NO02G00410.1, NO02G00410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G00410.1
Unique Name	NO02G00410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1458
Alignment location	chr2:144004..146704 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:144004..146704 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO02G00410.1 vs.
Match: EWM30622.1 (disulfide isomerase [Nannochloropsis gaditana])

HSP 1 Score: 213.0 bits (541), Expect = 2.100e-51
Identity = 106/169 (62.72%), Postives = 124/169 (73.37%), Query Frame = 0

Query:   23 APLPSMQAAAGAD--ESGVITLTAANFRENVEDGNTWLVDFYAPWCGHCVKLDPVLDEVVATVRDSLRIGKVDATVHTKLGKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLALPPALPLPTPEALSSYLRSLPAPGVGFVLGR-REGGGKGK 189
            APLP   A   AD     V+TLT  NFRE+VEDGNTWLVDFYAPWCGHCV+L+PVLDEV A V D LRIGKVDAT+HT+L K+FG+SG+P+LKI  PP KE  E  G++SNY+G RT E +  LA RL+ P    LPTPEAL+ +LRSL    VGFVLGR  EGG  G+
Sbjct:   26 APLPLSVAIDHADLTAGNVVTLTQDNFREHVEDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRLSAPALAHLPTPEALAGFLRSLQNASVGFVLGRVGEGGRAGR 194

The following BLAST results are available for this feature:

BLAST of NO02G00410.1 vs.

BLAST of NO02G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30622.1	2.100e-51	62.72	disulfide isomerase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G00410	NO02G00410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00410.1	NO02G00410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00410.1.cds1	NO02G00410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00410.1.cds2	NO02G00410.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00410.1.cds3	NO02G00410.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00410.1.cds4	NO02G00410.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00410.1.cds5	NO02G00410.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00410.1.cds6	NO02G00410.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00410.1.cds7	NO02G00410.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00410.1.cds8	NO02G00410.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00410.1.cds9	NO02G00410.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:144004..146704-
coding sequence from alignment at chr2:144004..146704-

mRNA sequence

>NO02G00410.1 ID=NO02G00410.1|Name=NO02G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGCGGCTCTCTCCCTTCTCCTTGCACCATGCCGGCCTTCTCCTCCTTCT
CCCCCTCCTTGTGCTGGCCCCTCTCCCTTCCATGCAGGCTGCTGCTGGGG
CGGACGAGAGCGGCGTTATCACATTGACTGCAGCCAACTTCCGGGAAAAC
GTCGAGGATGGGAACACATGGCTTGTGGATTTTTATGCCCCTTGGTGTGG
GCATTGCGTAAAGCTAGATCCCGTCCTTGATGAGGTCGTTGCCACAGTCA
GAGACTCATTGCGCATTGGCAAGGTCGACGCCACTGTCCACACCAAGCTC
GGCAAGGAGTTTGGGGTCTCCGGCTTCCCGACCCTCAAGATCCTCATGCC
GCCCCAAAAGGAGGCAGGGGAGACCGTCGGCACGATCAGCAACTACGAGG
GCCCTCGAACGAAGGAGGGAATCATGGACCTCGCCACCCGCCTCGCCCTC
CCTCCCGCCCTCCCCCTTCCCACCCCTGAAGCCCTCTCCTCCTATCTTCG
CTCCCTCCCTGCGCCCGGCGTGGGCTTCGTGCTGGGCCGGAGGGAGGGGG
GGGGGAAAGGGAAGCAGCTCTTCAGCAACCCGCCTCTCAGCCCTTCGGGC
TTCTTCCTTGCTAAGGTTGAGGGAGGGAAGGAGAGAGGGGAGGAGCCACC
CGTCTACTTCCCTGTCTCCTCCTCCTCTTCCTCCACCTCCTCCCCACTCT
CCCTCACGGACGCCAAGACGATCCAGCAGTGGGTAAGGAGTAACAATCAC
CCCCTCCTCTCTCCCTTGGGAGGACACAACTTCCGGCAGCTTGGCAGCTT
GGGCAAGTTGCTAGTCATCGCCGTTGTGGACCCTAACGGCTCTCCAGCCG
TTACAGAAGCCTACCTCGAAATGCTGAAGGACATGGCGCGGTTGCCGTAC
CTTCAGCCATACGTGCAAAGGGACCTGGTGATGGGCTGGTTGGATGGAGT
GAGGTGGGCTGGCTTTGTCAAGAATTTCGGCATCGCCAAGACGGAGCTCC
CCTCCTTCTTTGTCCTCGATTTCCCCTCTGAGAGATACTGGGCCATGGGA
GGGGATGGTGGGATGGGGTCTAAGGGAATGGAGTTTGTTGAAGGGGAGGC
GGCGATGGAGTCGATGGGAGCGTTTTTGGTGGATGTGGTGGAGGGCAAGG
TCCCGGCAAAGAGGCAGGGATTTCTCGGCGGCATGCCAGCAGCACTCTGG
AGCCGGTTGTCTGATATGTGGCCTTGGTCTCTGGGTCTTCTATTGCCGTT
AGGCTGGTTGATTGCCCTCTGCTTAGGAGGTGGGTTGGGGAATGACGAGG
AGGAGGAGGAACTGCGCCGGGAACGAGTTGGGGGGGTGAGGCGGGTGGAG
GGTAAGGCAGAGCAGGAGGATGAGACGAAGAAGACAGGGAAAGTAGGGAG
GGAGGAGGGTGTGTTGGATGATAAAGAGAAGGATGCAGGGGCGAAGAAAA
ACGAGTAG

protein sequence of NO02G00410.1

>NO02G00410.1-protein ID=NO02G00410.1-protein|Name=NO02G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MRLSPFSLHHAGLLLLLPLLVLAPLPSMQAAAGADESGVITLTAANFREN
VEDGNTWLVDFYAPWCGHCVKLDPVLDEVVATVRDSLRIGKVDATVHTKL
GKEFGVSGFPTLKILMPPQKEAGETVGTISNYEGPRTKEGIMDLATRLAL
PPALPLPTPEALSSYLRSLPAPGVGFVLGRREGGGKGKQLFSNPPLSPSG
FFLAKVEGGKERGEEPPVYFPVSSSSSSTSSPLSLTDAKTIQQWVRSNNH
PLLSPLGGHNFRQLGSLGKLLVIAVVDPNGSPAVTEAYLEMLKDMARLPY
LQPYVQRDLVMGWLDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYWAMG
GDGGMGSKGMEFVEGEAAMESMGAFLVDVVEGKVPAKRQGFLGGMPAALW
SRLSDMWPWSLGLLLPLGWLIALCLGGGLGNDEEEEELRRERVGGVRRVE
GKAEQEDETKKTGKVGREEGVLDDKEKDAGAKKNE*

mRNA from alignment at chr2:144004..146704-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G00410.1 ID=NO02G00410.1|Name=NO02G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2701bp|location=Sequence derived from alignment at chr2:144004..146704- (Nannochloropsis oceanica)
ATGCGGCTCTCTCCCTTCTCCTTGCACCATGCCGGCCTTCTCCTCCTTCT
CCCCCTCCTTGTGCTGGCCCCTCTCCCTTCCATGCAGGCTGCTGCTGGGG
CGGACGAGAGCGGCGTTATCACATTGACTGCAGCCAACTTCCGGGAAAAC
GTCGAGGATGGGAACACATGGCTTGTGGATTTTTATGCCCCTTGGTACGA
TGGAATCATTCTCCTCTCTCGTCGTTTCTTTCCCCTCCTACGGCTTATCA
ACATTCCTTCTGCCCTCCTCATACAACCACCCAAGGTGTGGGCATTGCGT
AAAGCTAGATCCCGTCCTTGATGAGGTCGTTGCCACAGTCAGAGACTCAT
TGCGCATTGGCAAGGTACGTGTGCACGCGTCACTTCTCTCCACCCTCCCT
ACGTCGCCTCTCTCCCTCGCAATCCCTCTCCTTGACAATGAGGCCGTTGG
CACATTTTTCAAATCCAGATGAAGCCAATATTATCCATTAGCCTTCTTCC
CCTCCTTCCCTTCTGACACCCATCTTCCATCTTTCCCACCCCTTTCCTTT
TGTGTAGGTCGACGCCACTGTCCACACCAAGCTCGGCAAGGAGTTTGGGG
TCTCCGGCTTCCCGACCCTCAAGATCCTCATGCCGCCCCAAAAGGAGGCA
GGGGAGGTGAGAAGGGAAGGAGGGAAGGAGGGAAGGAGGGAGGAACGGAA
GACGAGGAAGGACATGAAATGCGATGCACGGATTTTCTCAGATACCTTTC
CCTCCTTCCCTCCTTCCCCCCCTCCCTCTCCCTCAGACCGTCGGCACGAT
CAGCAACTACGAGGGCCCTCGAACGAAGGAGGGAATCATGGACCTCGCCA
CCCGCCTCGCCCTCCCTCCCGCCCTCCCCCTTCCCACCCCTGAAGCCCTC
TCCTCCTATCTTCGCTCCCTCCCTGCGCCCGGCGTGGGCTTCGTGCTGGG
CCGGAGGGAGGGGGGGGTAAGGGCAAGGGGGAGGAGGAGGAGGAGAGGGC
ATTCATGGCAGTTGCAAGGGCAATGAGGACCACTGCGTCCTTTGGCCTGG
TGGGGAAAGAGGCGCTCGAGAAGGGGAAAGGGAAGCAGCTCTTCAGGTAG
GGAGAAAGGGGATGGAGGGGAGGGAGAGATGGAGGGAGGGATCGGGGGAG
GGATGGTTTACCTGCTGCTGTAGGGCCATTTATCGATCTCTTCCCCTCCC
TCGCCCTCCCTTCCTCCCCTCCTTCCCTTCCTCCTTCCCTATCTCCTTTC
CTCCCTCCTTAGCAACCCGCCTCTCAGCCCTTCGGGCTTCTTCCTTGCTA
AGGTTGAGGGAGGGAAGGAGAGAGGGGAGGAGCCACCCGTCTACTTCCCT
GTCTCCTCCTCCTCTTCCTCCACCTCCTCCCCACTCTCCCTCACGGACGC
CAAGACGATCCAGCAGTGGGTAAGGAGTAACAATCACCCCCTCCTCTCTC
CCTTGGGAGGACACAACTTCCGGCAGCTTGGCAGCTTGGGCAAGGTAGGG
CGGGAGGGAGGGAGGGAGGGAAAGAGGGAGGGAGGGAGGGAGGTTGCGAA
GACGGCCATGAAATAAAAGAAGGGTTCAACTGTACATCTCACACCTAATG
CTTCACCATTACCTCCATTCCTCCCCAGTTGCTAGTCATCGCCGTTGTGG
ACCCTAACGGCTCTCCAGCCGTTACAGAAGCCTACCTCGAAATGCTGAAG
GACATGGCGCGGTTGCCGTACCTTCAGCCATACGTGCAAAGGGACCTGGT
GATGGGCTGGTTGGATGGAGTGAGGTGGGCTGGCTTTGTCAAGGTAGGGA
GGGAGGGAGGGGAGGAGGGAGGGAAGGAGGGAGGGAGGAAAGGAGGGCAT
GGGCGTGAGTGCAGCTGGTGGGCTGGCCGGATAGAGTGAGGTAGGCGGGC
TTTGGCAAGACACGTCCGTTCTTCCCTCGCTTGCTCCTTCTCACAATATC
CCACTCATCCTTTCTCCCACCCTCCCTTCCTCCCTCCCTCCCTCTTTAGA
ATTTCGGCATCGCCAAGACGGAGCTCCCCTCCTTCTTTGTCCTCGATTTC
CCCTCTGAGAGATACTGGGCCATGGGAGGGGATGGTGGGATGGGGTCTAA
GGGAATGGAGTTTGTTGAAGGGGAGGCGGCGATGGAGTCGATGGGAGCGT
TTTTGGTGGATGTGGTGGAGGGCAAGGTGACAAGGGGGGAAGGAAGGGAG
GGAAGGAGGGAGGGAGGGAGGGCGTGGGGGGGAGGGAGGGGGGGGGAGGG
AGGGAAAACGGGGGAACCTTTCATCCCCTCCTCTGGGCGTGTATCACCCG
CTCATTTATTTTATTTAATAAGCCTTCACTACACCTCCTTCTTTGTCTTC
TTCTCCTTACCTTCTTCCCCCCCTTTCCTCTGCCCCACACAGGTCCCGGC
AAAGAGGCAGGGATTTCTCGGCGGCATGCCAGCAGCACTCTGGAGCCGGT
TGTCTGATATGTGGCCTTGGTCTCTGGGTCTTCTATTGCCGTTAGGCTGG
TTGATTGCCCTCTGCTTAGGAGGTGGGTTGGGGAATGACGAGGAGGAGGA
GGAACTGCGCCGGGAACGAGTTGGGGGGGTGAGGCGGGTGGAGGGTAAGG
CAGAGCAGGAGGATGAGACGAAGAAGACAGGGAAAGTAGGGAGGGAGGAG
GGTGTGTTGGATGATAAAGAGAAGGATGCAGGGGCGAAGAAAAACGAGTA
G

Coding sequence (CDS) from alignment at chr2:144004..146704-

>NO02G00410.1 ID=NO02G00410.1|Name=NO02G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr2:144004..146704- (Nannochloropsis oceanica)
ATGCGGCTCTCTCCCTTCTCCTTGCACCATGCCGGCCTTCTCCTCCTTCT
CCCCCTCCTTGTGCTGGCCCCTCTCCCTTCCATGCAGGCTGCTGCTGGGG
CGGACGAGAGCGGCGTTATCACATTGACTGCAGCCAACTTCCGGGAAAAC
GTCGAGGATGGGAACACATGGCTTGTGGATTTTTATGCCCCTTGGTGTGG
GCATTGCGTAAAGCTAGATCCCGTCCTTGATGAGGTCGTTGCCACAGTCA
GAGACTCATTGCGCATTGGCAAGGTCGACGCCACTGTCCACACCAAGCTC
GGCAAGGAGTTTGGGGTCTCCGGCTTCCCGACCCTCAAGATCCTCATGCC
GCCCCAAAAGGAGGCAGGGGAGACCGTCGGCACGATCAGCAACTACGAGG
GCCCTCGAACGAAGGAGGGAATCATGGACCTCGCCACCCGCCTCGCCCTC
CCTCCCGCCCTCCCCCTTCCCACCCCTGAAGCCCTCTCCTCCTATCTTCG
CTCCCTCCCTGCGCCCGGCGTGGGCTTCGTGCTGGGCCGGAGGGAGGGGG
GGGGGAAAGGGAAGCAGCTCTTCAGCAACCCGCCTCTCAGCCCTTCGGGC
TTCTTCCTTGCTAAGGTTGAGGGAGGGAAGGAGAGAGGGGAGGAGCCACC
CGTCTACTTCCCTGTCTCCTCCTCCTCTTCCTCCACCTCCTCCCCACTCT
CCCTCACGGACGCCAAGACGATCCAGCAGTGGGTAAGGAGTAACAATCAC
CCCCTCCTCTCTCCCTTGGGAGGACACAACTTCCGGCAGCTTGGCAGCTT
GGGCAAGTTGCTAGTCATCGCCGTTGTGGACCCTAACGGCTCTCCAGCCG
TTACAGAAGCCTACCTCGAAATGCTGAAGGACATGGCGCGGTTGCCGTAC
CTTCAGCCATACGTGCAAAGGGACCTGGTGATGGGCTGGTTGGATGGAGT
GAGGTGGGCTGGCTTTGTCAAGAATTTCGGCATCGCCAAGACGGAGCTCC
CCTCCTTCTTTGTCCTCGATTTCCCCTCTGAGAGATACTGGGCCATGGGA
GGGGATGGTGGGATGGGGTCTAAGGGAATGGAGTTTGTTGAAGGGGAGGC
GGCGATGGAGTCGATGGGAGCGTTTTTGGTGGATGTGGTGGAGGGCAAGG
TCCCGGCAAAGAGGCAGGGATTTCTCGGCGGCATGCCAGCAGCACTCTGG
AGCCGGTTGTCTGATATGTGGCCTTGGTCTCTGGGTCTTCTATTGCCGTT
AGGCTGGTTGATTGCCCTCTGCTTAGGAGGTGGGTTGGGGAATGACGAGG
AGGAGGAGGAACTGCGCCGGGAACGAGTTGGGGGGGTGAGGCGGGTGGAG
GGTAAGGCAGAGCAGGAGGATGAGACGAAGAAGACAGGGAAAGTAGGGAG
GGAGGAGGGTGTGTTGGATGATAAAGAGAAGGATGCAGGGGCGAAGAAAA
ACGAGTAG

Synonyms

Publications