NO02G01100.1, NO02G01100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01100.1
Unique NameNO02G01100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1488
Alignment locationchr2:348452..349939 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:348452..349939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01100.1 vs.
Match: EWM30489.1 (rrna maturation factor [Nannochloropsis gaditana])

HSP 1 Score: 340.1 bits (871), Expect = 1.100e-89
Identity = 220/446 (49.33%), Postives = 283/446 (63.45%), Query Frame = 0 
Query:    6 PFSSSPMVLILLCTVTREAFGFQRGIIVPTHMRRAMGSFSTWTSPLSSLSYSSSSSSSSFASSSVTVTTARLSS---FHRHRSPFMPPTNTALFASSTASSGAGKKKKAASLKSKASVKK-VIEDEEDDEDEMTEAELLKVMQSGEAMDAVWQRMMSQMERTGALEGEDDKEEDDDDEDEDEDEDGDKEDNAEEDLSGNDDSDDDDDNDDSNAVKIDAMDRKHGLPSSMSSSSSSQDEAESDDNLGTIQIRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQCARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVISEFARRF-----PEAAPPMGEPKKSKER 443
            P SS+P++LI+              +   +  RR +G    W SPL   +    + +S F  S   ++T            RSPF   T      +++ S+G G ++K    K +    K V EDE +D  EMTE ELLK+MQSGEAMDAVWQRMMSQME   AL+ EDD++E+D +E + E+E+ ++E+  EE+                        + K  +       SS Q     D  LGTIQIRNSQR+I+LD+D+LH  +R I+EI+GK DHDVSLWLTNDRSIREYNDRYRGKR+ATDILSFPFHEY++PG+PT ES AL G++KDLGDM+VS  YVQRQC RD+ADW  +GEN WS ERGASGAMARV+ VQ RLPFLVIHG+LHLLG+DHET+K+Y EMV+EE+RV++EF ++F      EAAP M       +R
Sbjct:    3 PLSSTPLILIMF-------------LCYGSAPRRVLGFRIIWNSPLHYATPHLGARTSGFPPSQTALSTWSCCPPLVQSSRRSPFQSSTLRFAIPAASFSAGKGNERKVKDHKRRTPKNKHVDEDETNDVQEMTETELLKIMQSGEAMDAVWQRMMSQMEGMEALDSEDDEDEEDWEEFDKEEEEEEEEEEEEEE------------------------EEKEEVAVGRRVHSSFQSPFPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRGDAGGQR 411
The following BLAST results are available for this feature:
BLAST of NO02G01100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30489.11.100e-8949.33rrna maturation factor [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01100NO02G01100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01100.1NO02G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01100.1.cds1NO02G01100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01100.1 ID=NO02G01100.1|Name=NO02G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
ATGCCACAGCGCTTCCCCTTCTCCTCAAGCCCGATGGTGCTAATTCTCCT
GTGCACCGTGACAAGAGAAGCGTTCGGTTTTCAGCGTGGTATCATCGTTC
CCACACATATGCGCCGTGCCATGGGATCTTTTTCGACGTGGACCTCACCC
CTCTCCTCCCTCTCCTACTCCTCTTCATCCTCATCCTCGTCTTTTGCTTC
TTCATCGGTGACGGTGACGACAGCCAGATTAAGCTCTTTTCACCGCCACC
GTTCTCCGTTTATGCCGCCCACCAACACGGCACTCTTTGCATCCTCGACC
GCCTCATCAGGTGCTGGGAAGAAGAAAAAGGCAGCCTCGTTAAAATCAAA
GGCATCGGTCAAGAAGGTGATTGAGGACGAGGAGGACGACGAGGATGAGA
TGACCGAGGCAGAGTTGCTAAAAGTGATGCAAAGCGGTGAGGCTATGGAT
GCGGTGTGGCAGCGTATGATGAGTCAGATGGAAAGGACGGGGGCATTGGA
AGGTGAAGATGATAAGGAGGAGGATGACGACGACGAAGACGAGGACGAAG
ATGAGGATGGTGACAAGGAAGATAACGCTGAGGAGGACCTTTCGGGAAAT
GACGATAGCGATGACGACGATGACAACGATGACAGCAACGCCGTAAAGAT
CGATGCCATGGACCGCAAGCATGGCCTTCCCTCCTCCATGTCCTCCTCTT
CCTCCAGTCAAGACGAGGCAGAGAGCGACGACAACCTCGGCACGATTCAA
ATCCGGAATTCCCAAAGAAGCATCTCCTTGGACATAGATGTCTTGCACAA
TCATATACGTGGGATCATGGAAATCATCGGCAAAGATGACCATGATGTTT
CTCTTTGGTTGACCAACGACCGCAGTATCCGCGAGTACAATGACCGTTAC
AGGGGGAAACGCTCTGCGACGGATATTCTATCTTTCCCCTTCCACGAATA
TAAGTCTCCTGGCGTACCCACACCAGAATCAGTGGCATTGAATGGACAGA
TAAAAGATTTGGGGGATATGATGGTGTCGACTGGATACGTGCAACGGCAA
TGTGCCCGGGATGAGGCGGATTGGGCCGCGGAGGGGGAGAATCAGTGGTC
CGAGGAAAGGGGGGCCTCGGGGGCTATGGCGAGGGTATATGACGTCCAGG
GTCGGCTGCCCTTTTTGGTGATTCATGGACTTTTGCATTTGCTTGGGTAT
GATCACGAGACAGAGAAGGAGTATGAGGAGATGGTGAGGGAGGAGGAGAG
GGTGATAAGTGAGTTTGCGAGGAGGTTCCCGGAGGCGGCTCCACCGATGG
GAGAGCCAAAAAAATCGAAGGAGAGGAATATAGCTGCGGCAGCGGTGGGG
GAAGACGGAGGCAAGGCAAAAAAAAAGGCGTCAGGGGTAAGGGCGACGAA
GACAACAACAGCTCCTAAGAGGACTGCGAGTGCTGCTGCCAGCTCGAAGT
CCAAAGCCCCCCCAAAAAACGACTTTGACTCCAGATAA
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protein sequence of NO02G01100.1

>NO02G01100.1-protein ID=NO02G01100.1-protein|Name=NO02G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MPQRFPFSSSPMVLILLCTVTREAFGFQRGIIVPTHMRRAMGSFSTWTSP
LSSLSYSSSSSSSSFASSSVTVTTARLSSFHRHRSPFMPPTNTALFASST
ASSGAGKKKKAASLKSKASVKKVIEDEEDDEDEMTEAELLKVMQSGEAMD
AVWQRMMSQMERTGALEGEDDKEEDDDDEDEDEDEDGDKEDNAEEDLSGN
DDSDDDDDNDDSNAVKIDAMDRKHGLPSSMSSSSSSQDEAESDDNLGTIQ
IRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRY
RGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQ
CARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGY
DHETEKEYEEMVREEERVISEFARRFPEAAPPMGEPKKSKERNIAAAAVG
EDGGKAKKKASGVRATKTTTAPKRTASAAASSKSKAPPKNDFDSR*
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mRNA from alignment at chr2:348452..349939+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01100.1 ID=NO02G01100.1|Name=NO02G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp|location=Sequence derived from alignment at chr2:348452..349939+ (Nannochloropsis oceanica)
ATGCCACAGCGCTTCCCCTTCTCCTCAAGCCCGATGGTGCTAATTCTCCT
GTGCACCGTGACAAGAGAAGCGTTCGGTTTTCAGCGTGGTATCATCGTTC
CCACACATATGCGCCGTGCCATGGGATCTTTTTCGACGTGGACCTCACCC
CTCTCCTCCCTCTCCTACTCCTCTTCATCCTCATCCTCGTCTTTTGCTTC
TTCATCGGTGACGGTGACGACAGCCAGATTAAGCTCTTTTCACCGCCACC
GTTCTCCGTTTATGCCGCCCACCAACACGGCACTCTTTGCATCCTCGACC
GCCTCATCAGGTGCTGGGAAGAAGAAAAAGGCAGCCTCGTTAAAATCAAA
GGCATCGGTCAAGAAGGTGATTGAGGACGAGGAGGACGACGAGGATGAGA
TGACCGAGGCAGAGTTGCTAAAAGTGATGCAAAGCGGTGAGGCTATGGAT
GCGGTGTGGCAGCGTATGATGAGTCAGATGGAAAGGACGGGGGCATTGGA
AGGTGAAGATGATAAGGAGGAGGATGACGACGACGAAGACGAGGACGAAG
ATGAGGATGGTGACAAGGAAGATAACGCTGAGGAGGACCTTTCGGGAAAT
GACGATAGCGATGACGACGATGACAACGATGACAGCAACGCCGTAAAGAT
CGATGCCATGGACCGCAAGCATGGCCTTCCCTCCTCCATGTCCTCCTCTT
CCTCCAGTCAAGACGAGGCAGAGAGCGACGACAACCTCGGCACGATTCAA
ATCCGGAATTCCCAAAGAAGCATCTCCTTGGACATAGATGTCTTGCACAA
TCATATACGTGGGATCATGGAAATCATCGGCAAAGATGACCATGATGTTT
CTCTTTGGTTGACCAACGACCGCAGTATCCGCGAGTACAATGACCGTTAC
AGGGGGAAACGCTCTGCGACGGATATTCTATCTTTCCCCTTCCACGAATA
TAAGTCTCCTGGCGTACCCACACCAGAATCAGTGGCATTGAATGGACAGA
TAAAAGATTTGGGGGATATGATGGTGTCGACTGGATACGTGCAACGGCAA
TGTGCCCGGGATGAGGCGGATTGGGCCGCGGAGGGGGAGAATCAGTGGTC
CGAGGAAAGGGGGGCCTCGGGGGCTATGGCGAGGGTATATGACGTCCAGG
GTCGGCTGCCCTTTTTGGTGATTCATGGACTTTTGCATTTGCTTGGGTAT
GATCACGAGACAGAGAAGGAGTATGAGGAGATGGTGAGGGAGGAGGAGAG
GGTGATAAGTGAGTTTGCGAGGAGGTTCCCGGAGGCGGCTCCACCGATGG
GAGAGCCAAAAAAATCGAAGGAGAGGAATATAGCTGCGGCAGCGGTGGGG
GAAGACGGAGGCAAGGCAAAAAAAAAGGCGTCAGGGGTAAGGGCGACGAA
GACAACAACAGCTCCTAAGAGGACTGCGAGTGCTGCTGCCAGCTCGAAGT
CCAAAGCCCCCCCAAAAAACGACTTTGACTCCAGATAA
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Coding sequence (CDS) from alignment at chr2:348452..349939+

>NO02G01100.1 ID=NO02G01100.1|Name=NO02G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr2:348452..349939+ (Nannochloropsis oceanica)
ATGCCACAGCGCTTCCCCTTCTCCTCAAGCCCGATGGTGCTAATTCTCCT
GTGCACCGTGACAAGAGAAGCGTTCGGTTTTCAGCGTGGTATCATCGTTC
CCACACATATGCGCCGTGCCATGGGATCTTTTTCGACGTGGACCTCACCC
CTCTCCTCCCTCTCCTACTCCTCTTCATCCTCATCCTCGTCTTTTGCTTC
TTCATCGGTGACGGTGACGACAGCCAGATTAAGCTCTTTTCACCGCCACC
GTTCTCCGTTTATGCCGCCCACCAACACGGCACTCTTTGCATCCTCGACC
GCCTCATCAGGTGCTGGGAAGAAGAAAAAGGCAGCCTCGTTAAAATCAAA
GGCATCGGTCAAGAAGGTGATTGAGGACGAGGAGGACGACGAGGATGAGA
TGACCGAGGCAGAGTTGCTAAAAGTGATGCAAAGCGGTGAGGCTATGGAT
GCGGTGTGGCAGCGTATGATGAGTCAGATGGAAAGGACGGGGGCATTGGA
AGGTGAAGATGATAAGGAGGAGGATGACGACGACGAAGACGAGGACGAAG
ATGAGGATGGTGACAAGGAAGATAACGCTGAGGAGGACCTTTCGGGAAAT
GACGATAGCGATGACGACGATGACAACGATGACAGCAACGCCGTAAAGAT
CGATGCCATGGACCGCAAGCATGGCCTTCCCTCCTCCATGTCCTCCTCTT
CCTCCAGTCAAGACGAGGCAGAGAGCGACGACAACCTCGGCACGATTCAA
ATCCGGAATTCCCAAAGAAGCATCTCCTTGGACATAGATGTCTTGCACAA
TCATATACGTGGGATCATGGAAATCATCGGCAAAGATGACCATGATGTTT
CTCTTTGGTTGACCAACGACCGCAGTATCCGCGAGTACAATGACCGTTAC
AGGGGGAAACGCTCTGCGACGGATATTCTATCTTTCCCCTTCCACGAATA
TAAGTCTCCTGGCGTACCCACACCAGAATCAGTGGCATTGAATGGACAGA
TAAAAGATTTGGGGGATATGATGGTGTCGACTGGATACGTGCAACGGCAA
TGTGCCCGGGATGAGGCGGATTGGGCCGCGGAGGGGGAGAATCAGTGGTC
CGAGGAAAGGGGGGCCTCGGGGGCTATGGCGAGGGTATATGACGTCCAGG
GTCGGCTGCCCTTTTTGGTGATTCATGGACTTTTGCATTTGCTTGGGTAT
GATCACGAGACAGAGAAGGAGTATGAGGAGATGGTGAGGGAGGAGGAGAG
GGTGATAAGTGAGTTTGCGAGGAGGTTCCCGGAGGCGGCTCCACCGATGG
GAGAGCCAAAAAAATCGAAGGAGAGGAATATAGCTGCGGCAGCGGTGGGG
GAAGACGGAGGCAAGGCAAAAAAAAAGGCGTCAGGGGTAAGGGCGACGAA
GACAACAACAGCTCCTAAGAGGACTGCGAGTGCTGCTGCCAGCTCGAAGT
CCAAAGCCCCCCCAAAAAACGACTTTGACTCCAGATAA
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Synonyms
Publications