NO02G01020.1, NO02G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01020.1
Unique NameNO02G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length588
Alignment locationchr2:316232..316819 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:316232..316819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01020.1 vs.
Match: EWM30568.1 (Zinc finger, HIT-type [Nannochloropsis gaditana])

HSP 1 Score: 228.4 bits (581), Expect = 1.900e-56
Identity = 117/190 (61.58%), Postives = 139/190 (73.16%), Query Frame = 0 
Query:    1 MANRSGKKTVGTATANELAASGCEVCCAEGSQGKYKCPTCHLRYCSVACCRTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSSIARRHHRDVA--QAAQGQKEEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNPHRVDKLREALGHYPDLKGFVDRLLLEVGALKYENGQLI 189
            M NR+ KK + TA   + A  GCEVCC   +QGKYKCP C LRYCSV+C R HK  PCEKK+P  A+ A  G+KR R +  D FFPVPSSIAR+HH D+A  QA   Q+EEE++  +LTDDMRKAL  SKWL+ ALEDSTLCSLLTDID + HR  +L E L  YP+LK FVDR+LLE+GALKYE G L+
Sbjct:    1 MKNRNDKKAM-TAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEP--ASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLV 187
The following BLAST results are available for this feature:
BLAST of NO02G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30568.11.900e-5661.58Zinc finger, HIT-type [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01020NO02G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01020.1NO02G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01020.1.cds1NO02G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01020.1 ID=NO02G01020.1|Name=NO02G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=588bp
ATGGCAAATCGCAGCGGCAAGAAAACCGTGGGGACAGCAACGGCAAATGA
ATTGGCAGCATCTGGATGCGAGGTTTGCTGTGCGGAAGGAAGCCAAGGCA
AATACAAGTGCCCCACGTGCCATCTCCGGTATTGCAGCGTGGCTTGCTGT
CGAACGCACAAGGAGACTCCGTGCGAGAAAAAAGACCCAAGAAGAGCAGC
AATTGCAGGAGCCGGCAAGAAGCGGGGCCGTGGTGCGGCAGCAGACGGTT
TCTTCCCCGTTCCTTCCTCCATTGCCCGGCGACACCATCGTGACGTTGCC
CAGGCTGCTCAAGGACAGAAGGAGGAAGAGGAGAATTGGCCGGTGCTGAC
CGACGACATGCGTAAGGCCCTGTCGGAAAGCAAGTGGCTACGAAGCGCCT
TAGAAGATTCAACGCTTTGTAGTTTGTTGACGGACATAGATGGGAACCCG
CACCGGGTAGACAAGTTGAGGGAGGCCTTGGGTCATTACCCCGACTTAAA
GGGGTTTGTGGATCGGTTGTTGTTGGAGGTGGGAGCTCTCAAATATGAGA
ACGGGCAGTTGATATTTGCGGGGGATGGGGGTCCGTGA
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protein sequence of NO02G01020.1

>NO02G01020.1-protein ID=NO02G01020.1-protein|Name=NO02G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MANRSGKKTVGTATANELAASGCEVCCAEGSQGKYKCPTCHLRYCSVACC
RTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSSIARRHHRDVA
QAAQGQKEEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNP
HRVDKLREALGHYPDLKGFVDRLLLEVGALKYENGQLIFAGDGGP*
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mRNA from alignment at chr2:316232..316819-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01020.1 ID=NO02G01020.1|Name=NO02G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=588bp|location=Sequence derived from alignment at chr2:316232..316819- (Nannochloropsis oceanica)
ATGGCAAATCGCAGCGGCAAGAAAACCGTGGGGACAGCAACGGCAAATGA
ATTGGCAGCATCTGGATGCGAGGTTTGCTGTGCGGAAGGAAGCCAAGGCA
AATACAAGTGCCCCACGTGCCATCTCCGGTATTGCAGCGTGGCTTGCTGT
CGAACGCACAAGGAGACTCCGTGCGAGAAAAAAGACCCAAGAAGAGCAGC
AATTGCAGGAGCCGGCAAGAAGCGGGGCCGTGGTGCGGCAGCAGACGGTT
TCTTCCCCGTTCCTTCCTCCATTGCCCGGCGACACCATCGTGACGTTGCC
CAGGCTGCTCAAGGACAGAAGGAGGAAGAGGAGAATTGGCCGGTGCTGAC
CGACGACATGCGTAAGGCCCTGTCGGAAAGCAAGTGGCTACGAAGCGCCT
TAGAAGATTCAACGCTTTGTAGTTTGTTGACGGACATAGATGGGAACCCG
CACCGGGTAGACAAGTTGAGGGAGGCCTTGGGTCATTACCCCGACTTAAA
GGGGTTTGTGGATCGGTTGTTGTTGGAGGTGGGAGCTCTCAAATATGAGA
ACGGGCAGTTGATATTTGCGGGGGATGGGGGTCCGTGA
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Coding sequence (CDS) from alignment at chr2:316232..316819-

>NO02G01020.1 ID=NO02G01020.1|Name=NO02G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at chr2:316232..316819- (Nannochloropsis oceanica)
ATGGCAAATCGCAGCGGCAAGAAAACCGTGGGGACAGCAACGGCAAATGA
ATTGGCAGCATCTGGATGCGAGGTTTGCTGTGCGGAAGGAAGCCAAGGCA
AATACAAGTGCCCCACGTGCCATCTCCGGTATTGCAGCGTGGCTTGCTGT
CGAACGCACAAGGAGACTCCGTGCGAGAAAAAAGACCCAAGAAGAGCAGC
AATTGCAGGAGCCGGCAAGAAGCGGGGCCGTGGTGCGGCAGCAGACGGTT
TCTTCCCCGTTCCTTCCTCCATTGCCCGGCGACACCATCGTGACGTTGCC
CAGGCTGCTCAAGGACAGAAGGAGGAAGAGGAGAATTGGCCGGTGCTGAC
CGACGACATGCGTAAGGCCCTGTCGGAAAGCAAGTGGCTACGAAGCGCCT
TAGAAGATTCAACGCTTTGTAGTTTGTTGACGGACATAGATGGGAACCCG
CACCGGGTAGACAAGTTGAGGGAGGCCTTGGGTCATTACCCCGACTTAAA
GGGGTTTGTGGATCGGTTGTTGTTGGAGGTGGGAGCTCTCAAATATGAGA
ACGGGCAGTTGATATTTGCGGGGGATGGGGGTCCGTGA
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Synonyms
Publications