NO02G00770, NO02G00770 (gene) Nannochloropsis oceanica

Overview
NameNO02G00770
Unique NameNO02G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2764
Alignment locationchr2:258305..261068 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:258305..261068 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000313PWWP_dom
Homology
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BLAST of NO02G00770 vs. NCBI_GenBank
Match: EWM30565.1 (hypothetical protein Naga_100033g17 [Nannochloropsis gaditana])

HSP 1 Score: 384.0 bits (985), Expect = 1.100e-102
Identity = 313/709 (44.15%), Postives = 370/709 (52.19%), Query Frame = 0 
Query:   42 LTPSQTETAMLLALRTGGHLGWGKPKDEPWWPCIAARSYTVLHHFTSTQEPRVPLGKGRVLAYFLGDDTYDILDEGWFEVGYILRKPTKTQIVARPEYAEGTVVGDKLLARIEALDEEEGMKLRGLLSRGVGRMVQVYVEGKQAAETXXXXXXXXXXXXXXXLGSPACFMADTWWPAVAVDSWEVGERARLGLAIPQRELSRGEALVFKLGSWVPPSQRWDVVRRCSPYAXXXXXXXXXXXXXXXXGAGEGGDFNKCMLEAAKTEAKALVAPPMDGETRRSR--MGRGFVFSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKIKNRLLADPPSI-----------STTTTCQS-LPPSRPLTPEEVEKIRRLAEGLLFMNEIDRVQSGRSLRHDLNALRLFISRGKEMTQYHLMRLEMGLRAYVGRMRAQLLRAKREFGRWEQKGRDGRRGGRQERKGVYGAMEVTVRQARRSLEGQQREL--LMVQRGVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPLDALPH-------------EGEEGGTEEQKEEGMKIRAAALFRVGKEVTEDQIAAAEHLLRACEDFRQRLL 722
            LTPSQT+TAMLLALR GG LGWGKP DEP+WPCIAARSY+VLH FTSTQ PR PLGKG++LAYFLG+DTYDILDE WFEVGY+LRKP+K Q+ ARPEYA G  +G+ L AR+++LD+EE  KLRGLL R  GR+VQV+ +  +   T                G  +       WPAVAVDSWE G R  LGL++P+  LSRGE LVF++GSWV P +RW VVR  +P+                  AG+GGD  + MLEAA+ EA  LV   +    RR+R    +G    +G       XXXXXXXXXXXXXXXXXX                          XXXXXXXXXXXXXXXXXXXXXXX                                             + R     P             S ++  QS LPP RPLTPEEVEKIRRLAEGLL+M  ++  Q    LR DLNALRLF+SRGKE++Q  L RLE GLR Y+GRMRAQLLR +RE+                +   VY A+E TV  A R LE ++  L  L+ Q   GG                                                     T    A  H              G          E   ++AAALFR+G+E+TEDQIAAAEHLLRACEDFR RLL
Sbjct:   89 LTPSQTQTAMLLALRAGGSLGWGKPNDEPFWPCIAARSYSVLHLFTSTQAPRQPLGKGQLLAYFLGEDTYDILDEAWFEVGYVLRKPSKVQLAARPEYAAGVALGEGLQARLDSLDDEEAEKLRGLLRRKEGRVVQVHDD--KWYGTAVGPSEGDGARGRGDSGYVSGHATGICWPAVAVDSWEAGNRLGLGLSLPKCTLSRGETLVFRMGSWVAPKERWAVVRHLTPFVCTEGSFETPSAAPGPVKAGKGGDLWQSMLEAARAEACTLV-DSLARTWRRTRGAQSQGVETDRGGTRAEGVXXXXXXXXXXXXXXXXXXGGRNEARDRQRAGGGPCRVGSGEEGEXXXXXXXXXXXXXXXXXXXXXXXNQETMSLQGVDGRALREGNASTARVETPTALGFVRKEAGDQGGCRQGRGNGTYPGAPGEGQPDSMNHSVSSRNQSRLPPPRPLTPEEVEKIRRLAEGLLYMAGLEGGQGEDGLRRDLNALRLFVSRGKEISQPTLARLERGLRTYMGRMRAQLLRGRREY-XXXXXXXXXXXXXEVDATEVYKALESTVLAATRRLEKRRGPLQRLLGQARRGGAGAREGGNGGCVQARGREQLMMDVEVALDALTRVRDTLLATQASTGQKEDKEETTRPTASSHGPRHPQVARTIASPGRSAIHGRDDNESSMLQAAALFRLGRELTEDQIAAAEHLLRACEDFRVRLL 793
The following BLAST results are available for this feature:
BLAST of NO02G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30565.11.100e-10244.15hypothetical protein Naga_100033g17 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006675NSK006675Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00770.1NO02G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627101gene_655Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100033g17gene90Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00770.1NO02G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00770 ID=NO02G00770|Name=NO02G00770|organism=Nannochloropsis oceanica|type=gene|length=2764bp
GATGGACCCCATCCCGCTGGAGCGCCTCAATATACCGATGTCGTCGAGTT
TCTGGGTCTTCCCAGCTGCGACTGCCGCGTCTGGATCGTGTTGAGGCTGG
CCAGAGATAATGGGGTGGTGGGGAGGTTTTTCTGTCGAACTTGACTCGGA
GGCACTGTATGTATAAGCGTAGCTGCCCAAATTCGCCCTGCTTTCTTTTC
ACCATACCATAAGCAGAAACTCGACCGTGAAAGCATCTCATACTACCTAC
ATATTCTACCAATGAAGTAGATGGTGATGGGCAGGAAGCGCGGGCGTCCG
CCCAAAGTCGCCGCGTCCAGCAGCAACCGGGCAGTGCCTGATTCCCCTTC
CTCCTCCTCCTGCTCCTCTTCCTCCTCCAGCTCCAGCTCCCACCTCACAC
CTTCGCAAACCGAGACTGCCATGCTTCTAGCCCTGCGCACAGGTGGCCAT
CTCGGGTGGGGCAAGCCCAAAGACGAACCGTGGTGGCCTTGCATTGCTGC
GCGCTCGTACACGGTCCTCCATCACTTCACCAGCACGCAAGAGCCCCGCG
TCCCCCTGGGAAAAGGACGAGTATTAGCTTACTTCCTCGGAGATGATACC
TACGACATCCTGGACGAAGGTTGGTTTGAGGTGGGTTACATCTTGCGGAA
ACCCACAAAAACCCAGATTGTGGCGCGACCGGAGTACGCCGAGGGAACGG
TGGTAGGTGATAAATTGCTGGCACGGATTGAAGCTTTGGACGAGGAGGAG
GGAATGAAACTCCGCGGGCTTTTGAGCAGGGGGGTAGGTAGAATGGTCCA
GGTGTATGTGGAGGGGAAGCAAGCAGCCGAGACAGGGGCAGCTGGAGGAG
GAGGGGAAGGAGGAGATGAGAGTGATGAGTTGGGAAGCCCTGCGTGTTTT
ATGGCTGATACTTGGTGGCCAGCCGTAGCGGTGGACTCGTGGGAAGTCGG
GGAGAGAGCAAGATTAGGGCTGGCGATACCCCAGCGGGAACTTAGTCGAG
GAGAAGCCCTTGTATTTAAACTGGGCAGTTGGGTGCCACCATCGCAGAGG
TGGGATGTCGTGAGGCGCTGTAGCCCTTATGCTAGTAGCAGCAGCAGCAG
CAGCAGCGGCGGCGGCGGCGGTAGAATGTTGGGTGCGGGGGAGGGAGGAG
ATTTCAATAAATGCATGTTGGAGGCGGCGAAGACGGAAGCGAAGGCTTTG
GTGGCTCCACCGATGGATGGGGAGACAAGGCGGTCCCGGATGGGGAGAGG
ATTTGTGTTTTCGAAGGGTGAGGAGGAGGAGGAAGAGGAGGGAGGAGGGG
AGGATGTAGAGTCAATGATGGAAGGGAAACGACAACGGGGGAAGAGAAAG
GGAGGCGGGGAGGAGATGGGGGAGGAGAAGAAGAAGGATAAGGTGGAGAT
GGATGTAAAGAAGCCAATGTTAACGATTCGGTTCAAGACCACTTCGAGTG
GTGCAGCAGCTGCTGCTGCTGCCGCTCCTCCTCCTTCTCTTCCCGCGGTA
CCATTGAAGAAGCGACACAAGGGTTGCCCGCCTACCAGGGGCGGTGAGGC
TCTCTTCAAGAACAAAGAAGAGGAGGTGGAAGAGGAGAAAGAGGATGAAG
ACAAGGGTAACGTCACCTCCAAAATCAAGAACAGGCTTCTCGCGGATCCC
CCCTCCATCTCCACCACCACCACCTGCCAATCCCTCCCTCCCTCCCGCCC
TCTCACTCCTGAAGAGGTCGAAAAAATACGTCGTCTAGCGGAGGGACTCT
TGTTCATGAACGAGATTGACAGGGTCCAGAGCGGCCGCTCCCTCCGGCAT
GACTTGAACGCCCTTCGACTTTTTATCAGTCGAGGGAAGGAGATGACGCA
ATACCATTTGATGCGGTTGGAGATGGGTTTGCGAGCGTACGTGGGTCGAA
TGCGGGCGCAGCTCTTGCGAGCAAAAAGGGAGTTTGGAAGGTGGGAGCAG
AAGGGGAGGGACGGTAGGAGGGGTGGGAGGCAGGAGAGGAAGGGAGTGTA
TGGAGCGATGGAGGTGACAGTAAGGCAGGCAAGGAGGAGTTTGGAAGGGC
AGCAGAGGGAGTTGTTGATGGTGCAGCGAGGGGTGGGAGGGGGGAAAGGG
GAGGGGGGGGAAGGGGCGCAAGAGCGGCAGCAGGAGGAAGGAAGGGCCTT
GGAGGATGTACAGACAGCGTTGGATGCTTTGACCAGGTTGCAGCGGACGC
TACGGAAGACACGGCAGCAGCAGCAGCAGGAGGAGCAGCAGCAGCGCGAT
ACGGTCCCTTTGGATGCGTTACCGCATGAAGGGGAGGAGGGCGGGACGGA
GGAACAGAAGGAGGAGGGTATGAAGATCAGAGCGGCGGCGTTGTTTCGGG
TGGGGAAGGAAGTGACGGAAGATCAAATCGCTGCGGCGGAGCACTTATTG
AGAGCCTGCGAGGATTTCAGGCAGAGGTTGCTGAGGAAAGTGCAGCGCCA
GCAACAGCAGCAGCGGCGACAGCAGCGTCAGCAGCGGGGTGGCAAGAGAG
GGGGAGGGAGAAGGGGAGGAGAGAGGGAGGAGGTGAATCGACGGAAGTCG
CTGGCGGCGCAAAAGTTTTTTTTTGGAAAAGAATGCTGGAGCCCAGTGTA
TTGAGCGAGAGAGAGGGGAGGAAGGAGGGGGATGGAGGGGGTCTGCATCC
ATATGTAGAGGAGGGAGTCATGAAGTTACACAATAAGCCCTGGTAAAACT
GTAAGAAGCAGAACTAGGAACAAGATAATTTAAACAGAGAAAAAAAGCGA
GGCTTTCGATCATT
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protein sequence of NO02G00770.1

>NO02G00770.1-protein ID=NO02G00770.1-protein|Name=NO02G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=778bp
MVMGRKRGRPPKVAASSSNRAVPDSPSSSSCSSSSSSSSSHLTPSQTETA
MLLALRTGGHLGWGKPKDEPWWPCIAARSYTVLHHFTSTQEPRVPLGKGR
VLAYFLGDDTYDILDEGWFEVGYILRKPTKTQIVARPEYAEGTVVGDKLL
ARIEALDEEEGMKLRGLLSRGVGRMVQVYVEGKQAAETGAAGGGGEGGDE
SDELGSPACFMADTWWPAVAVDSWEVGERARLGLAIPQRELSRGEALVFK
LGSWVPPSQRWDVVRRCSPYASSSSSSSSGGGGGRMLGAGEGGDFNKCML
EAAKTEAKALVAPPMDGETRRSRMGRGFVFSKGEEEEEEEGGGEDVESMM
EGKRQRGKRKGGGEEMGEEKKKDKVEMDVKKPMLTIRFKTTSSGAAAAAA
AAPPPSLPAVPLKKRHKGCPPTRGGEALFKNKEEEVEEEKEDEDKGNVTS
KIKNRLLADPPSISTTTTCQSLPPSRPLTPEEVEKIRRLAEGLLFMNEID
RVQSGRSLRHDLNALRLFISRGKEMTQYHLMRLEMGLRAYVGRMRAQLLR
AKREFGRWEQKGRDGRRGGRQERKGVYGAMEVTVRQARRSLEGQQRELLM
VQRGVGGGKGEGGEGAQERQQEEGRALEDVQTALDALTRLQRTLRKTRQQ
QQQEEQQQRDTVPLDALPHEGEEGGTEEQKEEGMKIRAAALFRVGKEVTE
DQIAAAEHLLRACEDFRQRLLRKVQRQQQQQRRQQRQQRGGKRGGGRRGG
EREEVNRRKSLAAQKFFFGKECWSPVY*
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Synonyms
Publications