NO02G01020, NO02G01020 (gene) Nannochloropsis oceanica

Overview
NameNO02G01020
Unique NameNO02G01020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length588
Alignment locationchr2:316232..316819 -

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Properties
Property NameValue
DescriptionZinc finger, HIT-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:316232..316819 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007529Znf_HIT
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
BLAST of NO02G01020 vs. NCBI_GenBank
Match: EWM30568.1 (Zinc finger, HIT-type [Nannochloropsis gaditana])

HSP 1 Score: 179.5 bits (454), Expect = 1.000e-41
Identity = 99/190 (52.11%), Postives = 115/190 (60.53%), Query Frame = 0
Query:    1 MANRSGKKTVGTATANELAASGCEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSS--IARRHHRDVAQAAQGQKEEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDKLREALGHYPDLKGFVDRLLLEVGALKYENGQLI 189
            M NR+ KK + TA   + A  GCEVCC   +QGKYKCP C LRYCSV+C R HK  PCEKK+P  A+ A  G+KR R +  D FFPVPSS                                RKAL  SKWL+ ALEDSTLCSLLTDID + HR  +L E L  YP+LK FVDR+LLE+GALKYE G L+
Sbjct:    1 MKNRNDKKAM-TAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEP--ASTAAHGRKRARESTRDDFFPVPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLV 187          
BLAST of NO02G01020 vs. NCBI_GenBank
Match: XP_005855043.1 (hit-type zinc finger protein, partial [Nannochloropsis gaditana CCMP526] >EKU21319.1 hit-type zinc finger protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 175.3 bits (443), Expect = 1.900e-40
Identity = 98/190 (51.58%), Postives = 114/190 (60.00%), Query Frame = 0
Query:    1 MANRSGKKTVGTATANELAASGCEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSS--IARRHHRDVAQAAQGQKEEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDKLREALGHYPDLKGFVDRLLLEVGALKYENGQLI 189
            M NR+ KK + TA   + A  GCEVC    +QGKYKCP C LRYCSV+C R HK  PCEKK+P  A+ A  G+KR R +  D FFPVPSS                                RKAL  SKWL+ ALEDSTLCSLLTDID + HR  +L E L  YP+LK FVDR+LLE+GALKYE G L+
Sbjct:   11 MKNRNDKKAM-TAGNGKTAMPGCEVCFVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEP--ASTAAHGRKRARESTRDDFFPVPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLV 197          
BLAST of NO02G01020 vs. NCBI_GenBank
Match: GAX13645.1 (hypothetical protein FisN_14Lu344 [Fistulifera solaris])

HSP 1 Score: 76.3 bits (186), Expect = 1.200e-10
Identity = 57/176 (32.39%), Postives = 77/176 (43.75%), Query Frame = 0
Query:   23 CEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEKKDPRRAAI-AGAGKKRGRGAAADGFFPVPSSIARRHHRDVAQAAQGQKEEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDK---------------LREALGHYPDLKGFVDRLLLEVGALKY 183
            C V C +  Q KYKCP C   YC++ACCR HKE  C        A  A A  K  R A+       P  +  R  +  +Q     ++ EE W ++T +M+  L  + WLR  L D+ L  LL  I   P+ V K               L +     P  K F+D+L L  G L+Y
Sbjct:   47 CSV-CEQVPQPKYKCPKCRATYCNIACCRQHKENGCATTSAVTVATEATANSKYVREASK----LAPEKLVAR--KRSSQGNGNAEDREEGW-IITSEMKTRLQTNDWLRKELRDAGLRQLLVQIYEAPNVVSKKKRHGFNAQTEQEQVLEKIKEENPQFKSFLDKLSLVAGVLEY 214          
BLAST of NO02G01020 vs. NCBI_GenBank
Match: KHG28067.1 (Zinc finger HIT domain-containing 3 [Gossypium arboreum])

HSP 1 Score: 73.6 bits (179), Expect = 7.900e-10
Identity = 51/152 (33.55%), Postives = 79/152 (51.97%), Query Frame = 0
Query:   23 CEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEKKD--PRRAAIAGAGKKRGRGAAADGFFP------VPSSIARRHHRDVAQAAQ----GQK-EEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDKLREALG 162
            C+VC    +Q KYKCP+C + YCS+AC +THKETPCEK +    ++            A      P      VP S+  +       A++    G+K E E+   VL     +A++ S  +R AL+D  L  L++DID +P  +++L +A+G
Sbjct:    8 CQVC--NQTQSKYKCPSCLIPYCSLACFKTHKETPCEKSESVKEKSGTPSVNLGSNDNAITTSVKPESTNDAVPPSVETKSSEGRPTASREFLVGRKLEVEDPSEVLQIMQMQAIASSNDIREALKDEHLQKLISDIDSSPDALNELDKAMG 157          
BLAST of NO02G01020 vs. NCBI_GenBank
Match: XP_002179296.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49119.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.2 bits (178), Expect = 1.000e-9
Identity = 55/184 (29.89%), Postives = 87/184 (47.28%), Query Frame = 0
Query:   16 NELAASGCEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEK------KDPRRAAIAGAGKKRGRGAAADGFFPVPSSIARRHHRDVAQAAQGQKEE---EENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDK---------LREALGHYPDLKGFVDRLLLEVGALK 182
            + + A  C V C +    KYKCP C   YCS+ CCR HK+  CE       + P    +A  G         +   P+ S+ A       + A+Q +K+E   +E W +    M  A+  S WLR  L+DS L +L+T I  + + +D+         L++A   +P  + F+D+LL+  G L+
Sbjct:   85 SSIDAPSCSV-CRQVDHPKYKCPKCRATYCSILCCRRHKDGLCEATKATIIETPNSKTLATTGVTSKYLTNDNVPMPLLSATA-------SSASQRRKDEDDLDEGWKI-DSTMTHAMQSSLWLRQELQDSGLRALITRIVNSSNTLDRDLHTAQERALQQAKDDHPMFQRFIDKLLVLSGVLE 259          
BLAST of NO02G01020 vs. NCBI_GenBank
Match: XP_020241822.1 (zinc finger HIT domain-containing protein 3-like isoform X3 [Asparagus officinalis])

HSP 1 Score: 70.9 bits (172), Expect = 5.100e-9
Identity = 46/158 (29.11%), Postives = 77/158 (48.73%), Query Frame = 0
Query:   18 LAASGCEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSSIARRHHRDVAQAAQGQKEEEENWP--VLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDKLREALGHYPDLKGFVDRL 174
            + +  CEVC  +G+Q KYKCPTC + YCS+ C + HK+ PCEK                         PVP S     H D  +    ++ +E + P  VL+ +  +++ +S  +RS L D  L  ++  +D +    ++L +A+G    L+ F D++
Sbjct:   42 MGSKNCEVC--KGAQSKYKCPTCFIPYCSMVCFKKHKDIPCEK-------------------------PVPPSEEPPKHSDTLKDITDERLQEIDDPSCVLSKEQLESIVKSSEIRSFLADVNLQEMIQKVDSSQDPENELDKAMGDQTILQ-FTDKV 171          
BLAST of NO02G01020 vs. NCBI_GenBank
Match: XP_020241681.1 (zinc finger HIT domain-containing protein 3-like [Asparagus officinalis])

HSP 1 Score: 70.1 bits (170), Expect = 8.700e-9
Identity = 46/158 (29.11%), Postives = 76/158 (48.10%), Query Frame = 0
Query:   18 LAASGCEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSSIARRHHRDVAQAAQGQKEEEENWP--VLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDKLREALGHYPDLKGFVDRL 174
            + +  CEVC  +G Q KYKCPTC + YCS+ C + HK+ PCEK                         PVP S     H D  +    ++ +E + P  VL+ +  +++ +S  +RS L D  L  ++  +D +    ++L +A+G    L+ F D++
Sbjct:    1 MGSKNCEVC--KGEQSKYKCPTCFIPYCSMVCFKKHKDIPCEK-------------------------PVPPSEEPPKHSDTLKDITDERLQEIDDPSCVLSKEQLESIVKSSEIRSFLADVNLQKMIQKVDSSRDPENELDKAMGDQTFLQ-FTDKV 130          
BLAST of NO02G01020 vs. NCBI_GenBank
Match: ONK61823.1 (uncharacterized protein A4U43_C08F33960 [Asparagus officinalis])

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8
Identity = 46/165 (27.88%), Postives = 79/165 (47.88%), Query Frame = 0
Query:   18 LAASGCEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSSIARRHHRDVAQAAQGQKEEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDKLREALGHYPDLKGFVDRLLLEVGALKY 183
            + +  CEVC  +G+Q KYKCPTC + YCS+ C + HK+ PCEK  P                      P   S   +   DV   A+  +E ++   VL+ +  +++ +S  +RS L D  L  ++  +D +    ++L +A+G    L+ F D++   +   +Y
Sbjct:    1 MGSKNCEVC--KGAQSKYKCPTCFIPYCSMVCFKKHKDIPCEKPVPPSEE------------------PPKHSDTLKDITDVIVCAERLQEIDDPSCVLSKEQLESIVKSSEIRSFLADVNLQEMIQKVDSSQDPENELDKAMGDQTILQ-FTDKVRSVINPEEY 144          
BLAST of NO02G01020 vs. NCBI_GenBank
Match: XP_020529173.1 (zinc finger HIT domain-containing protein 3 isoform X1 [Amborella trichopoda])

HSP 1 Score: 68.9 bits (167), Expect = 1.900e-8
Identity = 43/151 (28.48%), Postives = 75/151 (49.67%), Query Frame = 0
Query:   23 CEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSSIARRHHRDVAQAAQGQKEEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDKLREALGHYPDLKGFVDRL 174
            C VC    +Q KYKCPTC + YCS+AC + H+E PC K D                        +P      +      +A+  + +EE+W VL  D  ++++ S  +R+ L++  LC ++++I+ + +  D+L +AL   P  + F D++
Sbjct:    6 CGVCVE--AQSKYKCPTCFMPYCSLACFKNHREVPCTKPD------------------------LPEQKPENNAETHLLSARSIRVDEESW-VLQKDQFESIASSYEIRNTLKNDELCRIISNINSSTNAEDELDKAL-RDPAFREFSDKI 128          
BLAST of NO02G01020 vs. NCBI_GenBank
Match: XP_020241823.1 (zinc finger HIT domain-containing protein 3-like isoform X4 [Asparagus officinalis])

HSP 1 Score: 68.6 bits (166), Expect = 2.500e-8
Identity = 45/156 (28.85%), Postives = 76/156 (48.72%), Query Frame = 0
Query:   18 LAASGCEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSSIARRHHRDVAQAAQGQKEEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDKLREALGHYPDLKGFVDRL 174
            + +  CEVC  +G+Q KYKCPTC + YCS+ C + HK+ PCEK  P                      P   S   +   DV   A+  +E ++   VL+ +  +++ +S  +RS L D  L  ++  +D +    ++L +A+G    L+ F D++
Sbjct:    1 MGSKNCEVC--KGAQSKYKCPTCFIPYCSMVCFKKHKDIPCEKPVPPSEE------------------PPKHSDTLKDITDVIVCAERLQEIDDPSCVLSKEQLESIVKSSEIRSFLADVNLQEMIQKVDSSQDPENELDKAMGDQTILQ-FTDKV 135          
The following BLAST results are available for this feature:
BLAST of NO02G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30568.11.000e-4152.11Zinc finger, HIT-type [Nannochloropsis gaditana][more]
XP_005855043.11.900e-4051.58hit-type zinc finger protein, partial [Nannochloro... [more]
GAX13645.11.200e-1032.39hypothetical protein FisN_14Lu344 [Fistulifera sol... [more]
KHG28067.17.900e-1033.55Zinc finger HIT domain-containing 3 [Gossypium arb... [more]
XP_002179296.11.000e-929.89predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_020241822.15.100e-929.11zinc finger HIT domain-containing protein 3-like i... [more]
XP_020241681.18.700e-929.11zinc finger HIT domain-containing protein 3-like [... [more]
ONK61823.11.100e-827.88uncharacterized protein A4U43_C08F33960 [Asparagus... [more]
XP_020529173.11.900e-828.48zinc finger HIT domain-containing protein 3 isofor... [more]
XP_020241823.12.500e-828.85zinc finger HIT domain-containing protein 3-like i... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006708NSK006708Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01020.1NO02G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573767gene_679Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100033g44gene115Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01020.1NO02G01020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01020 ID=NO02G01020|Name=NO02G01020|organism=Nannochloropsis oceanica|type=gene|length=588bp
ATGGCAAATCGCAGCGGCAAGAAAACCGTGGGGACAGCAACGGCAAATGA
ATTGGCAGCATCTGGATGCGAGGTTTGCTGTGCGGAAGGAAGCCAAGGCA
AATACAAGTGCCCCACGTGCCATCTCCGGTATTGCAGCGTGGCTTGCTGT
CGAACGCACAAGGAGACTCCGTGCGAGAAAAAAGACCCAAGAAGAGCAGC
AATTGCAGGAGCCGGCAAGAAGCGGGGCCGTGGTGCGGCAGCAGACGGTT
TCTTCCCCGTTCCTTCCTCCATTGCCCGGCGACACCATCGTGACGTTGCC
CAGGCTGCTCAAGGACAGAAGGAGGAAGAGGAGAATTGGCCGGTGCTGAC
CGACGACATGCGTAAGGCCCTGTCGGAAAGCAAGTGGCTACGAAGCGCCT
TAGAAGATTCAACGCTTTGTAGTTTGTTGACGGACATAGATGGGAACCCG
CACCGGGTAGACAAGTTGAGGGAGGCCTTGGGTCATTACCCCGACTTAAA
GGGGTTTGTGGATCGGTTGTTGTTGGAGGTGGGAGCTCTCAAATATGAGA
ACGGGCAGTTGATATTTGCGGGGGATGGGGGTCCGTGA
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protein sequence of NO02G01020.1

>NO02G01020.1-protein ID=NO02G01020.1-protein|Name=NO02G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MANRSGKKTVGTATANELAASGCEVCCAEGSQGKYKCPTCHLRYCSVACC
RTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSSIARRHHRDVA
QAAQGQKEEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNP
HRVDKLREALGHYPDLKGFVDRLLLEVGALKYENGQLIFAGDGGP*
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Synonyms
Publications