NO02G01480.1, NO02G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01480.1
Unique NameNO02G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length411
Alignment locationchr2:440221..441104 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:440221..441104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01480.1 vs.
Match: XP_005855485.1 (lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526]; XP_005855854.1 lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526]; EKU20503.1 lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526]; EKU20872.1 lyr family of fe s cluster biogenesis protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 136.7 bits (343), Expect = 5.300e-29
Identity = 69/89 (77.53%), Postives = 79/89 (88.76%), Query Frame = 0 
Query:   45 MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSVTPSSS 134
            M+PQRASGLQKEVLSLYR++LRAAR KD  K DGGT+TLARTRFREDA SV RMDFQKIEFL+R G KQLKYL+MPS ++G SVTPS++
Sbjct:    1 MSPQRASGLQKEVLSLYRRVLRAARVKDAGKIDGGTYTLARTRFREDATSVSRMDFQKIEFLIRQGHKQLKYLNMPSVLRGASVTPSAA 89
The following BLAST results are available for this feature:
BLAST of NO02G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855485.15.300e-2977.53lyr family of fe s cluster biogenesis protein [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01480NO02G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01480.1NO02G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01480.1.cds1NO02G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01480.1.cds2NO02G01480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01480.1 ID=NO02G01480.1|Name=NO02G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=411bp
ATGGTGGTGTCTATGCAGGTACTGCCCCTCCGCTCCTCCCATCTGATCCA
AGAAAAGGAGGTGGCAGTGTTGGTGGCAACATTCGTGACCCCCGACGAAG
GGATTGGGGACAAGACCGACGAGGAGCTAAGAATGACTCCGCAACGGGCA
TCGGGGCTACAAAAAGAAGTTCTCAGCCTCTACCGGCAGCTTTTGCGCGC
CGCCCGGCGGAAAGATCCCACCAAAGAGGATGGGGGGACATGGACACTTG
CCCGTACTCGCTTCCGGGAGGACGCTGGGTCGGTCAAGCGGATGGATTTC
CAAAAGATTGAGTTTCTGTTGCGCCATGGCCGAAAGCAGCTCAAATACCT
GGACATGCCCAGCTTCGTCAAGGGCACTTCCGTCACGCCCTCCTCATCGC
CATCTAGATGA
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protein sequence of NO02G01480.1

>NO02G01480.1-protein ID=NO02G01480.1-protein|Name=NO02G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MVVSMQVLPLRSSHLIQEKEVAVLVATFVTPDEGIGDKTDEELRMTPQRA
SGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGSVKRMDF
QKIEFLLRHGRKQLKYLDMPSFVKGTSVTPSSSPSR*
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mRNA from alignment at chr2:440221..441104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01480.1 ID=NO02G01480.1|Name=NO02G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=884bp|location=Sequence derived from alignment at chr2:440221..441104+ (Nannochloropsis oceanica)
ATGGTGGTGTCTATGCAGGTACTGCCCCTCCGCTCCTCCCATCTGATCCA
AGAAAAGGAGGTGGCAGTGTTGGTGGCAACATTCGTGACCCCCGACGAAG
GGATTGGGGACAAGACCGACGAGGTGCTGGGGGAGGGGCAGGCGGTGGAG
TCTATCGGTAGACAGAGAGAACTGCTTGATTTCTTGTGCTGTACTGACCA
ATTCGGATAGTTGTATAGCCATGAGAGGGTGTGTCGGTATTGGCGCGAAG
GGACGACGAGAGGCCTTTACAATTAGAGAAAGTTTCAGCCTGCGTAAGGT
TTGTTGCGTAGCAAGGCCGAAGGTTCCTTCACCCTTTTTAAACGAACACG
AAAAGCAAAGACAACGTTTCCAACCGAAAGGCATGCGGTGCAGGCAGGTT
CTTCTTCCATCCACGTCGTGTCGATCCACAGGTCCTTTTCTTTCCCCCCC
TTCATCCTCTCGGGTCCTCCGCTGCGGCTGCCGCACTTTCATCCACTCTT
GAATTTCCTCGCTCCATGATTCCATCATCACCTTAGATGCACTGTCCTAT
TCACACCTAATTATGTGTCCTCTCCGTTATTCCTCCCCGCCCACAGGAGC
TAAGAATGACTCCGCAACGGGCATCGGGGCTACAAAAAGAAGTTCTCAGC
CTCTACCGGCAGCTTTTGCGCGCCGCCCGGCGGAAAGATCCCACCAAAGA
GGATGGGGGGACATGGACACTTGCCCGTACTCGCTTCCGGGAGGACGCTG
GGTCGGTCAAGCGGATGGATTTCCAAAAGATTGAGTTTCTGTTGCGCCAT
GGCCGAAAGCAGCTCAAATACCTGGACATGCCCAGCTTCGTCAAGGGCAC
TTCCGTCACGCCCTCCTCATCGCCATCTAGATGA
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Coding sequence (CDS) from alignment at chr2:440221..441104+

>NO02G01480.1 ID=NO02G01480.1|Name=NO02G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at chr2:440221..441104+ (Nannochloropsis oceanica)
ATGGTGGTGTCTATGCAGGTACTGCCCCTCCGCTCCTCCCATCTGATCCA
AGAAAAGGAGGTGGCAGTGTTGGTGGCAACATTCGTGACCCCCGACGAAG
GGATTGGGGACAAGACCGACGAGGAGCTAAGAATGACTCCGCAACGGGCA
TCGGGGCTACAAAAAGAAGTTCTCAGCCTCTACCGGCAGCTTTTGCGCGC
CGCCCGGCGGAAAGATCCCACCAAAGAGGATGGGGGGACATGGACACTTG
CCCGTACTCGCTTCCGGGAGGACGCTGGGTCGGTCAAGCGGATGGATTTC
CAAAAGATTGAGTTTCTGTTGCGCCATGGCCGAAAGCAGCTCAAATACCT
GGACATGCCCAGCTTCGTCAAGGGCACTTCCGTCACGCCCTCCTCATCGC
CATCTAGATGA
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Synonyms
Publications