NO02G01100, NO02G01100 (gene) Nannochloropsis oceanica

Overview
NameNO02G01100
Unique NameNO02G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1488
Alignment locationchr2:348452..349939 +

Link to JBrowse

Properties
Property NameValue
DescriptionRrna maturation factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:348452..349939 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
Vocabulary: INTERPRO
TermDefinition
IPR002036YbeY
Homology
BLAST of NO02G01100 vs. NCBI_GenBank
Match: EWM30489.1 (rrna maturation factor [Nannochloropsis gaditana])

HSP 1 Score: 296.2 bits (757), Expect = 1.900e-76
Identity = 141/193 (73.06%), Postives = 168/193 (87.05%), Query Frame = 0
Query:  246 LGTIQIRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQCARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVISEFARRF-----PEAAPPM 434
            LGTIQIRNSQR+I+LD+D+LH  +R I+EI+GK DHDVSLWLTNDRSIREYNDRYRGKR+ATDILSFPFHEY++PG+PT ES AL G++KDLGDM+VS  YVQRQC RD+ADW  +GEN WS ERGASGAMARV+ VQ RLPFLVIHG+LHLLG+DHET+K+Y EMV+EE+RV++EF ++F      EAAP M
Sbjct:  210 LGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEM 402          
BLAST of NO02G01100 vs. NCBI_GenBank
Match: XP_009032744.1 (hypothetical protein AURANDRAFT_18863 [Aureococcus anophagefferens] >EGB13148.1 hypothetical protein AURANDRAFT_18863 [Aureococcus anophagefferens])

HSP 1 Score: 149.8 bits (377), Expect = 2.200e-32
Identity = 77/178 (43.26%), Postives = 117/178 (65.73%), Query Frame = 0
Query:  246 LGTIQIRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPGVPTPESVALNGQIK-DLGDMMVSTGYVQRQCARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVISEF 423
            +GT+ IRN+QRSI +D+D + +  R ++E +   + DV +WLT D +IR+YN R+RG R +TDILSFPFH+  +PG   P++V  + +   +LGDM+VS  YV+R+  +D       G    +  RG + AMA V DV+ R+  L++HGL HLL YDHET+ E+E+MV  E+ ++  +
Sbjct:   36 VGTVLIRNTQRSIPIDVDAVESVTRALLERLRCSEFDVGIWLTTDATIRKYNTRFRGMRKSTDILSFPFHDELAPGA-LPDAVDRDDEDDLNLGDMVVSVPYVRRRAEKD-------GGRDHAPGRGVAAAMAPVADVEERIHMLLVHGLCHLLNYDHETDDEFEDMVALEDELLETY 205          
BLAST of NO02G01100 vs. NCBI_GenBank
Match: XP_002176621.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51084.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 130.6 bits (327), Expect = 1.400e-26
Identity = 71/173 (41.04%), Postives = 109/173 (63.01%), Query Frame = 0
Query:  247 GTIQIRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQCARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVI 420
            G I + N+Q S+++D++ L   I  I +++G   +DVSL L +D+ +RE N+  RG    TD+LSFPF E   PGV TP  V + G   ++GDMM+   YV R C +D+A ++    +   E+RG S AMA V D + R+  L++HG+LHL+GYDH  + +Y+ MV +EE ++
Sbjct:   16 GDIYVENNQESLNIDLERLKATIAKIRDLMGYRTYDVSLLLVDDQEMRETNEETRGMDEPTDVLSFPFTEAIEPGVLTPPVVDI-GDYYNMGDMMIDVPYVIRAC-QDDAKYS--HSDLEDEDRGVSAAMAMVMDPEERINMLLVHGMLHLVGYDHIDDDDYQLMVAKEEEIL 184          
BLAST of NO02G01100 vs. NCBI_GenBank
Match: CBJ32782.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.2 bits (326), Expect = 1.800e-26
Identity = 77/185 (41.62%), Postives = 102/185 (55.14%), Query Frame = 0
Query:  247 GTIQIRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYK-SPGVPTPESVALNGQIKDLGDMMVSTGYVQRQCARDE-----------ADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVI 420
            GT  ++N Q+   +D   L + +R  ME++G    DV   LT D+ +   N +YRG  ++TDILSFP H+   SPGV     V    ++ DLGDM +S  YV RQ  RD                         ERG SGAM+RV+DVQ R   L++HGL+HLLGYDHETE +Y+ MV  EE V+
Sbjct:  104 GTASVQNEQKEYEIDTAELQSKMRQTMEVLGCQAWDVGAVLTTDKEVFRLNRQYRGMSTSTDILSFPNHDMSGSPGV--LPKVRFPAEM-DLGDMFISLAYVDRQIKRDRXXXXXXXXXXXXXXXXXXXXXXXSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 285          
BLAST of NO02G01100 vs. NCBI_GenBank
Match: CEM03215.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 129.4 bits (324), Expect = 3.100e-26
Identity = 73/180 (40.56%), Postives = 110/180 (61.11%), Query Frame = 0
Query:  247 GTIQIRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQCARDEADWAAEGENQW---SEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVISEFA 424
            G I + NSQR I+LD+ +L   I+ I +IIG    D+ + L +++ ++  N  +R K   TDILSF   +   PG   P+    + +  DLGD+ +S  YVQ +C  D A+  A+ E+     S ERG SGAMA+ + V+ RLP LVIHG+LHLLGYD +++ ++  MV  EE+VI +++
Sbjct:  145 GEITLTNSQREIALDMGLLERQIKHIRDIIGVSAFDIGVELVDNQRMQHLNRDFRAKDRPTDILSFRCFDDIEPG-SLPK--VTSAEDLDLGDIFISAEYVQERCDEDRAEMEAQLEDNGEFVSTERGVSGAMAKTFTVRERLPLLVIHGILHLLGYDDQSDSDWSMMVNREEQVIKQYS 321          
BLAST of NO02G01100 vs. NCBI_GenBank
Match: GAX12510.1 (hypothetical protein FisN_24Hh086 [Fistulifera solaris])

HSP 1 Score: 116.7 bits (291), Expect = 2.100e-22
Identity = 73/190 (38.42%), Postives = 104/190 (54.74%), Query Frame = 0
Query:  247 GTIQIRNSQRSISLDIDV--LHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQCARDE---ADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVISEFARRFPEAAP 432
            G I  +N Q ++ L+ID   L   +  I   IG + + VSL L  D  ++E N   RG  + TDILSFPF EY  PG   P    +    + LGD++V   YV R+C  D+                  G SGAMAR+YD + R+  L+IHG+LHL+GYDHE +++YE MV +EE +++E     P+ +P
Sbjct:   51 GKILFQNDQTNV-LEIDEARLLETLNRIRRHIGYETYGVSLELIGDEEMQEINLESRGVDAPTDILSFPFSEYIEPGTLEPPQFDIPDYYQ-LGDLLVDVPYVMRRCQEDKXXXXXXXXXXXXXXXXXXGVSGAMARIYDAEERIHMLLIHGMLHLVGYDHEDDEDYELMVAKEEEILAELG-MLPKQSP 237          
BLAST of NO02G01100 vs. NCBI_GenBank
Match: OEU18568.1 (zincin, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 110.2 bits (274), Expect = 1.900e-20
Identity = 71/196 (36.22%), Postives = 108/196 (55.10%), Query Frame = 0
Query:  247 GTIQIRNSQRSI-SLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKD----------LGDMMVSTGYVQRQCARD----------EADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVISE 422
            G + I N Q+SI  ++ D + + I  I ++IG D +DV++ L +D  +RE N   RG  S TDILSFPFH+   P     ++ A  G +++          LGDM++   YV R+C  D          + D +  G  +   +RG  GAMA V D + R+  L++HG+LHL+GYDH  +++Y EMV  EE ++ E
Sbjct:   15 GCVSIYNDQKSIKGINEDAISDTISKISKLIGYDTYDVTVLLVDDEEMRETNLESRGIDSPTDILSFPFHQ---PNFTANDNEA--GLLEEPEFDIPDYYTLGDMVICVPYVIRRCQEDILALGDDNDYDDDESDVGGVENDGDRGVCGAMADVRDPEKRIRMLLVHGMLHLVGYDHIEDEDYIEMVEREEEILKE 205          
BLAST of NO02G01100 vs. NCBI_GenBank
Match: GAX22805.1 (hypothetical protein FisN_24Lh086 [Fistulifera solaris])

HSP 1 Score: 109.0 bits (271), Expect = 4.300e-20
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 0
Query:  276 IGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQCARDE---ADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVISEFARRFPEAAP 432
            IG + + VSL L  D  ++  N   RG  + +DILSFPF +Y  PG   P    +    + LGD++V   YV R+C  D+                  G SGAMAR+YD + R+  L++HG+LHL+GYDHE + +YE MV +EE +++E    FP+ +P
Sbjct:   79 IGYETYGVSLELIGDEEMQAVNLESRGVDAPSDILSFPFSDYIEPGTLEPPQFDIPDYYQ-LGDLLVDVPYVMRRCQEDKEYXXXXXXXXXXXXXXXXGVSGAMARIYDAEERIHMLLVHGMLHLVGYDHEDDDDYELMVAKEEEILAELG-MFPKHSP 235          
BLAST of NO02G01100 vs. NCBI_GenBank
Match: KKP26486.1 (hypothetical protein UR12_C0037G0005 [candidate division TM6 bacterium GW2011_GWF2_30_66])

HSP 1 Score: 107.1 bits (266), Expect = 1.600e-19
Identity = 60/179 (33.52%), Postives = 102/179 (56.98%), Query Frame = 0
Query:  249 IQIRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPG---VPTPESVALNGQIKD---LGDMMVSTGYVQRQCARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVISE 422
            I I+N+QR I ++   + +H++ I++I+  +++DV +WLT +++IREYN  +R K   TDILSFPF+    PG    P P++ A   QI+D   LGD+++S  + Q+       D      N   +      A+    +    L  L++HGL HL+GYDH  E++Y+ M ++E  ++ +
Sbjct:    2 IIIKNTQRKIKINTKKIEHHVKQILKILKYENYDVGIWLTTNKTIREYNKNFRKKDKPTDILSFPFYTELKPGERIKPLPKT-ATKEQIQDSQNLGDIIISPEFAQK-------DLFTTASNTKDQSASKKNAINNGANFDQHLKILLVHGLCHLIGYDHIKEQDYKIMHKKEMAILEK 172          
BLAST of NO02G01100 vs. NCBI_GenBank
Match: KKP25835.1 (hypothetical protein UR14_C0004G0087 [candidate division TM6 bacterium GW2011_GWE2_31_21] >KKP53007.1 hypothetical protein UR43_C0008G0089 [candidate division TM6 bacterium GW2011_GWF2_33_332])

HSP 1 Score: 104.8 bits (260), Expect = 8.100e-19
Identity = 59/177 (33.33%), Postives = 97/177 (54.80%), Query Frame = 0
Query:  249 IQIRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPG----VPTPESVALNGQIKDLGDMMVSTGYVQRQCARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVISE 422
            I I+NSQ+ I +DI+ +   ++ ++  +   D DVSLW T D +IR++N +YR K  ATDILSFP+H +  PG    + T E         +LGD+++S  +V++    D  D+                    +Y     +  L++HG+ HLLGYDHET+ +++ M + E+ ++SE
Sbjct:    2 IFIKNSQKKIKIDINKIEQKLQKLLNFLKMKDFDVSLWFTTDTTIRKFNKKYRKKDKATDILSFPYHVHLKPGQKIEIKTEED-------NNLGDIIISLKFVKKHSELDGVDF-------------------NLY-----INILLVHGIAHLLGYDHETDSDFKVMQKFEKSLLSE 147          
The following BLAST results are available for this feature:
BLAST of NO02G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30489.11.900e-7673.06rrna maturation factor [Nannochloropsis gaditana][more]
XP_009032744.12.200e-3243.26hypothetical protein AURANDRAFT_18863 [Aureococcus... [more]
XP_002176621.11.400e-2641.04predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBJ32782.11.800e-2641.62conserved unknown protein [Ectocarpus siliculosus][more]
CEM03215.13.100e-2640.56unnamed protein product [Vitrella brassicaformis C... [more]
GAX12510.12.100e-2238.42hypothetical protein FisN_24Hh086 [Fistulifera sol... [more]
OEU18568.11.900e-2036.22zincin, partial [Fragilariopsis cylindrus CCMP1102... [more]
GAX22805.14.300e-2038.36hypothetical protein FisN_24Lh086 [Fistulifera sol... [more]
KKP26486.11.600e-1933.52hypothetical protein UR12_C0037G0005 [candidate di... [more]
KKP25835.18.100e-1933.33hypothetical protein UR14_C0004G0087 [candidate di... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006722NSK006722Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01100.1NO02G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573811gene_691Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g95gene123Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01100.1NO02G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01100 ID=NO02G01100|Name=NO02G01100|organism=Nannochloropsis oceanica|type=gene|length=1488bp
ATGCCACAGCGCTTCCCCTTCTCCTCAAGCCCGATGGTGCTAATTCTCCT
GTGCACCGTGACAAGAGAAGCGTTCGGTTTTCAGCGTGGTATCATCGTTC
CCACACATATGCGCCGTGCCATGGGATCTTTTTCGACGTGGACCTCACCC
CTCTCCTCCCTCTCCTACTCCTCTTCATCCTCATCCTCGTCTTTTGCTTC
TTCATCGGTGACGGTGACGACAGCCAGATTAAGCTCTTTTCACCGCCACC
GTTCTCCGTTTATGCCGCCCACCAACACGGCACTCTTTGCATCCTCGACC
GCCTCATCAGGTGCTGGGAAGAAGAAAAAGGCAGCCTCGTTAAAATCAAA
GGCATCGGTCAAGAAGGTGATTGAGGACGAGGAGGACGACGAGGATGAGA
TGACCGAGGCAGAGTTGCTAAAAGTGATGCAAAGCGGTGAGGCTATGGAT
GCGGTGTGGCAGCGTATGATGAGTCAGATGGAAAGGACGGGGGCATTGGA
AGGTGAAGATGATAAGGAGGAGGATGACGACGACGAAGACGAGGACGAAG
ATGAGGATGGTGACAAGGAAGATAACGCTGAGGAGGACCTTTCGGGAAAT
GACGATAGCGATGACGACGATGACAACGATGACAGCAACGCCGTAAAGAT
CGATGCCATGGACCGCAAGCATGGCCTTCCCTCCTCCATGTCCTCCTCTT
CCTCCAGTCAAGACGAGGCAGAGAGCGACGACAACCTCGGCACGATTCAA
ATCCGGAATTCCCAAAGAAGCATCTCCTTGGACATAGATGTCTTGCACAA
TCATATACGTGGGATCATGGAAATCATCGGCAAAGATGACCATGATGTTT
CTCTTTGGTTGACCAACGACCGCAGTATCCGCGAGTACAATGACCGTTAC
AGGGGGAAACGCTCTGCGACGGATATTCTATCTTTCCCCTTCCACGAATA
TAAGTCTCCTGGCGTACCCACACCAGAATCAGTGGCATTGAATGGACAGA
TAAAAGATTTGGGGGATATGATGGTGTCGACTGGATACGTGCAACGGCAA
TGTGCCCGGGATGAGGCGGATTGGGCCGCGGAGGGGGAGAATCAGTGGTC
CGAGGAAAGGGGGGCCTCGGGGGCTATGGCGAGGGTATATGACGTCCAGG
GTCGGCTGCCCTTTTTGGTGATTCATGGACTTTTGCATTTGCTTGGGTAT
GATCACGAGACAGAGAAGGAGTATGAGGAGATGGTGAGGGAGGAGGAGAG
GGTGATAAGTGAGTTTGCGAGGAGGTTCCCGGAGGCGGCTCCACCGATGG
GAGAGCCAAAAAAATCGAAGGAGAGGAATATAGCTGCGGCAGCGGTGGGG
GAAGACGGAGGCAAGGCAAAAAAAAAGGCGTCAGGGGTAAGGGCGACGAA
GACAACAACAGCTCCTAAGAGGACTGCGAGTGCTGCTGCCAGCTCGAAGT
CCAAAGCCCCCCCAAAAAACGACTTTGACTCCAGATAA
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protein sequence of NO02G01100.1

>NO02G01100.1-protein ID=NO02G01100.1-protein|Name=NO02G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MPQRFPFSSSPMVLILLCTVTREAFGFQRGIIVPTHMRRAMGSFSTWTSP
LSSLSYSSSSSSSSFASSSVTVTTARLSSFHRHRSPFMPPTNTALFASST
ASSGAGKKKKAASLKSKASVKKVIEDEEDDEDEMTEAELLKVMQSGEAMD
AVWQRMMSQMERTGALEGEDDKEEDDDDEDEDEDEDGDKEDNAEEDLSGN
DDSDDDDDNDDSNAVKIDAMDRKHGLPSSMSSSSSSQDEAESDDNLGTIQ
IRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRY
RGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQ
CARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGY
DHETEKEYEEMVREEERVISEFARRFPEAAPPMGEPKKSKERNIAAAAVG
EDGGKAKKKASGVRATKTTTAPKRTASAAASSKSKAPPKNDFDSR*
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Synonyms
Publications