NO02G00750, NO02G00750 (gene) Nannochloropsis oceanica

Overview
NameNO02G00750
Unique NameNO02G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length723
Alignment locationchr2:249455..250177 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:249455..250177 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009069Cys_alpha_HP_mot_SF
IPR027179DUF1903
Homology
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BLAST of NO02G00750 vs. NCBI_GenBank
Match: EWM30573.1 (hypothetical protein Naga_100033g15 [Nannochloropsis gaditana])

HSP 1 Score: 87.4 bits (215), Expect = 2.900e-14
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0 
Query:   20 KNEMDRIQAFCQTKCKKFACAIQQCMERHQYQEKPCWKEIADWDICCDRIKARIGET 77
            K     IQ  CQ+KCK++AC IQ+C+ER+ YQEK CWKEIA WDICCD+IKA+ G++
Sbjct:   17 KGASPEIQRLCQSKCKRYACDIQKCLERNSYQEKSCWKEIAYWDICCDKIKAKDGKS 73
The following BLAST results are available for this feature:
BLAST of NO02G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30573.12.900e-1461.40hypothetical protein Naga_100033g15 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006673NSK006673Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00750.1NO02G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100033g15gene88Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00750.1NO02G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00750 ID=NO02G00750|Name=NO02G00750|organism=Nannochloropsis oceanica|type=gene|length=723bp
ATGGTTACTCCTCCAGGGCATCAGTCCCAGTCTCCCCAGCAGCCGACGTT
AGAGGGCAAAAATGAGATGGACCGGATCCAGGCCTTTTGTCAGACTAAAT
GCAAgtatgtggtatttgttgtcatgttgtgggaaggaggagggggaggc
ggccgggacgtacgtttgacgatcggtgaaagcccaatgtttagttgtgg
agagcggtctttcgcatgtgatgggactcatttacatgagtgttgatcta
gcattgaacagaggcttcttggctgtatggcactttgtcgcactgagtcg
tatggatgcctcactccctattcctcggacccctagGAAGTTTGCATGTG
CAATCCAGCAGTGCATGGAGCGACACCAATACCAAGAAAAGCCGgtacgt
acaacaaaatatatgggaggtggccttgcatcggttgtctgaatatttac
ccatgttgggtggtcaaaagctgggatgagcatttgttccgcgactcgct
ctcgtgttaacgccttcatgtctgctaatcctgttctccaccctgttgca
cccaccaatagTGTTGGAAAGAGATTGCGGATTGGGACATTTGCTGTGAT
AGAATCAAAGCACGGATCGGCGAGACGTCTACAATACCTTCGGCGTCCCC
CTCCTCCTCCTTTTCCTCCTCCTTTTCCTCCTCCTCCTTTTCCTCCTCCT
TTTCCTCCTCCTCACCCCCCTGA
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protein sequence of NO02G00750.1

>NO02G00750.1-protein ID=NO02G00750.1-protein|Name=NO02G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MVTPPGHQSQSPQQPTLEGKNEMDRIQAFCQTKCKKFACAIQQCMERHQY
QEKPCWKEIADWDICCDRIKARIGETSTIPSASPSSSFSSSFSSSSFSSS
FSSSSPP*
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Synonyms
Publications