NO02G00540, NO02G00540 (gene) Nannochloropsis oceanica

Overview
NameNO02G00540
Unique NameNO02G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length947
Alignment locationchr2:187609..188555 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:187609..188555 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G00540 vs. NCBI_GenBank
Match: EWM30613.1 (hypothetical protein Naga_100129g9 [Nannochloropsis gaditana])

HSP 1 Score: 144.1 bits (362), Expect = 5.400e-31
Identity = 88/205 (42.93%), Postives = 109/205 (53.17%), Query Frame = 0 
Query:    3 MSGRVAAMRWCR-ISACALGLLCLFGLATLSAGGKRGKCPGFMSRAPAAVGELSRRXXXXXXXXXXXXXXXXXXXXXXXXLQRHAISASS----NSRRDVMIKGGVSTLLGMLGLATTKPPRI---AXXXXXXXXXXXXXXXXKKWMSGKSEKPRGSKDRTGTKKDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCQT 200
            M G  A   W R     +LG+  L G+   S+ GK   C GF   AP  +G  +RR                        ++    +  +    ++R + +     S L+G L L T  PPR+   A                ++W+SGKSEKPRGSKDRTGTK+DSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCC+T
Sbjct:   23 MQGVAALPAWRRPRMPLSLGVFWLLGVTVASSDGKCRSCAGF---APVQMGGHTRRLSHTPSPLSLSKTSTPLGVITATKVKAKCSNVRTYIDVSTRGEFVTHTTASLLVGALSLVTITPPRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKT 224
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BLAST of NO02G00540 vs. NCBI_GenBank
Match: CBN76866.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.5 bits (223), Expect = 7.000e-15
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 0 
Query:  138 KKWMSGKSEKPRGSKDRTGTKKDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCQT 200
            K+W+SGK  +P+GS D+TGT+K+S YLRCLS+C  +C+KP  GP +D  ECL+ACQD CC +
Sbjct:  121 KEWISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPERDREECLQACQDECCMS 182
The following BLAST results are available for this feature:
BLAST of NO02G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30613.15.400e-3142.93hypothetical protein Naga_100129g9 [Nannochloropsi... [more]
CBN76866.17.000e-1558.06expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006639NSK006639Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00540.1NO02G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573564gene_624Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100129g9gene64Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00540.1NO02G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00540 ID=NO02G00540|Name=NO02G00540|organism=Nannochloropsis oceanica|type=gene|length=947bp
ATGACGATGTCTGGAAGAGTGGCTGCTATGAGGTGGTGTCGGATATCCGC
CTGTGCCTTGGGTTTGTTGTGCCTGTTTGGGCTGGCCACGCTGTCCGCAG
gtgagagtggatggagaggtcgagggagggagggctagccgaccgacggt
cacatttctgcgtccctagaatcactctgcacacacatgcactcatgctg
tagGCGGAAAGCGTGGCAAATGTCCAGGATTTATGTCAAGAGCACCAGCA
GCAGTAGGAGAACTCTCAAGAAGGCCTTCATCATCATCAGCATCATCATG
CCACGCTGCAAGACGGACACCACCACCCACACCTTTGACGCCACCTCTTC
AAAGACACGCTATTAGTGCCAGCAGCAATAGTCGACGTGACGTAATGATC
AAAGGTGGAGTTAGCACTTTGCTGGGGATGCTTGGCCTGGCAACGACAAA
ACCACCTCGCATTGCTTCTGCCGCAGATGCCCCCGCCGCCCCTGCAGCCC
CTCCAACCGGCCCCAAGAAATGGATGAGCGGAAAGAGTGAGAAACCACGA
GGTAGCAAGGATCGAACAGGCACCAAGAAGGACAGCAATTACTTAAGGTG
TTTGAGTGATTGTACGACTGAATGTCGGAAGCCGGGGCAAGGTCCGAGCA
AGGACAATGCGGAGTGTTTGGAGGCTTGTCAAGATTACTGCTGTCAGACg
tacgaacagtgcacgtatacacaaaactacgaagggtaacacaggagttg
ggtccaaaaacgcacgtagataactggcgagataggcaaaaattgataaa
gtaatgaagtcaacacaaacttgaatgaatcagaaggagacaaaaggcag
cagcaggataccgctcctaaaccccagCAAATCCACCAGCAGCTGTAGCA
ATAGCAGCAGCAGTAGTAGCAGCAGTAGCGTGGGATTCGCTCTGTAA
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protein sequence of NO02G00540.1

>NO02G00540.1-protein ID=NO02G00540.1-protein|Name=NO02G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MTMSGRVAAMRWCRISACALGLLCLFGLATLSAGGKRGKCPGFMSRAPAA
VGELSRRPSSSSASSCHAARRTPPPTPLTPPLQRHAISASSNSRRDVMIK
GGVSTLLGMLGLATTKPPRIASAADAPAAPAAPPTGPKKWMSGKSEKPRG
SKDRTGTKKDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCQTK
STSSCSNSSSSSSSSSVGFAL*
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Synonyms
Publications