NO02G01480, NO02G01480 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_005855485.1 (lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526] >XP_005855854.1 lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526] >EKU20503.1 lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526] >EKU20872.1 lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 136.7 bits (343), Expect = 5.300e-29 Identity = 69/89 (77.53%), Postives = 79/89 (88.76%), Query Frame = 0 Query: 45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSVTPSSS 134 M+PQRASGLQKEVLSLYR++LRAAR KD K DGGT+TLARTRFREDA SV RMDFQKIEFL+R G KQLKYL+MPS ++G SVTPS++ Sbjct: 1 MSPQRASGLQKEVLSLYRRVLRAARVKDAGKIDGGTYTLARTRFREDATSVSRMDFQKIEFLIRQGHKQLKYLNMPSVLRGASVTPSAA 89
BLAST of NO02G01480 vs. NCBI_GenBank
Match: CCA23842.1 (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 79.3 bits (194), Expect = 1.000e-11 Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0 Query: 51 SGLQKEVLSLYRQLLRAARRKDPTKED--GGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSVTPSSSP 135 SGLQK+VL LY+ LL AA++KD ED G T++ R RFRE+A SV R DF KIE+LLR G + LK +D TSV S+ P Sbjct: 6 SGLQKQVLKLYKSLLSAAKQKDQGGEDRRGSTYSYVRERFRENAESVDRSDFAKIEYLLRKGERDLKMVDRIKSANITSVQHSNKP 91
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_018480726.1 (PREDICTED: succinate dehydrogenase assembly factor 1A, mitochondrial [Raphanus sativus] >XP_018480727.1 PREDICTED: succinate dehydrogenase assembly factor 1A, mitochondrial [Raphanus sativus]) HSP 1 Score: 70.9 bits (172), Expect = 3.600e-9 Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 0 Query: 45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSV 129 M + SG+QK+VLSLYR LRAAR K T++ T+ T FR+++ V R +FQ IE+LLR G KQL L P V +SV Sbjct: 1 MGATKLSGMQKQVLSLYRGFLRAARSKQTTEDRRRIETIVSTEFRKNSKEVDRKNFQYIEYLLRLGHKQLDQLKSPDMVSISSV 84
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_009141831.1 (PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Brassica rapa] >XP_009141832.1 PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Brassica rapa] >XP_013636209.1 PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Brassica oleracea var. oleracea]) HSP 1 Score: 70.5 bits (171), Expect = 4.700e-9 Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 0 Query: 45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSV 129 M + SG+QK+VLSLYR LRAAR K T++ T+ T FR+++ V R +FQ IE+LLR G KQL L P V +SV Sbjct: 1 MGATKLSGMQKQVLSLYRGFLRAARSKPTTEDRKRIETIVSTEFRKNSKEVDRKNFQYIEYLLRLGHKQLDQLKSPDMVSISSV 84
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_013677145.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Brassica napus]) HSP 1 Score: 69.3 bits (168), Expect = 1.000e-8 Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 0 Query: 45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSV 129 M + SG+QK+VLSLYR LRAAR K PT++ T+ T FR+++ V R +FQ IE+LLR G KQL L P V +SV Sbjct: 1 MGATKLSGMQKQVLSLYRGFLRAARSK-PTEDRKRIETIVSTEFRKNSKEVDRKNFQYIEYLLRLGHKQLDQLKSPDMVSISSV 83
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_020519304.1 (succinate dehydrogenase assembly factor 1A, mitochondrial [Amborella trichopoda] >ERN00196.1 hypothetical protein AMTR_s00111p00093600 [Amborella trichopoda]) HSP 1 Score: 68.9 bits (167), Expect = 1.400e-8 Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 0 Query: 34 GIGDKTDEELRMTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSVTP 131 G+G +T + L SGLQ+EVL LYR LRAARRK P +E + R+ FR+ A V DF ++E+LLR G+KQL+ L+ P + +S+ P Sbjct: 17 GMGTRTRKVL-------SGLQREVLGLYRGFLRAARRKGP-EERSEIEAVVRSEFRKMAVLVDAKDFMRVEYLLRRGKKQLEQLNTPETLSISSLKP 105
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_023639404.1 (succinate dehydrogenase assembly factor 1, mitochondrial isoform X1 [Capsella rubella]) HSP 1 Score: 67.8 bits (164), Expect = 3.000e-8 Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 0 Query: 44 RMTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSV 129 +M + SG+QK+VLSLYR LRAAR K PT++ ++ T FR ++ V R +FQ IE+LLR G KQL L P V +SV Sbjct: 25 KMGAAKLSGMQKQVLSLYRGFLRAARSK-PTEDRKRIESIVSTEFRHNSKEVDRKNFQYIEYLLRLGTKQLDQLKSPDIVSLSSV 108
BLAST of NO02G01480 vs. NCBI_GenBank
Match: EJK72606.1 (hypothetical protein THAOC_05844 [Thalassiosira oceanica]) HSP 1 Score: 67.4 bits (163), Expect = 3.900e-8 Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 0 Query: 48 QRASGLQKEVLSLYRQLLRAAR---RKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMP 121 +R SGLQK+VL+LYR +LR A R+ K + ++ AR +FR++A SV+R DF++IE+ +R G KQLK + MP Sbjct: 3 RRLSGLQKDVLALYRSILRQASVIDRQRQCKGETSSFVHAREKFRKEAMSVRRSDFKRIEYKIRKGEKQLKLMKMP 78
BLAST of NO02G01480 vs. NCBI_GenBank
Match: XP_023639405.1 (succinate dehydrogenase assembly factor 1, mitochondrial isoform X2 [Capsella rubella] >EOA26322.1 hypothetical protein CARUB_v10025335mg [Capsella rubella]) HSP 1 Score: 67.0 bits (162), Expect = 5.100e-8 Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 0 Query: 45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSV 129 M + SG+QK+VLSLYR LRAAR K PT++ ++ T FR ++ V R +FQ IE+LLR G KQL L P V +SV Sbjct: 1 MGAAKLSGMQKQVLSLYRGFLRAARSK-PTEDRKRIESIVSTEFRHNSKEVDRKNFQYIEYLLRLGTKQLDQLKSPDIVSLSSV 83
BLAST of NO02G01480 vs. NCBI_GenBank
Match: CDP00907.1 (unnamed protein product [Coffea canephora]) HSP 1 Score: 67.0 bits (162), Expect = 5.100e-8 Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 0 Query: 49 RASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSVTPSSSPSR 137 R SG+QK+VL+LYR LRAA K P +E + + FR +A + R +FQ IE+LLR G+KQL+ L P + +S+T +SS +R Sbjct: 8 RLSGMQKQVLALYRGFLRAAHSKSP-EERHKIESFVSSEFRRNAKQIDRKNFQYIEYLLRLGKKQLEQLKNPDTIGLSSLTVNSSQTR 94 The following BLAST results are available for this feature:
BLAST of NO02G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G01480 ID=NO02G01480|Name=NO02G01480|organism=Nannochloropsis oceanica|type=gene|length=884bpback to top protein sequence of NO02G01480.1 >NO02G01480.1-protein ID=NO02G01480.1-protein|Name=NO02G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bpback to top Synonyms
Publications
|