NO02G00870, NO02G00870 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G00870
Unique Name	NO02G00870
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	5058
Alignment location	chr2:279377..284434 -

Link to JBrowse

Properties


Property Name	Value
Description	Helicase-associated domain protein

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:279377..284434 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding
GO:0004386	helicase activity
GO:0016787	hydrolase activity
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR011709	DUF1605
IPR011545	DEAD/DEAH_box_helicase_dom
IPR007502	Helicase-assoc_dom
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C

Homology

[Close]

BLAST of NO02G00870 vs. NCBI_GenBank
Match: EWM30580.1 (Helicase-associated domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1316.2 bits (3405), Expect = 0.000e+0
Identity = 663/764 (86.78%), Postives = 693/764 (90.71%), Query Frame = 0

Query:    1 MSKRPFDS----GVG--MGGARKQRIDLSDLKPAGGGNGGGIAGQGTVNPYTNRQYSSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQFLVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFEDCSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGLLKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNYTSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMVLSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPLVSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDWLLEIAPHYYDLANFPKGETKNELEACAKRLYQL 759
            MSKR FDS    GVG  MG  RKQRIDL+DL+P G GN GGIA  G +NPYTNR YSS+Y DIL+KRRGLPVYEFLD+LL KVKKNQV+VVEGETGSGKTTQIPQFLVDAGYTRDG+CVACTQPRRVAAMSIAKRVSEEMDVT+GEEVGYTIRFEDCS  KT+LKFLTDGMLLREAMFDP L+KYKVIVLDEAHERTLATDVLMGLLK+VLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRT LQIHLCEEPGD+LVFLTGEEEIEDACRKIRDES NYTSTHGELAV+PLYSSLPP QQQKIFS+APGP+ PG PPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPIS+ASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGV+DLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGH+MSELPLDPQAAKMVLS+PD+ CSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQ GG+KDWCW+NFINVRSMGSAENVR+QLERMLTRMEVPL+SPDFN+PDYYTRIKKALTAGGYMQ+AHLQ+TGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRT+TAV                                           EC+WLLEIAPHYYDLANFPKGETKNELEACAKRLYQL
Sbjct:    1 MSKRGFDSGPMGGVGGEMGQTRKQRIDLADLRPGGSGN-GGIAPVGGINPYTNRPYSSKYHDILAKRRGLPVYEFLDDLLAKVKKNQVVVVEGETGSGKTTQIPQFLVDAGYTRDGYCVACTQPRRVAAMSIAKRVSEEMDVTMGEEVGYTIRFEDCSGPKTVLKFLTDGMLLREAMFDPMLKKYKVIVLDEAHERTLATDVLMGLLKDVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTALQIHLCEEPGDILVFLTGEEEIEDACRKIRDESANYTSTHGELAVYPLYSSLPPTQQQKIFSEAPGPQAPGAPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVEDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHRMSELPLDPQAAKMVLSAPDFGCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQHGGSKDWCWDNFINVRSMGSAENVRTQLERMLTRMEVPLLSPDFNAPDYYTRIKKALTAGGYMQVAHLQKTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTVTAV-------------------------------------------ECEWLLEIAPHYYDLANFPKGETKNELEACAKRLYQL 720

[Close]

BLAST of NO02G00870 vs. NCBI_GenBank
Match: CBJ26788.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 1017.3 bits (2629), Expect = 2.500e-293
Identity = 507/716 (70.81%), Postives = 587/716 (81.98%), Query Frame = 0

Query:   42 VNPYTNRQYSSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQFLVDAGYTRDGH-CVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFEDCSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGLLKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRD--ESLNYTSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMVLSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPLVSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDWLLEIAPHYYDLANFPKGETKNELEACAKR 755
            +NP+T   YS +Y+DIL KR+ LPV++FLD+L+ KVK NQ +VVEGETGSGKTTQIPQFLV+AGY   G  CVACTQPRRVAAMSIA RVS+EMDV LG+ VGY+IRFE  +  +TIL F+TDGMLLREAM DP L KYK IVLDEAHERTLATDVLMGL+KEVL+ RPDM++VVMSATLDAEKFQKYF +APLL+VPGR F VE+FYTP PERDYV+AA+RT +QIH CE+PGDVL+FLTGE EIEDACR IR   E     +  GELAV+PLYSSLPP  QQKIF +APGPK PGGP GRKVVVSTN+AETSLTIDGIVYVVDPGFSKQK+YNPR+RVESLLVSPIS+ASAQQRSGRAGRTRPGKCFRLYTE+SF+++L EQTYPEILRS+MSN VLTLLKLGV+DLVHFDFMDPPAPETL RALE LNYLGA+ DEG +T +G+KMSELPLDPQ AK++L+SPDY CSNE+L+IV+MLSVPQVFMRPKEA K ADEAKA+FAH+DGDHLTLLNAYHAYKQ GG+KDWC+ NFIN RSM SAENVR QL R++ R+E+ +VS +F + DYYT IKKALTAG +MQ+AHL+R+G YLTVKD+Q+VSIHPSSVLD KP W ++ +FVLTSKNYIRT+T V                                           + DWL+EIAPHY+DL NFP+ E K++LEA  +R
Sbjct:   30 INPFTGAPYSRKYYDILEKRKKLPVHQFLDDLMDKVKNNQTVVVEGETGSGKTTQIPQFLVEAGYGAIGEGCVACTQPRRVAAMSIANRVSDEMDVNLGDIVGYSIRFEIKNGPRTILNFMTDGMLLREAMNDPFLAKYKCIVLDEAHERTLATDVLMGLIKEVLKNRPDMRVVVMSATLDAEKFQKYFDNAPLLKVPGRTFPVEIFYTPTPERDYVEAAVRTVVQIHKCEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQVFMRPKEAQKAADEAKAEFAHIDGDHLTLLNAYHAYKQNGGSKDWCFSNFINSRSMVSAENVREQLGRLMGRLELRMVSTEFTARDYYTNIKKALTAGMFMQVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGV-------------------------------------------QADWLVEIAPHYFDLENFPECEAKHDLEAVYRR 702

[Close]

BLAST of NO02G00870 vs. NCBI_GenBank
Match: PRW60688.1 (putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Chlorella sorokiniana])

HSP 1 Score: 954.1 bits (2465), Expect = 2.600e-274
Identity = 475/754 (63.00%), Postives = 577/754 (76.53%), Query Frame = 0

Query:   16 RKQRIDLSDLKPAGGG----NGGGI---------AGQGTVNPYTNRQYSSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQFLVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFEDCSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGLLKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNYTSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMVLSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPLVSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDWLLEIAPHYYDLANFPKGETKNELEACAKRLY 757
            RK+++++ +  P        NG GI         A  G+VNPYT R YS+RY  IL+ R+GLPV++   + +  V  +Q I++ GETGSGKTTQI QF+ +AGY   G  V CTQPRRVAAMS+A+RV+EEMDV+LGEEVGY+IRFE+CS  KTI+KF TDGMLLREAM DP LEKY VI+LDEAHERTLATDVL GLLKEVL++RPD+K+VVMSATL+AEKFQ YF DAPL++VPGR+  VE+FYT EPERDY++AAIRT +QIH CE PGD+LVFLTGEEEIEDACRKI  E  N     G + V+PLYS+LPP QQQ+IF  AP    PGGP GRK++VSTNIAETSLTIDGIVYV+DPGF+KQK+YNPR+RVESLLVSPIS+ASA QR+GRAGRT+PGKCFRLYTE SF KDLQEQTYPEILRS + +VVL L KLG+DDLVHFDFMDPPAPETL RALE LNYLGA+ DEG +T++G  M+E PLDPQ +KM++++P++ CSNEIL+I +MLSVP VF+RP+EA K ADE+KA+FAH+DGDHLTLLN YHAYKQ G + +WC+ NF+N RS+ SA+NVRSQL R+ TR++V L S DFNS DYYT I+KAL AG +MQ+AHL+RTG YLT KD+Q+V +HPS+ LD KP W LY +FVLTSKNYIRT+T + G                                           +WL+++APHY+D+ANFP GE +  LE    RLY
Sbjct:    3 RKRKLEVYEAPPVPAAPAQPNGQGIGWQQTAAPPAADGSVNPYTGRPYSTRYHQILATRQGLPVWQAKADFINMVNSSQTIILVGETGSGKTTQIAQFIAEAGYCTGGKKVVCTQPRRVAAMSVARRVAEEMDVSLGEEVGYSIRFEECSGPKTIIKFATDGMLLREAMTDPLLEKYSVIILDEAHERTLATDVLFGLLKEVLKQRPDLKLVVMSATLEAEKFQGYFLDAPLIKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHSCEPPGDILVFLTGEEEIEDACRKIVKEVNNLGDGVGPVKVYPLYSTLPPQQQQRIFDPAPPAARPGGPAGRKIIVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISRASAHQRAGRAGRTKPGKCFRLYTEASFYKDLQEQTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDEGNMTEVGSVMAEFPLDPQLSKMIVAAPEFKCSNEILSIAAMLSVPNVFVRPREAMKAADESKARFAHIDGDHLTLLNVYHAYKQHGEDNEWCFANFLNHRSLKSADNVRSQLVRICTRLQVKLCSTDFNSRDYYTNIRKALVAGYFMQVAHLERTGHYLTAKDNQVVYLHPSTCLDHKPEWALYQEFVLTSKNYIRTVTDIKG-------------------------------------------EWLVDLAPHYFDMANFPAGEARRALE----RLY 709

[Close]

BLAST of NO02G00870 vs. NCBI_GenBank
Match: OAE35059.1 (hypothetical protein AXG93_3253s1250 [Marchantia polymorpha subsp. ruderalis] >PTQ50494.1 hypothetical protein MARPO_0001s0447 [Marchantia polymorpha])

HSP 1 Score: 953.7 bits (2464), Expect = 3.300e-274
Identity = 473/748 (63.24%), Postives = 571/748 (76.34%), Query Frame = 0

Query:   12 MGGARKQRIDLSDLKPAGGGNGGGIAGQGT--VNPYTNRQYSSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQFLVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFEDCSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGLLKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNYTSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMVLSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPLVSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDWLLEIAPHYYDLANFPKGETKNELEACAKRLYQ 758
            MG  RK+++ L D+        G     G   +NPYTNR YS RY++IL KRR LPV++   E L  + K+Q +++ GETGSGKTTQIPQF+V+AGYT +   +ACTQPRRVAAMS+++RV++EMDVT+GEEVGY+IRFEDCS  KT LK+LTDGML REAM DP LE+YKVI+LDEAHERTLATDVL GLLKEVL+ RPD+K+VVMSATL+AEKFQ YF  APL++VPGR+  VE+FYT +PERDY++AAIRT +QIH+CE PGD+LVFLTGEEEIEDACRKI  E  N     G + V PLYS+LPP  QQKIF  AP P   GGPPGRK+VVSTNIAETSLTIDGIVYV+DPGF+KQK+YNPR+RVESLLVSPISKASA QR+GRAGRT+PGKCFRLYTEKSFQ DL  QTYPEILRS ++NVVLTL KLG+DDLVHFDFMDPPAPETL RALE LNYLGA+ D+G +T MG  MSE PLDPQ +KM++ SP +NCSNEIL+I +MLSVP  F+RP+EA K ADEAKA+FAHVDGDHLTLLN YHAYKQ   +  WC++NF+N+R++ SA+NVR QL R++ R  + + S +F SP YY  I+KA+ AG +MQ+AHL+RTG YLTVKD+Q+V +HPS+ LD KP WV+Y +FVLTS+N+IR +T V G                                           +WL++IAPHYYDL NFP+ E +  LE    RLYQ
Sbjct:    1 MGSERKRKLSLFDVVEDTSSLAGKTKANGVPLLNPYTNRPYSQRYYEILEKRRTLPVWQQKQEFLDILAKHQTMILVGETGSGKTTQIPQFVVEAGYTANRKQIACTQPRRVAAMSVSRRVADEMDVTIGEEVGYSIRFEDCSGAKTCLKYLTDGMLQREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQAYFNGAPLMKVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHICENPGDILVFLTGEEEIEDACRKITREVQNLGDQVGPVKVVPLYSTLPPSMQQKIFEAAPAPAKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFQNDLHPQTYPEILRSNLANVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDGNLTSMGELMSEFPLDPQMSKMLVISPKFNCSNEILSITAMLSVPNCFLRPREAQKAADEAKARFAHVDGDHLTLLNVYHAYKQNSEDPTWCYDNFVNIRALKSADNVRGQLVRIMNRHNLKMCSTEFTSPAYYPNIRKAMLAGYFMQVAHLERTGHYLTVKDNQMVHLHPSTCLDHKPEWVIYNEFVLTSRNFIRIVTDVKG-------------------------------------------EWLIDIAPHYYDLTNFPQCEARRVLE----RLYQ 701

[Close]

BLAST of NO02G00870 vs. NCBI_GenBank
Match: XP_024362762.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1 [Physcomitrella patens] >PNR29300.1 hypothetical protein PHYPA_027992 [Physcomitrella patens])

HSP 1 Score: 953.4 bits (2463), Expect = 4.400e-274
Identity = 475/752 (63.16%), Postives = 582/752 (77.39%), Query Frame = 0

Query:   12 MGGARKQRIDLSDL--KPAGG-----GNGGGIAGQGTVNPYTNRQYSSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQFLVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFEDCSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGLLKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNYTSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMVLSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPLVSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDWLLEIAPHYYDLANFPKGETKNELEACAKRLY 757
            M G RK+++ L D+  + A G     GNGG   G   +NP+T R YS++YF+IL KRR LPV++   E L+ + KNQ +++ GETGSGKTTQIPQF+V+AGYT +   VACTQPRRVAAMS+++RV++EMDVT+G+EVGY+IRFEDCS  KT LK+LTDGMLLREAM DP LE+Y+VI+LDEAHERTLATDVL GLLKEVL+ RPD+K+VVMSATL+AEKFQ YF  APL++VPGR+  VE+FYT EPERDY++AAIRT +QIH+CE PGD+LVFLTGEEEIEDAC+KI  E  N     G +   PLYS+LPP  QQKIF  AP P   GGPPGRK+VVSTNIAETSLTIDGIVYV+DPGF+KQK+YNPR+RVESLLVSPISKASA QR+GRAGRT+PGKCFRLYTEKSFQ DLQ QTYPEILRS ++NVVLTL KLG+DDLVHFDFMDPPAPETL RALE LNYL A+ D+G +T++G  MSE PLDPQ +KM++ SP++NCSNEIL++ +MLSVP  FMRP++A K ADEAKA+F+H+DGDHLTLLN YHA+KQ G +  WC+ENFIN R++ SA+NVR+QL R++ R  + + S DFNS DYY  I+KA+ AG +MQ+AHL+RTG YLTVKD+Q+V +HPSS LD KP WVLY +FVLT++N+IR +T V G                                           +WL+++APHYYDL+NFP+ E +  LE    RLY
Sbjct:    1 MAGERKRKLSLFDVVDEAANGSEKSKGNGG---GGPVLNPHTGRPYSAKYFEILEKRRTLPVWQQKAEFLSILAKNQTMILVGETGSGKTTQIPQFVVEAGYTTNRKQVACTQPRRVAAMSVSRRVADEMDVTIGDEVGYSIRFEDCSGPKTTLKYLTDGMLLREAMTDPLLERYRVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQAYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHICEPPGDILVFLTGEEEIEDACKKIGREVQNLGDQVGPVKAVPLYSTLPPAMQQKIFDAAPPPAKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFQNDLQPQTYPEILRSNLANVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTKLGELMSEFPLDPQMSKMLVVSPEFNCSNEILSVTAMLSVPNCFMRPRDAQKAADEAKARFSHIDGDHLTLLNVYHAFKQNGEDATWCFENFINARALKSADNVRTQLVRIMNRYNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQMVHLHPSSCLDHKPEWVLYNEFVLTTRNFIRIVTDVRG-------------------------------------------EWLIDVAPHYYDLSNFPQCEGRRVLE----RLY 702

[Close]

BLAST of NO02G00870 vs. NCBI_GenBank
Match: XP_005852221.1 (hypothetical protein CHLNCDRAFT_33628 [Chlorella variabilis] >EFN60119.1 hypothetical protein CHLNCDRAFT_33628 [Chlorella variabilis])

HSP 1 Score: 953.4 bits (2463), Expect = 4.400e-274
Identity = 472/750 (62.93%), Postives = 573/750 (76.40%), Query Frame = 0

Query:   16 RKQRIDLSDLKPAGGGNGGGI-------AG--QGTVNPYTNRQYSSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQFLVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFEDCSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGLLKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNYTSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMVLSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPLVSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDWLLEIAPHYYDLANFPKGETKNELEACAKRLY 757
            RK+++++ D  P   G GG         AG     +NPYT R YS+RY  ILS R+GLPV++   + +  V  +Q I++ GETGSGKTTQI QF+ +AGY   G  V CTQPRRVAAMS+A+RV+EEMDV LGEEVGY+IRFE+CS  +TI+KF TDGMLLREAM DP LEKY VI+LDEAHERTLATDVL GLLKEVL++R D+K+VVMSATL+AEKFQ YF DAPL++VPGR+  VE+FYT EPERDY++AAIRT +QIH CE PGD+LVFLTGEEEIEDACRKI  E  N   + G + V+PLYS+LPP QQQ+IF  AP    PGGP GRK++VSTNIAETSLTIDGIV+V+DPGF+KQK+YNPR+RVESLLVSPIS+ASA QR+GRAGRT+PGKCFRLYTE SF KDLQEQTYPEILRS + +VVL L KLG+DDLVHFDFMDPPAPETL RALE LNYLGA+ DEG +TQ+G  M+E PLDPQ +KM++++P++ CSNEIL+I +MLS+P VF+RP+EA K ADEAKA+FAH+DGDHLTLLN YHAYKQ G + +WC+ NF+N RS+ SA+NVR QL R+ TR++V LVS DFNS DYYT I+KAL AG +MQ+AHL+RTG YLT KD+Q+V +HPS+ LD KP W LY +FVLTSKNYIRT+T + G                                           +WL+++APHY+D+ NFP GE +  LE    RLY
Sbjct:    3 RKRKLEVYDGVPQANGGGGAYQNTAAPPAGDPHANINPYTGRSYSARYHQILSTRQGLPVWQAKADFINMVNSSQTIILVGETGSGKTTQIAQFIAEAGYCAGGKKVVCTQPRRVAAMSVARRVAEEMDVALGEEVGYSIRFEECSGPRTIIKFATDGMLLREAMTDPLLEKYSVIILDEAHERTLATDVLFGLLKEVLKQRQDLKLVVMSATLEAEKFQGYFLDAPLIKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHSCEGPGDILVFLTGEEEIEDACRKITKEVNNLGDSVGPIKVYPLYSTLPPQQQQRIFDPAPPAARPGGPAGRKIIVSTNIAETSLTIDGIVFVIDPGFAKQKVYNPRIRVESLLVSPISRASAHQRAGRAGRTKPGKCFRLYTEASFYKDLQEQTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALEMLNYLGALDDEGNLTQVGTVMAEFPLDPQLSKMIVAAPEFKCSNEILSIAAMLSIPNVFVRPREAMKAADEAKARFAHIDGDHLTLLNVYHAYKQHGDDSEWCYANFLNNRSLKSADNVRGQLVRICTRLQVQLVSTDFNSRDYYTNIRKALVAGYFMQVAHLERTGHYLTAKDNQVVYLHPSTCLDHKPEWALYQEFVLTSKNYIRTVTDIKG-------------------------------------------EWLVDLAPHYFDMTNFPAGEARRALE----RLY 705

[Close]

BLAST of NO02G00870 vs. NCBI_GenBank
Match: PAN49960.1 (hypothetical protein PAHAL_D02463 [Panicum hallii] >PUZ41361.1 hypothetical protein GQ55_9G498600 [Panicum hallii var. hallii])

HSP 1 Score: 953.0 bits (2462), Expect = 5.700e-274
Identity = 477/757 (63.01%), Postives = 573/757 (75.69%), Query Frame = 0

Query:   12 MGGARKQRIDLSDL--------KPAGGGNGGGIAGQG----TVNPYTNRQYSSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQFLVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFEDCSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGLLKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNYTSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMVLSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPLVSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDWLLEIAPHYYDLANFPKGETKNELEACAKRLY 757
            MG  RK+++ L D+        K   G   G  A  G    TVN +  R YS+RYF+IL KRR LPV++  DE L  ++ NQ +++ GETGSGKTTQIPQF+++     +   VACTQPRRVAAMS+++RV+EEMDVT+GEEVGY+IRFEDCSS KT+LK+LTDGMLLREAM DP LEKYKVIVLDEAHERTLATDVL GLLKEVL+ RPD+K+VVMSATL+AEKFQ YF  APL++VPGR+  VE+FYT EPERDY++AAIRT +QIH+CE  GD+LVFLTGEEEIEDACRKI  E  N     G + V PLYS+LPP  QQKIF  AP P   GGPPGRK+VVSTNIAETSLTIDGIVYV+DPGFSKQK+YNPR+RVESLLVSPISKASA QR+GRAGRT+PGKCFRLYTEKSF +DLQ QTYPEILRS ++N VLTL KLG+DDLVHFDFMDPPAPETL RALE LNYLGA+ D+G +TQ+G  MSE PLDPQ +KM++ SP YNCSNEIL+I +MLSVP  F+RP+EA K ADEAKA+F H+DGDHLTLLN YHAYKQ   +  WC+ENFIN R++ SA+NVR QL R++TR  + + S DFN+ +YY  I+KAL AG +MQ+AHL+RTG YLTVKD+Q+V +HPS+ +D KP WV+Y ++VLT++N+IRT+T + G                                           +WL++IAPHYYDL+NFP  E K  LE    RLY
Sbjct:    1 MGTERKRKVSLFDVVDETSVSAKLGRGATNGAAAAAGGANPTVNRWNGRPYSARYFEILEKRRTLPVWQQKDEFLRALRDNQTLILVGETGSGKTTQIPQFVLETEGLGNRSMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSSAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTQLGEMMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLSVPNCFLRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINARALKSADNVRQQLVRIMTRFNLKMCSTDFNNREYYVNIRKALLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIYNEYVLTTRNFIRTVTDIRG-------------------------------------------EWLIDIAPHYYDLSNFPSCEAKRVLE----RLY 710

[Close]

BLAST of NO02G00870 vs. NCBI_GenBank
Match: XP_008672152.1 (putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1 [Zea mays] >ACN28016.1 unknown [Zea mays] >ONL97407.1 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Zea mays] >ONL97414.1 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Zea mays])

HSP 1 Score: 949.9 bits (2454), Expect = 4.800e-273
Identity = 472/756 (62.43%), Postives = 572/756 (75.66%), Query Frame = 0

Query:   12 MGGARKQRIDLSDL--------KPAGGGNGGGIAGQG---TVNPYTNRQYSSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQFLVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFEDCSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGLLKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNYTSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMVLSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPLVSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDWLLEIAPHYYDLANFPKGETKNELEACAKRLY 757
            MG  RK+++ L D+        K     NG      G   +VN +  R Y++RYFDIL KRR LPV++  +E L  ++ NQ +++ GETGSGKTTQIPQF+++     +   VACTQPRRVAAMS+++RV+EEMDVT+GEEVGY+IRFEDCSS KT+LK+LTDGMLLREAM DP LEKYKVIVLDEAHERTLATDVL GLLKEVL+ RPD+K+VVMSATL+AEKFQ YF  APL++VPGR+  VE+FYT EPERDY++AAIRT +QIH+CE  GD+LVFLTGEEEIEDACRKI  E+ N     G + V PLYS+LPP  QQKIF  AP P   GGPPGRK+VVSTNIAETSLTIDGIVYV+DPGFSKQK+YNPR+RVESLLVSPISKASA QR+GRAGRT+PGKCFRLYTEKSF +DLQ QTYPEILRS ++N VLTL KLG+DDLVHFDFMDPPAPETL RALE LNYLGA+ DEG +TQ+G  MSE PLDPQ +KM++ SP YNCSNEIL++ +MLS P  F+RP++A K ADEAKA+F H+DGDHLTLLN YHAYKQ   +  WC+ENF+N R++ SA+NVR QL R++TR  + + S DFNS +YY  I+KA+ AG +MQ+AHL+RTG YLTVKD+Q+V +HPS+ +D KP WV+Y ++VLT++N+IRT+T + G                                           DWL++IAPHYYDL+NFP  E K  LE    RLY
Sbjct:    1 MGTERKRKVSLFDVVDETSVSAKLRAASNGAAATATGGNPSVNRWNGRPYTARYFDILEKRRTLPVWQQKEEFLRSLRDNQTLILVGETGSGKTTQIPQFVLETEGLGNRSMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVMQIHMCEPAGDILVFLTGEEEIEDACRKINKETNNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTQLGEMMSEFPLDPQMSKMLVISPKYNCSNEILSVSAMLSAPNCFLRPRDAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFVNSRALKSADNVRQQLVRIMTRFNLKMCSTDFNSREYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIYNEYVLTTRNFIRTVTDIRG-------------------------------------------DWLIDIAPHYYDLSNFPSCEAKRVLE----RLY 709

[Close]

BLAST of NO02G00870 vs. NCBI_GenBank
Match: XP_021305823.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1 [Sorghum bicolor] >KXG39505.1 hypothetical protein SORBI_3001G392300 [Sorghum bicolor])

HSP 1 Score: 949.5 bits (2453), Expect = 6.300e-273
Identity = 473/757 (62.48%), Postives = 572/757 (75.56%), Query Frame = 0

Query:   12 MGGARKQRIDLSDL------------KPAGGGNGGGIAGQGTVNPYTNRQYSSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQFLVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFEDCSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGLLKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNYTSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMVLSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPLVSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDWLLEIAPHYYDLANFPKGETKNELEACAKRLY 757
            MG  RK+++ L D+              + G       G  +VN +  R Y++RYF+IL KRR LPV++  +E L  ++ NQ +++ GETGSGKTTQIPQF+++A    +   VACTQPRRVAAMS+++RV+EEMDVT+GEEVGY+IRFEDCSS KT+LK+LTDGMLLREAM DP LEKYKVIVLDEAHERTLATDVL GLLKEVL+ RPD+K+VVMSATL+AEKFQ YF  APL++VPGR+  VE+FYT EPERDY++AAIRT +QIH+CE  GD+LVFLTGEEEIEDACRKI  E  N     G + V PLYS+LPP  QQKIF  AP P   GGPPGRK+VVSTNIAETSLTIDGIVYV+DPGFSKQK+YNPR+RVESLLVSPISKASA QR+GRAGRT+PGKCFRLYTEKSF +DLQ QTYPEILRS ++N VLTL KLG+DDLVHFDFMDPPAPETL RALE LNYLGA+ DEG +TQ+G  MSE PLDPQ +KM++ SP YNCSNEIL+I +MLSVP  F+RP+EA K ADEAKA+F H+DGDHLTLLN YHAYKQ   +  WC+ENFIN R++ SA+NVR QL R++TR  + + S DFNS +YY  I+KA+ AG +MQ+AHL+RTG YLTVKD+Q+V +HPS+ +D KP WV+Y ++VLT++N+IRT+T + G                                           +WL++IAPHYYDL+NFP  E K  LE    RLY
Sbjct:    1 MGTERKRKVSLFDVVDETSVSAKLGRAASNGAAATAAGGNPSVNRWNGRPYTARYFEILEKRRTLPVWQQKEEFLRSLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINNMGDQVGTVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTQLGEMMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLSVPNCFLRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINSRALKSADNVRQQLVRIMTRFNLKMCSTDFNSREYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIYNEYVLTTRNFIRTVTDIGG-------------------------------------------EWLIDIAPHYYDLSNFPSCEAKRVLE----RLY 710

[Close]

BLAST of NO02G00870 vs. NCBI_GenBank
Match: PSC68964.1 (putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Micractinium conductrix])

HSP 1 Score: 949.1 bits (2452), Expect = 8.200e-273
Identity = 472/755 (62.52%), Postives = 577/755 (76.42%), Query Frame = 0

Query:   16 RKQRIDLSDLKPAG------GGNGGGIA--------GQGTVNPYTNRQYSSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQFLVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFEDCSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGLLKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTPEPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNYTSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHFDFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMVLSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHLTLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPLVSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSSVLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDWLLEIAPHYYDLANFPKGETKNELEACAKRLY 757
            RK+++++ +  PAG        NG GI           G VNPY  R YS+RY  IL+ R+GLPV++   + +  V  +Q I++ GETGSGKTTQI QF+ +AGY ++G  V CTQPRRVAAMS+A+RV+EEMDV LGEEVG++IRFE+CS  +TI+KF TDGMLLREAM  P LEKY VI+LDEAHERTLATDVL GL+KEVL++R D+K+VVMSATL+AEKFQ YF DAPL++VPGR+  VE+FYT EPERDY++AAIRT +QIH  E PGD+LVFLTGEEEIEDACRKI  E  N     G + V+PLYS+LPP QQQ+IF  AP    PGGP GRK++VSTNIAETSLTIDGIVYV+DPGF+KQK+YNPR+RVESLLVSPIS+ASA QR+GRAGRT+PGKCFRLYTE+SF KDLQEQTYPEILRS + +VVL L KLG+DDLVHFDFMDPPAPETL RALE LNYLGA+ DEG +T++G  M+E PLDPQ AKM++++P++ CSNEIL+I +MLSVP VFMRP+EAA+ ADE+KA+FAH+DGDHLTLLN YHAYKQ G + DWC+ NF+N RS+ SA+NVRSQL R+ TR++V LVS +FN  DYYT I+KAL AG +MQ+AHL+RTG YLT KD+Q+V +HPS+ LD KP W LY +FVLTSKNYIRT+T + G                                           +WL+++APHYYD+ANFP+GE +  LE    RLY
Sbjct:    3 RKRKLEVYEAAPAGAAPPSAAANGSGIGFSQQTAAPPSGDVNPYNGRTYSTRYHQILAGRQGLPVWQAKADFINMVNSSQTIILVGETGSGKTTQIAQFIAEAGYCQEGKKVVCTQPRRVAAMSVARRVAEEMDVGLGEEVGFSIRFEECSGPRTIIKFATDGMLLREAMTAPLLEKYSVIILDEAHERTLATDVLFGLIKEVLKQRADLKLVVMSATLEAEKFQGYFLDAPLIKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHSAEPPGDILVFLTGEEEIEDACRKIVKEVNNMGEAVGPIKVYPLYSTLPPQQQQRIFDPAPPAARPGGPAGRKIIVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISRASAHQRAGRAGRTKPGKCFRLYTEQSFYKDLQEQTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDEGNMTEVGSIMAEFPLDPQLAKMIVAAPEFKCSNEILSIAAMLSVPMVFMRPREAARAADESKARFAHIDGDHLTLLNVYHAYKQHGEDPDWCYSNFLNNRSLKSADNVRSQLVRICTRLQVKLVSTNFNDRDYYTNIRKALVAGYFMQVAHLERTGHYLTAKDNQVVYLHPSTCLDHKPEWALYQEFVLTSKNYIRTVTDIKG-------------------------------------------EWLVDLAPHYYDMANFPQGEARRALE----RLY 710

The following BLAST results are available for this feature:

BLAST of NO02G00870 vs. NCBI_GenBank

BLAST of NO02G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM30580.1	0.000e+0	86.78	Helicase-associated domain protein [Nannochloropsi...	[more]
CBJ26788.1	2.500e-293	70.81	conserved unknown protein [Ectocarpus siliculosus]	[more]
PRW60688.1	2.600e-274	63.00	putative pre-mRNA-splicing factor ATP-dependent RN...	[more]
OAE35059.1	3.300e-274	63.24	hypothetical protein AXG93_3253s1250 [Marchantia p...	[more]
XP_024362762.1	4.400e-274	63.16	probable pre-mRNA-splicing factor ATP-dependent RN...	[more]
XP_005852221.1	4.400e-274	62.93	hypothetical protein CHLNCDRAFT_33628 [Chlorella v...	[more]
PAN49960.1	5.700e-274	63.01	hypothetical protein PAHAL_D02463 [Panicum hallii]...	[more]
XP_008672152.1	4.800e-273	62.43	putative pre-mRNA-splicing factor ATP-dependent RN...	[more]
XP_021305823.1	6.300e-273	62.48	probable pre-mRNA-splicing factor ATP-dependent RN...	[more]
PSC68964.1	8.200e-273	62.52	putative pre-mRNA-splicing factor ATP-dependent RN...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL016	nonsL016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR000	ngnoR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK006685	NSK006685	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G00870.2	NO02G00870.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO02G00870.1	NO02G00870.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573701	gene_664	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100033g25	gene98	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G00870.2	NO02G00870.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO02G00870.1	NO02G00870.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO02G00870 ID=NO02G00870|Name=NO02G00870|organism=Nannochloropsis oceanica|type=gene|length=5058bp
AAAACAATAGACGCGGCGGAGGAAGCCGACCTCCTCCCTCCACCCTTTGC
TTGGGTAGCCTTCCACTCCATTCCTCCTCGTACACAGCGGCGCCGCACTA
ACCAGGAGCAGTAGTGCAGCTAGAGCACGGCAGCATGAGCAAGCGTCCAT
TTGACAGTGGCGTGGGTATGGGTGGCGCGCGCAAGCAACGTATTGATTTG
TCGGACCTGAAGCCTGCTGGAGGTGGTAATGGTGGTGGGATTGCAGGCCA
AGGCACCGTAAATCCCTACACGAATAGGCAGTATAGCTCAAGATACTTTG
ATATCCTGTCGAAGCGACGGGGTTTGCCGGTGTACGAGTTTTTGGACGAG
CTCTTGACCAAGGTGAAGAAGAACCAGgtatgtatatggctggatgtggt
gcgtggaggtcgagggagtagatggcgcggtatgggctctttaccaccaa
caatagcacacttcgagcgcgtgtccagtcacaacgtgatcttgacagtg
atgtattttcccctcacctcttcactacctccttccatctcctcccttcc
tccctccttcccctcctcccgtcagGTGATCGTCGTGGAAGGTGAAACCG
GCTCTGGTAAGACAACCCAAATTCCCCAGTTCCTGGTCGATGCCGGCTAC
ACCCGCGATGGGCACTGTGTGGCCTGCACGCAGCCTCGGCGAGTGGCAGC
CATGAGCATCGCGAAGCGTGTGTCGGAGGAGATGGACGTGACACTCGGGG
AGGAAGTAGGGTACACCATCCGATTTGAAGACTGCAGCAGTCAGAAGACG
ATTTTGAAATTTTTAACGGACGGGATGCTGTTAAGGGAGGCCATGTTCGA
TCCGCACTTGGAGAAGTATAAGGTCATTGTGTTGGACGAAGgtagacagg
gagggagggaggtaggatgggcgatgaatctctgttctttacctgtatgt
atttgacgtggtcgtttaagctgatggatagattctgtggtttccaaaag
ataagcccacccctctctccctccctccttctattcccccttccttcagC
CCACGAGCGTACCCTCGCAACTGATGTTCTGATGGGCCTGCTCAAAGAGG
TCCTGCAACGACGGCCGGACATGAAGATGGTGGTAATGTCCGCCACCCTA
GACGCGGAGAAGTTCCAGAAGTACTTTGGAGATgtgaggagggagggagg
gagggagggagggagggagggagggagggagggagggagggggaacatgg
caaccatcagctgccgctgcaagcggagtatccactcacaccctttcttc
cccccttctcttcccttctgtccctccctccttccctccgtccgtccttc
tcctccttctcctccagGCCCCGTTGCTGCGTGTGCCGGGGCGCATGTTT
AAGGTGGAGGTGTTCTATACCCCCGAGCCCGAGAGGGATTACGTCCAGGC
CGCCATTAGGACGACACTGCAGgtatgtcgcaaggagggagggaaggaga
tgtaaatgcgcaccccccgacatcactctttccatcgcggtgttctagaa
ggaaccatcaccggcggcggctccagtcgtgggcagatcatacacccctc
cggttttttcccttgccttccctttcttttctccttctcctttgccactt
cttcttttcttcgtcatttcctctcgcatcttgcaggagggaaggaggga
gggagggagggagggagggagggagggagggagggaggggttgaagatgg
aggtcggagaatacaaaccaccgggctcggtgtcctacgccgtgcttggc
atatctattccccacatatatatatatacatatatatatatgtatatgta
aaatagatttatatagatatattgaccgctaagtagacaaggataaatat
gtaaaacgatatgcttctattctctccttccccttctcttccaaccaact
gattactaggccacgctgaccctccctccccccaccacttccccacagAT
CCACCTCTGCGAGGAACCTGGTGACGTCCTAGTCTTCCTCACGGGTGAGG
AGGAGATCGAGGACGCCTGCCGCAAGATCCGAGACGAGAGTTTGAACTAC
ACCAGCACCCACGGAGAGCTGGCGGTGTTCCCCCTCTACTCCTCCCTCCC
TCCCATCCAACAGCAGAAAATTTTTTCCGACGCTCCCGGGCCGAAGGTAC
CCGGAGGACCGCCGGGGCGGAAGGTGGTGGTGTCGACAAATATCGCCGAA
ACGTCGTTGACGATTGATGgtaagggggggagggtgtaaggctgggagaa
ggagagtgaaggggagttcgggcacatgggtgaatggaagtgtgtgtggt
tttgaaatgcctggagaacgcttgagctttgattatttcctctcgtcctc
cctccctcagGCATCGTCTATGTTGTGGACCCCGGTTTCTCCAAGCAGAA
GATTTACAACCCTCGCGTTCGCGTGGAGTCCCTCCTCGTCTCTCCCATCT
CCAAGGCCAGgtccgcccctccttccctccctccttccctccttccctcc
gttcctacgagacgtgcaacttaatcttttctccttcccttcctccctcc
cccctccctccttcccagCGCGCAACAACGCAGCGGCCGTGCCGGTCGAA
CTCGTCCTGGGAAATGCTTCCGTCTCTACACCGAGAAGAGCTTCCAGAAA
GACTTGCAGGAACAAACATACCCGGAAATTCTGAGGAGTCAGATGAGCAA
TGTGgtacgtgtcgagggaaagcgggaagggacgcttctcgtgacgagag
atggtcgaatttgtctgatttaatgccccagaaatctttgggaatcgtgc
tctctcaggggtctctcttccccttattttcatgccctccctccctccct
ccctccctcctccccgcgtggtgagcgtatgctgggcgacatttctcctc
cattctcgctttccagtctatgatccacgccagaaccaatctttatcggg
cacaaggccattattactagggatttgtctccacaactcctctagtttgt
caccctgcgcacatttgtccactacccatgcccccccttccttccttccc
tcctcccctcccttcctcctgcctctcttctcaccctctgtgtccttgtc
tctttcctctctctccctgcttcctttccttcctccccccttcctttcca
tatgtcgacacatgacatcatcgctcaccacttttttcttcctttccccc
cttctccctcccttcatccctcagGTGCTGACCCTCCTCAAGCTCGGGGT
GGATGACCTCGTTCACTTCGACTTTATGGACCCCCCGGCCCCCGAGACCT
TGGCTCGGGCGTTGGAGGAGCTGAATTACCTCGGGGCCATCTCGGACGAA
GGACTCATTACGCAGgtaagagggaaggagagacaggcaccggagtgagg
gctttggcacgtgcggaacgaccaaaggaagtgacatgacgcataccaca
ctaattttccctccctccctccctccctccctccctccctcccttttcta
gATGGGGCACAAGATGTCGGAGCTTCCCCTCGACCCCCAGGCGGCCAAGA
TGGTCCTTAGCTCCCCCGACTACAACTGCTCCAACGAGATCCTTACCATC
GTGTCCATGCTGAGCGTTCCTCAGGTCTTCATGCGCCCCAAGGAAGCCGC
CAAGCGCGCCGACGAGGCCAAGGCACAGgtagggccggggcgaggggggg
gggagggagggaaggagctaggtagggtccatataggtgtgatggaatgt
gcaccacaagcaccagaaacctaacacttatctcacccttccctctgtct
cctcttcccccccccctttcttccgtcagTTTGCGCACGTGGACGGCGAC
CACTTGACGCTCCTCAACGCCTATCACGCCTACAAACAGCAGGGGGGCAA
CAAGGACTGGTGCTGGGAAAATTTCATCAACGTCCGCTCCATGGGCAGCG
CCGAAAACGTGCGGAGCCAATTGGAAAGgtacggtgatttaatttcatta
gatggggtgctttgattctgttttggtacatagaaatggttattaggggc
tcattccatttttttccccaacccatttcttgcttcactccccccctccc
tgcctccctcattgtttggcttttgttcgtcgttcctctcaccttgcctt
cccttccgacgttcagGATGCTGACCCGCATGGAGGTGCCCCTCGTTTCC
CCCGACTTTAACTCTCCAGATTATTATACCCGGATTAAAAAGGCCCTCAC
CGCTGgtaagcctcgagagagggaattgggaaaggacggagggtatagga
gggagggaagggggaaggaaggaaggggaaaaagagagagagtaagggcg
tagatatccggcttacaatccactcatcgcttcccccctctcttcctccc
tccctcagGCGGCTACATGCAGATCGCCCACTTACAGAGAACGGGGCAGT
ACCTAACTGTCAAGGACCACCAGATCGTTTCGATCCACCCATCGTCTGTG
TTGGACATGAAGCCTCCATGGGTGCTGTACGCGGACTTTGTCCTCACCAG
CAAGAATTATATTCGCACGATCACGGCGGTGGTAGGTAGAGGGAGGGACG
AGCAGCGGGGGAGGGAAGAAGGGAAGAAAGAGAGTGAAAGTGTTCGTCGT
ACCCAGCAGCACTCAACGTCCATGACCTTAACGCCTACCCTCCCTCCCTC
CCTCCCTCAGGAGTGCGACTGGCTCCTGGAGATCGCCCCTCATTACTACG
ACCTGGCCAATTTCCCCAAGGGCGAGACCAAGAATGAGCTCGAGGCGTGC
GCCAAGCGGCTCTATCAACTTTGAACTCATGGGAGGGAGGGACGGAGGGA
AGGAGGGGAGGAGGGAGGACGGATAGGTGACATACATGCCTGGGAGTGCG
CGCACGGATGCGCGTATGATATTGTGTGGCTGTGTGTTGGCCTTGTAGTA
ATAATGACGAGATGAACAAATTCAAAAAGGATACAACAGACGAAAGCGAG
AACGACGA

protein sequence of NO02G00870.2

>NO02G00870.2-protein ID=NO02G00870.2-protein|Name=NO02G00870.2|organism=Nannochloropsis oceanica|type=polypeptide|length=759bp
MSKRPFDSGVGMGGARKQRIDLSDLKPAGGGNGGGIAGQGTVNPYTNRQY
SSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQF
LVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFED
CSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGL
LKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTP
EPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNY
TSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAE
TSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGR
TRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHF
DFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMV
LSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHL
TLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPL
VSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSS
VLDMKPPWVLYADFVLTSKNYIRTITAVVGRGRDEQRGREEGKKESESVR
RTQQHSTSMTLTPTLPPSLPQECDWLLEIAPHYYDLANFPKGETKNELEA
CAKRLYQL*

protein sequence of NO02G00870.1

>NO02G00870.1-protein ID=NO02G00870.1-protein|Name=NO02G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=716bp
MSKRPFDSGVGMGGARKQRIDLSDLKPAGGGNGGGIAGQGTVNPYTNRQY
SSRYFDILSKRRGLPVYEFLDELLTKVKKNQVIVVEGETGSGKTTQIPQF
LVDAGYTRDGHCVACTQPRRVAAMSIAKRVSEEMDVTLGEEVGYTIRFED
CSSQKTILKFLTDGMLLREAMFDPHLEKYKVIVLDEAHERTLATDVLMGL
LKEVLQRRPDMKMVVMSATLDAEKFQKYFGDAPLLRVPGRMFKVEVFYTP
EPERDYVQAAIRTTLQIHLCEEPGDVLVFLTGEEEIEDACRKIRDESLNY
TSTHGELAVFPLYSSLPPIQQQKIFSDAPGPKVPGGPPGRKVVVSTNIAE
TSLTIDGIVYVVDPGFSKQKIYNPRVRVESLLVSPISKASAQQRSGRAGR
TRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVDDLVHF
DFMDPPAPETLARALEELNYLGAISDEGLITQMGHKMSELPLDPQAAKMV
LSSPDYNCSNEILTIVSMLSVPQVFMRPKEAAKRADEAKAQFAHVDGDHL
TLLNAYHAYKQQGGNKDWCWENFINVRSMGSAENVRSQLERMLTRMEVPL
VSPDFNSPDYYTRIKKALTAGGYMQIAHLQRTGQYLTVKDHQIVSIHPSS
VLDMKPPWVLYADFVLTSKNYIRTITAVECDWLLEIAPHYYDLANFPKGE
TKNELEACAKRLYQL*

Synonyms

Publications