NO02G00680, NO02G00680 (gene) Nannochloropsis oceanica

Overview
NameNO02G00680
Unique NameNO02G00680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length875
Alignment locationchr2:233708..234582 +

Link to JBrowse

Properties
Property NameValue
DescriptionBolA protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:233708..234582 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036065BolA-like_sf
IPR002634BolA
Homology
[Close]
BLAST of NO02G00680 vs. NCBI_GenBank
Match: EWM30589.1 (BolA protein [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 5.400e-30
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0 
Query:    3 IVTPSQIQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLLQRHRTVNKALAVELEHIHAITLKCLTPAQWEEKK 85
            I+TP+QIQSKLTEALQAV VEA D+SDGCGAKFE+LTVS  FEG+PLLQRHR VN ALA ELEHIHAITLKCLTP QW+E K
Sbjct:   43 IITPAQIQSKLTEALQAVFVEAKDMSDGCGAKFEILTVSPTFEGRPLLQRHRAVNAALAKELEHIHAITLKCLTPTQWDETK 124
[Close]
BLAST of NO02G00680 vs. NCBI_GenBank
Match: ELU04119.1 (hypothetical protein CAPTEDRAFT_17942 [Capitella teleta])

HSP 1 Score: 101.3 bits (251), Expect = 1.600e-18
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0 
Query:    5 TPSQIQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLLQRHRTVNKALAVELEHIHAITLKCLTPAQWEEKK 85
            TP++++ KL   L A HV+  DLSDGCGAKF  LTVSS FEGK LLQRHR VN  LA EL+ IHA + K LTP QWE  K
Sbjct:    4 TPAELEEKLRTGLDATHVKIEDLSDGCGAKFSCLTVSSQFEGKALLQRHRLVNGILAEELKTIHAFSQKTLTPQQWESLK 83
[Close]
BLAST of NO02G00680 vs. NCBI_GenBank
Match: XP_019530737.1 (PREDICTED: bolA-like protein 2 [Aedes albopictus])

HSP 1 Score: 101.3 bits (251), Expect = 1.600e-18
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0 
Query:    1 MSIVTPSQIQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLLQRHRTVNKALAVELEHIHAITLKCLTPAQW 81
            MS  T  Q++ KLTE L+A HVE TD SDGCG KF  + VSS F+GKPLLQRHR VN ALA EL+ IHA + K  TP QW
Sbjct:    1 MSGYTEEQLKQKLTEKLEATHVEVTDESDGCGGKFSAVIVSSQFQGKPLLQRHRLVNAALAEELKTIHAFSQKTYTPEQW 80
[Close]
BLAST of NO02G00680 vs. NCBI_GenBank
Match: XP_023230766.1 (bolA-like protein 2 [Centruroides sculpturatus])

HSP 1 Score: 100.5 bits (249), Expect = 2.800e-18
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:    1 MSIVTPSQIQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLLQRHRTVNKALAVELEHIHAITLKCLTPAQWEEKK 85
            MS  T   I++KL   L+  HVE  DLSDGCGAKF  L V+S F+GKPLLQRHR VN+ L  E++ IHA T K LTP QWE++K
Sbjct:    1 MSNYTKDYIENKLKTELETTHVEVEDLSDGCGAKFNALIVTSKFDGKPLLQRHRMVNEVLKEEMKVIHAFTQKTLTPEQWEKQK 84
[Close]
BLAST of NO02G00680 vs. NCBI_GenBank
Match: XP_019890102.1 (PREDICTED: bolA-like protein 2 [Ooceraea biroi])

HSP 1 Score: 100.1 bits (248), Expect = 3.600e-18
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 0 
Query:    5 TPSQIQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLLQRHRTVNKALAVELEHIHAITLKCLTPAQWEEKK 85
            T   I++KLTE L+A HVE  D SDGCGAKF V+ VS MF GKPLLQRHR VN  L  EL+ IHA + K LTP QWE+ +
Sbjct:    4 TEEYIKNKLTEELKASHVEVVDQSDGCGAKFSVIVVSDMFHGKPLLQRHRLVNTILEEELKTIHAFSQKTLTPEQWEKMR 83
[Close]
BLAST of NO02G00680 vs. NCBI_GenBank
Match: XP_002400558.1 (conserved hypothetical protein [Ixodes scapularis] >EEC00344.1 conserved hypothetical protein [Ixodes scapularis])

HSP 1 Score: 98.6 bits (244), Expect = 1.100e-17
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 0 
Query:    1 MSIVTPSQIQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLLQRHRTVNKALAVELEHIHAITLKCLTPAQWEEKKNA 87
            MS  T   ++ KL + L AVH++  D+SDGCGAK+  + VS  FEGK LL+RHR VN  LA EL+ IHA + K LTP QWEEKK A
Sbjct:    1 MSGYTKQYLEDKLRKELDAVHIDLEDISDGCGAKYNAIIVSPKFEGKALLERHRMVNTILAEELQVIHAFSQKTLTPKQWEEKKQA 86
[Close]
BLAST of NO02G00680 vs. NCBI_GenBank
Match: XP_015127104.1 (PREDICTED: bolA-like protein 2 [Diachasma alloeum])

HSP 1 Score: 98.6 bits (244), Expect = 1.100e-17
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 0 
Query:    5 TPSQIQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLLQRHRTVNKALAVELEHIHAITLKCLTPAQWEEKKN 86
            T   I+SKL + L+A HVE  D SDGCGAKF VL VS  FEGKPLLQRHR VN AL  EL+ IHA + K LTP QW+++++
Sbjct:    4 TEEYIRSKLIKELEASHVEVEDQSDGCGAKFAVLIVSDKFEGKPLLQRHRLVNAALEEELKDIHAFSQKTLTPEQWKKQQS 84
[Close]
BLAST of NO02G00680 vs. NCBI_GenBank
Match: XP_022783865.1 (bolA-like protein 2 [Stylophora pistillata])

HSP 1 Score: 98.6 bits (244), Expect = 1.100e-17
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:    1 MSIVTPSQIQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLLQRHRTVNKALAVELEHIHAITLKCLTPAQWEEKK 85
            MS ++   +Q KL + L  +HVE  DL+DGCG KF V+ VS  FEGKPLL +HR VN  LA EL+ IHA+TLK + PAQWE++K
Sbjct:    1 MSGISCEFLQEKLQKELNPIHVEVVDLTDGCGGKFSVVIVSDKFEGKPLLAQHRMVNDCLAEELKTIHALTLKTMKPAQWEKQK 84
[Close]
BLAST of NO02G00680 vs. NCBI_GenBank
Match: ACB70351.1 (BolA-related protein [Ornithodoros coriaceus])

HSP 1 Score: 98.2 bits (243), Expect = 1.400e-17
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 0 
Query:    1 MSIVTPSQIQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLLQRHRTVNKALAVELEHIHAITLKCLTPAQWEEKK 85
            MS  T   ++ KL + L  VHVE  D+SDGCGAKF  + VS  FEGKPLL+RHR VN  L+ ELE IHA + K LTP QW+ KK
Sbjct:    1 MSGYTKEYLEEKLRKELDTVHVELEDISDGCGAKFNAVIVSPKFEGKPLLERHRMVNTVLSKELEAIHAFSQKTLTPEQWQAKK 84
[Close]
BLAST of NO02G00680 vs. NCBI_GenBank
Match: XP_023721045.1 (bolA-like protein 2 [Cryptotermes secundus])

HSP 1 Score: 98.2 bits (243), Expect = 1.400e-17
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 0 
Query:    9 IQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLLQRHRTVNKALAVELEHIHAITLKCLTPAQWEEKKNA 87
            I+SKL + L+A HVE  D SDGCGAKF VL VS  FEGKPLLQRHR VN  L  EL+ IHA + K LT  QWE +K+A
Sbjct:    8 IKSKLQKELEATHVEVQDESDGCGAKFSVLIVSDKFEGKPLLQRHRLVNSILEEELKSIHAFSQKTLTTQQWENQKSA 85
The following BLAST results are available for this feature:
BLAST of NO02G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30589.15.400e-3081.71BolA protein [Nannochloropsis gaditana][more]
ELU04119.11.600e-1862.50hypothetical protein CAPTEDRAFT_17942 [Capitella t... [more]
XP_019530737.11.600e-1862.50PREDICTED: bolA-like protein 2 [Aedes albopictus][more]
XP_023230766.12.800e-1858.33bolA-like protein 2 [Centruroides sculpturatus][more]
XP_019890102.13.600e-1861.25PREDICTED: bolA-like protein 2 [Ooceraea biroi][more]
XP_002400558.11.100e-1755.81conserved hypothetical protein [Ixodes scapularis]... [more]
XP_015127104.11.100e-1760.49PREDICTED: bolA-like protein 2 [Diachasma alloeum][more]
XP_022783865.11.100e-1755.95bolA-like protein 2 [Stylophora pistillata][more]
ACB70351.11.400e-1757.14BolA-related protein [Ornithodoros coriaceus][more]
XP_023721045.11.400e-1762.82bolA-like protein 2 [Cryptotermes secundus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006665NSK006665Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00680.1NO02G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100033g6gene80Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00680.1NO02G00680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00680 ID=NO02G00680|Name=NO02G00680|organism=Nannochloropsis oceanica|type=gene|length=875bp
GATGGCATGGGAAAGAAGACGCAATCTCCGTTTTGGGGATAAGCGGATCA
ATCTAGATTGCTGGACATGCAGCTTGACGCCTGGGAGGATTTTTTAGTTC
GATGTGCTGTAGATTTGGTTGTGACCTGCTTTCGTTTAGCCAATACCCCG
CCTCACGTTTGCGTACATATCACCTAACTCCTGATTTGCACTCATCCTTC
CACAACACATACAGGAGGGAAGAGCAGAATCCATGTCCATTGTCACGCCT
TCCCAGATCCAAAGCAAGCTTACCGAAGCCTTACAGGCGGTGCACGTGGA
GGCAACAGACCTCTCAGATGGCTgtaagtagtctgtccggggatgaaggt
gcaagagtgggtgagcgctggacgtgttgacccatcaccttcagtggtga
aactctgagtttcggcctattgagggagcgctggacgtgttgaccgagcg
tcttccgtggtgagaatctgagttgcggcctataaagaggcctttcacac
tcttttatcagctgtttgctcaaaatcccgatctcccatgaacaagacat
gatattatcagaggacatgttggcagtaagttcaggcagtcccccattat
tattttaattctcccctttccccattcacctttagGCGGCGCCAAATTCG
AGGTCCTGACTGTCTCTTCCATGTTTGAAGGCAAACCGTTGCTCCAGCGA
CATCGCACTGTTAATAAAGCCCTGGCAGTCGAGCTGGAGCACATCCACGC
CATCACCCTCAAGTGTCTCACCCCCGCCCAATGGGAGGAAAAGAAAAATG
CAGGAAACTCGACGTAACAGTGACGGATAGGTTGCAGAATTAGAAGAGGG
CGAATTCAAATAATTTAAATTTATA
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protein sequence of NO02G00680.1

>NO02G00680.1-protein ID=NO02G00680.1-protein|Name=NO02G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MSIVTPSQIQSKLTEALQAVHVEATDLSDGCGAKFEVLTVSSMFEGKPLL
QRHRTVNKALAVELEHIHAITLKCLTPAQWEEKKNAGNST*
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Synonyms
Publications