKQLKYLDMPSFVKGTSVTPSSSPSR*
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Synonyms
Publications