NO02G00410, NO02G00410 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G00410
Unique Name	NO02G00410
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2701
Alignment location	chr2:144004..146704 -

Link to JBrowse

Properties


Property Name	Value
Description	Disulfide isomerase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:144004..146704 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis
GO:0045454	cell redox homeostasis

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR013766	Thioredoxin_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0016853	isomerase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005623	cell

Homology

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BLAST of NO02G00410 vs. NCBI_GenBank
Match: EWM30622.1 (disulfide isomerase [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 1.000e-50
Identity = 102/160 (63.75%), Postives = 119/160 (74.38%), Query Frame = 0

Query:   23 APLPSMQAAAGAD--ESGVITLTAANFRENVEDGNTWLVDFYAPWCGHCVKLDPVLDEVVATVRDSLRIGKVDATVHTKLGKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLALPPALPLPTPEALSSYLRSLPAPGVGFVLGR 181
            APLP   A   AD     V+TLT  NFRE+VEDGNTWLVDFYAPWCGHCV+L+PVLDEV A V D LRIGKVDAT+HT+L K+FG+SG+P+LKI  PP KE  E  G++SNY+G RT E +  LA RL+ P    LPTPEAL+ +LRSL    VGFVLGR
Sbjct:   26 APLPLSVAIDHADLTAGNVVTLTQDNFREHVEDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRLSAPALAHLPTPEALAGFLRSLQNASVGFVLGR 185

[Close]

BLAST of NO02G00410 vs. NCBI_GenBank
Match: EWM30625.1 (hypothetical protein Naga_100440g4 [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 6.700e-34
Identity = 78/139 (56.12%), Postives = 98/139 (70.50%), Query Frame = 0

Query:  319 WAGFVKNFGIAKTELPSFFVLDFPSERYWAMGGDGGMGSKGMEFVEGEAAMESMGAFLVDVVEGKVPAKRQGFLGGMPAALWSRLSDMWPWSLGLLLPLGWLIALCLGGGLGNDEEEEELRRERVGGVRRVEGKAEQED 458
            W G++ NFGI K  LPSFFVLDFPS+++W +   GG+      +   E A +++ AFLVDVVEGKVPAK+ G LGGMPAA+W+R+ D+WPWSL LLLPLGW+ A CLGG    D+EEEELR E  G   R  G A ++D
Sbjct:    3 WGGWMPNFGIGKDNLPSFFVLDFPSQKHWVLEAKGGL----RVWATQEVAEDTLAAFLVDVVEGKVPAKQPGLLGGMPAAIWTRVVDLWPWSLALLLPLGWIFAACLGGIAVVDKEEEELRGEGEG--ERPVGDAGEDD 135

[Close]

BLAST of NO02G00410 vs. NCBI_GenBank
Match: NP_001089318.1 (thioredoxin-related transmembrane protein 3 L homeolog precursor [Xenopus laevis] >AAH92019.1 Txndc10b protein [Xenopus laevis])

HSP 1 Score: 142.1 bits (357), Expect = 4.500e-30
Identity = 125/440 (28.41%), Postives = 199/440 (45.23%), Query Frame = 0

Query:   21 VLAPLPSMQAAAGADESGVITLTAANFRENVEDGNTWLVDFYAPWCGHCVKLDPVLDEVVATVRDS---LRIGKVDATVHTKLGKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLALPPALPLPTPEALSSYLRSLPAPGVGFVLGRREGGGKGKQLFSNPPLSPSGFFLAKVEGGKER----GEEPPVYFPVSSXXXXXSSPLSLTDAKTIQQWVRSNNHPLLSPLGGHNFRQLGSLGKLLVIAVVDPNGSPAVTEAYLEMLKDMARLPYLQPYVQRDLVMGWLDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYWAMGGDGGMGSKGMEFVEGEAAMESMGAFLVDVVEGKVPAK-RQGFLGGMPAALW---SRLSDMWPWS--LGLL---LPLGWLIALCLGGGLGNDEE-EEELRRERV 444
            +LA + S    A    S  +     +F+EN +D + WLVDFYAPWCGHC KL+PV ++V   +R S   +R+GK+DATVH+ +  EFGV GFPT+K+L               NY GPRTKE I++ A R+A P   PLP+ +      +  P   V FV    +   K K +     L    +F +  E    +     E P V     S            +   +  WV          + G    +LG  GKL+ +AV+D   +         + +D+A+    + +V RD   G +DG     ++ +  + +  +P+F VL+  +++Y+       + SK +E        E M  F+  +++G   A+   G L  +    +   S +  ++  S  LG     LPLG +  +C G    + E+  EE+ R+ V
Sbjct:    9 ILATVTSTSLLASVPVSAFVEDLDDSFKENRKD-DIWLVDFYAPWCGHCKKLEPVWNDVGIEIRSSGSPIRVGKMDATVHSSIASEFGVRGFPTIKVLKGDM---------AYNYRGPRTKEDIVEFANRVAGPVIRPLPSQQMFDHVQKRHP---VLFVYVGVDSTLKEKFIEVASELIVYTYFFSASEDVLPKYVTLNEVPAVLVFKDSTYFVYDE----YEDGDLSSWVNKERFEGYLHIDGFTLYELGDTGKLVAVAVIDEKNNSIEHTRLKSVAQDVAK--NYRDHVHRDFQFGHMDG---NDYINSLLMDELSIPTFVVLNTSNQQYF-------LPSKQIE------NTEEMIQFINSILDGTAEAQGGDGILQRIKRVFYDAKSTVVSVFKSSPLLGCFLFGLPLGVISIMCYGICTADTEDGSEEMTRKDV 413

[Close]

BLAST of NO02G00410 vs. NCBI_GenBank
Match: OCT76594.1 (hypothetical protein XELAEV_18031797mg [Xenopus laevis])

HSP 1 Score: 142.1 bits (357), Expect = 4.500e-30
Identity = 125/440 (28.41%), Postives = 199/440 (45.23%), Query Frame = 0

Query:   21 VLAPLPSMQAAAGADESGVITLTAANFRENVEDGNTWLVDFYAPWCGHCVKLDPVLDEVVATVRDS---LRIGKVDATVHTKLGKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLALPPALPLPTPEALSSYLRSLPAPGVGFVLGRREGGGKGKQLFSNPPLSPSGFFLAKVEGGKER----GEEPPVYFPVSSXXXXXSSPLSLTDAKTIQQWVRSNNHPLLSPLGGHNFRQLGSLGKLLVIAVVDPNGSPAVTEAYLEMLKDMARLPYLQPYVQRDLVMGWLDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYWAMGGDGGMGSKGMEFVEGEAAMESMGAFLVDVVEGKVPAK-RQGFLGGMPAALW---SRLSDMWPWS--LGLL---LPLGWLIALCLGGGLGNDEE-EEELRRERV 444
            +LA + S    A    S  +     +F+EN +D + WLVDFYAPWCGHC KL+PV ++V   +R S   +R+GK+DATVH+ +  EFGV GFPT+K+L               NY GPRTKE I++ A R+A P   PLP+ +      +  P   V FV    +   K K +     L    +F +  E    +     E P V     S            +   +  WV          + G    +LG  GKL+ +AV+D   +         + +D+A+    + +V RD   G +DG     ++ +  + +  +P+F VL+  +++Y+       + SK +E        E M  F+  +++G   A+   G L  +    +   S +  ++  S  LG     LPLG +  +C G    + E+  EE+ R+ V
Sbjct:   57 ILATVTSTSLLASVPVSAFVEDLDDSFKENRKD-DIWLVDFYAPWCGHCKKLEPVWNDVGIEIRSSGSPIRVGKMDATVHSSIASEFGVRGFPTIKVLKGDM---------AYNYRGPRTKEDIVEFANRVAGPVIRPLPSQQMFDHVQKRHP---VLFVYVGVDSTLKEKFIEVASELIVYTYFFSASEDVLPKYVTLNEVPAVLVFKDSTYFVYDE----YEDGDLSSWVNKERFEGYLHIDGFTLYELGDTGKLVAVAVIDEKNNSIEHTRLKSVAQDVAK--NYRDHVHRDFQFGHMDG---NDYINSLLMDELSIPTFVVLNTSNQQYF-------LPSKQIE------NTEEMIQFINSILDGTAEAQGGDGILQRIKRVFYDAKSTVVSVFKSSPLLGCFLFGLPLGVISIMCYGICTADTEDGSEEMTRKDV 461

[Close]

BLAST of NO02G00410 vs. NCBI_GenBank
Match: XP_002939661.1 (PREDICTED: protein disulfide-isomerase TMX3 [Xenopus tropicalis])

HSP 1 Score: 140.6 bits (353), Expect = 1.300e-29
Identity = 125/440 (28.41%), Postives = 198/440 (45.00%), Query Frame = 0

Query:   21 VLAPLPSMQAAAGADESGVITLTAANFRENVEDGNTWLVDFYAPWCGHCVKLDPVLDEVVATVRDS---LRIGKVDATVHTKLGKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLALPPALPLPTPEALSSYLRSLPAPGVGFVLGRREGGGKGKQLFSNPPLSPSGFFLAKVEGGKER----GEEPPVYFPVSSXXXXXSSPLSLTDAKTIQQWVRSNNHPLLSPLGGHNFRQLGSLGKLLVIAVVDPNGSPAVTEAYLEMLKDMARLPYLQPYVQRDLVMGWLDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYWAMGGDGGMGSKGMEFVEGEAAMESMGAFLVDVVEGKVPAK-RQGFLGGMPAALW---SRLSDMWPWS--LGLL---LPLGWLIALCLGGGLGNDEE-EEELRRERV 444
            +LA + S    A    S ++     +F+EN +D + WLVDFYAPWCGHC KL+PV +EV   +R S   +R+GK+DATVH+ +  EFGV GFPT+K+L               NY GPRTKE I++ A R+A P   PLP+ +      +      V FV    E   K K +     L    +F +  E    +     E P V     S            +   +  WV          + G    +LG  GKL+ +AV+D   +         + +D+A+    + +  RD   G +DG     ++ +  + +  +P+F VL+  +++Y+       + SK +E        E M  F+  +++G   A+   G L  +    +   S +  ++  S  LG     LPLG +  +C G    + E+  EE+ R+ V
Sbjct:    9 ILATVASTSLLASLPVSALVEDLDDSFKENRKD-DIWLVDFYAPWCGHCKKLEPVWNEVGIEMRSSGSPIRVGKMDATVHSSIASEFGVRGFPTIKVLKGDM---------AYNYRGPRTKEDIVEFANRVAGPLIRPLPSQQMFDHVQK---RHSVLFVYVGVESTLKEKYIEVASELIVYTYFFSSSEDVLPKYVTLNEVPAVLVFKDSTYFVYDE----YEDGDLSSWVNKERFEGYLHIDGFTLYELGDTGKLVAVAVIDEKNNSVEHTRLKSIAQDVAK--NYRDHFHRDFQFGHMDG---NDYINSLLMDELSIPTFVVLNTSNQQYF-------LPSKQIE------NTEEMIQFINSILDGTAEAQGGDGILQRIKRVFYDAKSTVVSVFKSSPLLGCFLFGLPLGVISIMCYGICTADTEDGSEEMTRKDV 413

[Close]

BLAST of NO02G00410 vs. NCBI_GenBank
Match: CEO96697.1 (hypothetical protein PBRA_005301 [Plasmodiophora brassicae])

HSP 1 Score: 139.4 bits (350), Expect = 2.900e-29
Identity = 117/383 (30.55%), Postives = 169/383 (44.13%), Query Frame = 0

Query:   18 PLLVLAPLPSMQAAAGADESGVITLTAANFRENVED---GNTWLVDFYAPWCGHCVKLDPVLDEVVATVR--DSLRIGKVDATVHTKLGKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLALPPALPLPTPEALSSYLRSLPAPGVGFVLGRREGGGKGKQLFSNPPLSPSGFFLAKVEG----------GKERGEEPPVYFPVSSXXXXXSSPLSLTDA-KTIQQWVRSNNHPLLSPLGGHNFRQLGSLGKLLVIAVVDPNGSPAVTEAYLEMLKDMARLPYLQPYVQRDLVMGWLDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYWAMGGDGGMGSKGMEFVEGEAAMESMGAFLVDVVEGKV 385
            PLLV   + ++ A A  +   V  LT  NF+  V D   G  W+VDFYAPWCGHC KL+P LD   A +R    ++ GKVD TV   L KE+ + G+PT+K             G+ S Y+  R K+ +++ A  ++ P   PL   +ALSS   S P     FV             +S    SP+     KV              E  + P +   V       S+P+  + A   +  WV  N  P LS LG  NFR+L +    LV+A +DP       + + +M K   +L  +       LV  W+D  RW  +++       + P+  V D+ SER+W    DG +           A  ES+  FL DV + K+
Sbjct:    4 PLLVGVAVAAVVAMAAGE---VAVLTKDNFKPLVLDATSGVGWIVDFYAPWCGHCKKLEPELDAAAAQLRGKTEVKFGKVDCTVEKDLAKEYNIQGYPTIKFFRD---------GSASEYQHGRGKDDLVEFAKTMSKPAVQPL---KALSSSHASDPY----FV-------------YSGDIASPAYKLFTKVARQFQARNLSFFSSESNQHPALMTRVMLGAKDISTPVDPSSALADLVAWVDGNKRPYLSELGLQNFRELVTQPVRLVMAALDP-----TDKGFADMKK---KLHDVAVSHDGQLVFSWIDSTRWNHWLQKQFNIDGKKPAMVVYDYNSERHWP-AKDGTL-----------ATAESITKFLKDVADNKI 334

[Close]

BLAST of NO02G00410 vs. NCBI_GenBank
Match: NP_001085926.1 (protein disulfide-isomerase TMX3 precursor [Xenopus laevis] >Q6GNG3.1 RecName: Full=Protein disulfide-isomerase TMX3; AltName: Full=Thioredoxin domain-containing protein 10; AltName: Full=Thioredoxin-related transmembrane protein 3; Flags: Precursor >AAH73549.1 Txndc10a protein [Xenopus laevis])

HSP 1 Score: 137.1 bits (344), Expect = 1.400e-28
Identity = 136/481 (28.27%), Postives = 215/481 (44.70%), Query Frame = 0

Query:   21 VLAPLPSMQAAAGADESGVITLTAANFRENVEDGNTWLVDFYAPWCGHCVKLDPVLDEVVATVRDS---LRIGKVDATVHTKLGKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLALPPALPLPTPEALSSYLRSLPAPGVGFVLGRREGGGKGKQLFSNPPLSPSGFFLAKVEGGKER----GEEPPVYFPVSSXXXXXSSPLSLTDAKTIQQWVRSNNHPLLSPLGGHNFRQLGSLGKLLVIAVVDPNGSPAVTEAYLEMLKDMARLPYLQPYVQRDLVMGWLDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYWAMGGDGGMGSKGMEFVEGEAAMESMGAFLVDVVEGKVPAK-RQGFLGGMPAALW---SRLSDMWPWS--LGLL---LPLGWLIALCLGGGLGNDEE--EEELRRERVGGVRRVEGKAEQEDETKKTGKVGREEGVLDDKEKDAGAKK 484
            +LA + S    A    S ++     +F+EN +D + WLVDFYAPWCGHC KL+PV +EV   +R S   +R+GK+DATV++ +  EFGV GFPT+K L               NY GPRTKE I++ A R+A P   PLP+ +      +  P   V FV    E   K K +     L    +F +  E    +     E P V     S            +   +  WV          + G    +LG  GKL+ +AV+D   +         + +D+A+    +    RD   G +DG     ++ +  + +  +P+F VL+  +++Y+       + SK +E        E M  F+  +++G   A+   G L  +    +   S +  ++  S  LG     LPLG +  +C G    + E+  EE  R++ +      EG  E+E++ ++   V  E    D +EKD   KK
Sbjct:    9 ILAIVSSTSLLASVPVSALVEDLDDSFKENRKD-DIWLVDFYAPWCGHCKKLEPVWNEVGIEIRTSGSPIRVGKIDATVYSSIASEFGVRGFPTIKALKGDM---------AYNYRGPRTKEDIVEFANRVAGPLIRPLPSQQMFDHVKKRHP---VLFVYVGVESTLKEKFIEVASELIVYTYFFSASEDVLPKYVTLNEVPAVLVFKDSTYFVYDE----YEDGDLSSWVNKERFEGYLHIDGFTLYELGDTGKLVAVAVIDEKNNSIEHTRIKSIAQDVAK--NNRNNFHRDFQFGHMDG---NDYINSLLMDELSIPTFVVLNTSNQQYF-------LPSKHIE------NPEEMIQFINSILDGTAEAQGGDGILQRIKRVFYDAKSTVVSVFKSSPLLGCFLFGLPLGVISIMCYGICTADTEDGSEEMTRKDVIDQNASDEGSDEEEEKGREITDVSDE----DQQEKDFMEKK 450

[Close]

BLAST of NO02G00410 vs. NCBI_GenBank
Match: OCT74579.1 (hypothetical protein XELAEV_18033564mg [Xenopus laevis])

HSP 1 Score: 137.1 bits (344), Expect = 1.400e-28
Identity = 136/481 (28.27%), Postives = 215/481 (44.70%), Query Frame = 0

Query:   21 VLAPLPSMQAAAGADESGVITLTAANFRENVEDGNTWLVDFYAPWCGHCVKLDPVLDEVVATVRDS---LRIGKVDATVHTKLGKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLALPPALPLPTPEALSSYLRSLPAPGVGFVLGRREGGGKGKQLFSNPPLSPSGFFLAKVEGGKER----GEEPPVYFPVSSXXXXXSSPLSLTDAKTIQQWVRSNNHPLLSPLGGHNFRQLGSLGKLLVIAVVDPNGSPAVTEAYLEMLKDMARLPYLQPYVQRDLVMGWLDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYWAMGGDGGMGSKGMEFVEGEAAMESMGAFLVDVVEGKVPAK-RQGFLGGMPAALW---SRLSDMWPWS--LGLL---LPLGWLIALCLGGGLGNDEE--EEELRRERVGGVRRVEGKAEQEDETKKTGKVGREEGVLDDKEKDAGAKK 484
            +LA + S    A    S ++     +F+EN +D + WLVDFYAPWCGHC KL+PV +EV   +R S   +R+GK+DATV++ +  EFGV GFPT+K L               NY GPRTKE I++ A R+A P   PLP+ +      +  P   V FV    E   K K +     L    +F +  E    +     E P V     S            +   +  WV          + G    +LG  GKL+ +AV+D   +         + +D+A+    +    RD   G +DG     ++ +  + +  +P+F VL+  +++Y+       + SK +E        E M  F+  +++G   A+   G L  +    +   S +  ++  S  LG     LPLG +  +C G    + E+  EE  R++ +      EG  E+E++ ++   V  E    D +EKD   KK
Sbjct:    9 ILAIVASTSLLASVPVSALVEDLDDSFKENRKD-DIWLVDFYAPWCGHCKKLEPVWNEVGIEIRTSGSPIRVGKIDATVYSSIASEFGVRGFPTIKALKGDM---------AYNYRGPRTKEDIVEFANRVAGPLIRPLPSQQMFDHVKKRHP---VLFVYVGVESTLKEKFIEVASELIVYTYFFSASEDVLPKYVTLNEVPAVLVFKDSTYFVYDE----YEDGDLSSWVNKERFEGYLHIDGFTLYELGDTGKLVAVAVIDEKNNSIEHTRIKSIAQDVAK--NNRNNFHRDFQFGHMDG---NDYINSLLMDELSIPTFVVLNTSNQQYF-------LPSKHIE------NPEEMIQFINSILDGTAEAQGGDGILQRIKRVFYDAKSTVVSVFKSSPLLGCFLFGLPLGVISIMCYGICTADTEDGSEEMTRKDVIDQNASDEGSDEEEEKGREITDVSDE----DQQEKDFMEKK 450

[Close]

BLAST of NO02G00410 vs. NCBI_GenBank
Match: XP_010706775.1 (PREDICTED: protein disulfide-isomerase TMX3 [Meleagris gallopavo])

HSP 1 Score: 131.0 bits (328), Expect = 1.000e-26
Identity = 95/329 (28.88%), Postives = 156/329 (47.42%), Query Frame = 0

Query:   23 APLPSMQAAAGADESGVITLTAANFRENVEDGNTWLVDFYAPWCGHCVKLDPVLDEV---VATVRDSLRIGKVDATVHTKLGKEFGVSGFPTLKILMPPQKEAGETVGTIS-NYEGPRTKEGIMDLATRLALPPALPLPTPEALSSYLRSLPAPGVGFVLGRREGGGKGKQLFSNPPLSPSGFFLAKVEGGKERGEEPPVYFPVSSXXXXXSSPLSLTDAKTIQQWVRSNNHPLLSPLGGHNFRQLGSLGKLLVIAVVDPNGSPAVTEAYLEMLKDMARLPYLQPYVQRDLVMGWLDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYW 348
            +P P++ A A A E+  +     +F+EN +D + WLVDFYAPWCGHC KL+PV +EV   +  +   +R+GK+DAT  + +  EFGV G+PT+K+L           G ++ NY GPRTK+ I++ A R+A P   PLP+ + +  ++R      V FV    E   K K +     L    +F +  E         P    V              +   +  W+          + G    +LG  GKL+ IAV+D   S         +++++AR    + +  RD   G +DG     ++ +  +    +P+  VL+  +++Y+
Sbjct:   59 SPHPAVVALALASEAAFVEDLDESFKENRKD-DIWLVDFYAPWCGHCKKLEPVWNEVGIEMKNMGSPVRVGKMDATSFSSIASEFGVRGYPTIKLLK----------GDLAYNYRGPRTKDDIIEFANRVAGPLIRPLPS-QHMFEHVRK--RHRVFFVYVGGESPLKEKYIEVASELIVYTYFFSASEDMLPEYLTLPELPAVVVFKDGTYFVYDEYEDGDLSSWINRERFQGYLTVDGFTLYELGDTGKLVAIAVIDDKNSSVEHTRLKSIIQEVAR--DYRDHFHRDFQFGHMDG---NDYINSLLMDDLTIPTIVVLNTSNQQYF 368

[Close]

BLAST of NO02G00410 vs. NCBI_GenBank
Match: XP_006001538.1 (PREDICTED: protein disulfide-isomerase TMX3 isoform X1 [Latimeria chalumnae])

HSP 1 Score: 130.2 bits (326), Expect = 1.800e-26
Identity = 110/407 (27.03%), Postives = 186/407 (45.70%), Query Frame = 0

Query:   46 NFRENVEDGNTWLVDFYAPWCGHCVKLDPVLDEV---VATVRDSLRIGKVDATVHTKLGKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLALPPALPLPTPEALSSYLRSLPAPGVGFVLGRREGGGKGKQLFSNPPLSPSGFFLAKVEGGKERGEEPPVYFPVSSXXXXXSSPLSLTDA---KTIQQWVRSNNHPLLSPLGGHNFRQLGSLGKLLVIAVVDPNGSPAVTEAYLEMLKDMARLPYLQPYVQRDLVMGWLDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYWAMGGDGGMGSKGMEFVEGEAAMESMGAFLVDVVEGKVPAK-RQGFLGGMPAALW---SRLSDMWPWS--LGLL---LPLGWLIALCLGGGLGNDEEEEE 438
            +F+EN +D N WLVDFYAPWCGHC KL+PV +EV   + T    +R+GK+DAT ++ +  EFGV G+PT+K+L               NY GPRTK+ I++ A R++ P   PLP+ +      +  P   V FV    E   K K +     L    +F +  E   E   E      + +          + D      +  WV          + G    +LG  GK++ IAV+D   +         +++++A+    + +  RD   G +DG   + ++ +  + + ++PS  VL+  +++Y+       +  K +E      + + M  FL ++++G   A+   GF   +    +   S +  ++  S  LG     LPLG +  +C G    + +E  E
Sbjct:   30 SFKENRKD-NIWLVDFYAPWCGHCKKLEPVWNEVGMELRTTGSPVRVGKMDATSYSSIASEFGVRGYPTIKLLKGDM---------AYNYRGPRTKDDIIEFANRVSGPIVRPLPSQQMFEHVQKRHP---VLFVYAGGESPLKEKYIEVASELIVYTYFFSASE---EVLPEYVTLHELPAVLVFKDGTYFVYDEYEDGDLSSWVNKERFQGYLNIDGFTLFELGDTGKMVAIAVIDDKNTIEEHIRLKSVIQEIAK--DYREHFSRDFQFGHMDG---SDYINSLIMDEVKVPSVIVLNTSNQQYF-------VPKKDIE------STQDMVQFLNEILDGTADAQGGDGFFQRIKRVAYDAKSTIVSVFKSSPILGCFLFGLPLGVISIMCYGIWTADSDEGSE 402

The following BLAST results are available for this feature:

BLAST of NO02G00410 vs. NCBI_GenBank

BLAST of NO02G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM30622.1	1.000e-50	63.75	disulfide isomerase [Nannochloropsis gaditana]	[more]
EWM30625.1	6.700e-34	56.12	hypothetical protein Naga_100440g4 [Nannochloropsi...	[more]
NP_001089318.1	4.500e-30	28.41	thioredoxin-related transmembrane protein 3 L home...	[more]
OCT76594.1	4.500e-30	28.41	hypothetical protein XELAEV_18031797mg [Xenopus la...	[more]
XP_002939661.1	1.300e-29	28.41	PREDICTED: protein disulfide-isomerase TMX3 [Xenop...	[more]
CEO96697.1	2.900e-29	30.55	hypothetical protein PBRA_005301 [Plasmodiophora b...	[more]
NP_001085926.1	1.400e-28	28.27	protein disulfide-isomerase TMX3 precursor [Xenopu...	[more]
OCT74579.1	1.400e-28	28.27	hypothetical protein XELAEV_18033564mg [Xenopus la...	[more]
XP_010706775.1	1.000e-26	28.88	PREDICTED: protein disulfide-isomerase TMX3 [Melea...	[more]
XP_006001538.1	1.800e-26	27.03	PREDICTED: protein disulfide-isomerase TMX3 isofor...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL016	nonsL016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR000	ngnoR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK006624	NSK006624	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G00410.1	NO02G00410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573508	gene_611	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100440g4	gene47	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G00410.1	NO02G00410.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G00410 ID=NO02G00410|Name=NO02G00410|organism=Nannochloropsis oceanica|type=gene|length=2701bp
ATGCGGCTCTCTCCCTTCTCCTTGCACCATGCCGGCCTTCTCCTCCTTCT
CCCCCTCCTTGTGCTGGCCCCTCTCCCTTCCATGCAGGCTGCTGCTGGGG
CGGACGAGAGCGGCGTTATCACATTGACTGCAGCCAACTTCCGGGAAAAC
GTCGAGGATGGGAACACATGGCTTGTGGATTTTTATGCCCCTTGgtacga
tggaatcattctcctctctcgtcgtttctttcccctcctacggcttatca
acattccttctgccctcctcatacaaccacccaagGTGTGGGCATTGCGT
AAAGCTAGATCCCGTCCTTGATGAGGTCGTTGCCACAGTCAGAGACTCAT
TGCGCATTGGCAAGgtacgtgtgcacgcgtcacttctctccaccctccct
acgtcgcctctctccctcgcaatccctctccttgacaatgaggccgttgg
cacatttttcaaatccagatgaagccaatattatccattagccttcttcc
cctccttcccttctgacacccatcttccatctttcccacccctttccttt
tgtgtagGTCGACGCCACTGTCCACACCAAGCTCGGCAAGGAGTTTGGGG
TCTCCGGCTTCCCGACCCTCAAGATCCTCATGCCGCCCCAAAAGGAGGCA
GGGGAGgtgagaagggaaggagggaaggagggaaggagggaggaacggaa
gacgaggaaggacatgaaatgcgatgcacggattttctcagatacctttc
cctccttccctccttccccccctccctctccctcagACCGTCGGCACGAT
CAGCAACTACGAGGGCCCTCGAACGAAGGAGGGAATCATGGACCTCGCCA
CCCGCCTCGCCCTCCCTCCCGCCCTCCCCCTTCCCACCCCTGAAGCCCTC
TCCTCCTATCTTCGCTCCCTCCCTGCGCCCGGCGTGGGCTTCGTGCTGGG
CCGGAGGGAGGGGGGGgtaagggcaagggggaggaggaggaggagagggc
attcatggcagttgcaagggcaatgaggaccactgcgtcctttggcctgg
tggggaaagaggcgctcgagaagGGGAAAGGGAAGCAGCTCTTCAGgtag
ggagaaaggggatggaggggagggagagatggagggagggatcgggggag
ggatggtttacctgctgctgtagggccatttatcgatctcttcccctccc
tcgccctcccttcctcccctccttcccttcctccttccctatctcctttc
ctccctccttagCAACCCGCCTCTCAGCCCTTCGGGCTTCTTCCTTGCTA
AGGTTGAGGGAGGGAAGGAGAGAGGGGAGGAGCCACCCGTCTACTTCCCT
GTCTCCTCCTCCTCTTCCTCCACCTCCTCCCCACTCTCCCTCACGGACGC
CAAGACGATCCAGCAGTGGGTAAGGAGTAACAATCACCCCCTCCTCTCTC
CCTTGGGAGGACACAACTTCCGGCAGCTTGGCAGCTTGGGCAAGgtaggg
cgggagggagggagggagggaaagagggagggagggagggaggttgcgaa
gacggccatgaaataaaagaagggttcaactgtacatctcacacctaatg
cttcaccattacctccattcctccccagTTGCTAGTCATCGCCGTTGTGG
ACCCTAACGGCTCTCCAGCCGTTACAGAAGCCTACCTCGAAATGCTGAAG
GACATGGCGCGGTTGCCGTACCTTCAGCCATACGTGCAAAGGGACCTGGT
GATGGGCTGGTTGGATGGAGTGAGGTGGGCTGGCTTTGTCAAGgtaggga
gggagggaggggaggagggagggaaggagggagggaggaaaggagggcat
gggcgtgagtgcagctggtgggctggccggatagagtgaggtaggcgggc
tttggcaagacacgtccgttcttccctcgcttgctccttctcacaatatc
ccactcatcctttctcccaccctcccttcctccctccctccctctttagA
ATTTCGGCATCGCCAAGACGGAGCTCCCCTCCTTCTTTGTCCTCGATTTC
CCCTCTGAGAGATACTGGGCCATGGGAGGGGATGGTGGGATGGGGTCTAA
GGGAATGGAGTTTGTTGAAGGGGAGGCGGCGATGGAGTCGATGGGAGCGT
TTTTGGTGGATGTGGTGGAGGGCAAGgtgacaaggggggaaggaagggag
ggaaggagggagggagggagggcgtgggggggagggagggggggggaggg
agggaaaacgggggaacctttcatcccctcctctgggcgtgtatcacccg
ctcatttattttatttaataagccttcactacacctccttctttgtcttc
ttctccttaccttcttccccccctttcctctgccccacacagGTCCCGGC
AAAGAGGCAGGGATTTCTCGGCGGCATGCCAGCAGCACTCTGGAGCCGGT
TGTCTGATATGTGGCCTTGGTCTCTGGGTCTTCTATTGCCGTTAGGCTGG
TTGATTGCCCTCTGCTTAGGAGGTGGGTTGGGGAATGACGAGGAGGAGGA
GGAACTGCGCCGGGAACGAGTTGGGGGGGTGAGGCGGGTGGAGGGTAAGG
CAGAGCAGGAGGATGAGACGAAGAAGACAGGGAAAGTAGGGAGGGAGGAG
GGTGTGTTGGATGATAAAGAGAAGGATGCAGGGGCGAAGAAAAACGAGTA
G

protein sequence of NO02G00410.1

>NO02G00410.1-protein ID=NO02G00410.1-protein|Name=NO02G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MRLSPFSLHHAGLLLLLPLLVLAPLPSMQAAAGADESGVITLTAANFREN
VEDGNTWLVDFYAPWCGHCVKLDPVLDEVVATVRDSLRIGKVDATVHTKL
GKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLAL
PPALPLPTPEALSSYLRSLPAPGVGFVLGRREGGGKGKQLFSNPPLSPSG
FFLAKVEGGKERGEEPPVYFPVSSSSSSTSSPLSLTDAKTIQQWVRSNNH
PLLSPLGGHNFRQLGSLGKLLVIAVVDPNGSPAVTEAYLEMLKDMARLPY
LQPYVQRDLVMGWLDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYWAMG
GDGGMGSKGMEFVEGEAAMESMGAFLVDVVEGKVPAKRQGFLGGMPAALW
SRLSDMWPWSLGLLLPLGWLIALCLGGGLGNDEEEEELRRERVGGVRRVE
GKAEQEDETKKTGKVGREEGVLDDKEKDAGAKKNE*

Synonyms

Publications