NO02G00360, NO02G00360 (gene) Nannochloropsis oceanica

Overview
NameNO02G00360
Unique NameNO02G00360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr2:129033..130448 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna primase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:129033..130448 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G00360 vs. NCBI_GenBank
Match: CBN75167.1 (similar to coiled-coil domain containing 111 [Ectocarpus siliculosus])

HSP 1 Score: 162.9 bits (411), Expect = 2.400e-36
Identity = 226/578 (39.10%), Postives = 274/578 (47.40%), Query Frame = 0
Query:    1 MYEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLGAGVEAA-FLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKI------------------------------------------------------GGPPYVDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQ-------------TFLPPSSCPLCPPSPTPPQ---NPHDWILASLVVPYLPCGHLPSPAFITLPEASTQMFVHKFGTL---------------------------ESVHSNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQY--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECR--SYKGPLHWLPLALVPSAETLESIELDAALADACAREPGRW 471
            MYEIIREG PCR+YFD+EF+R  N GLDGE+++      V   L +  G  V  +  L+LDSST +KFSRH+I HL G +LF  N+HVGRFV  +  ++                                                      G P   D       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              L  D SVYT+NR FR+L S KFGK A  +V + + +             TF   SS  L  P     Q        +  SLVVP  P    P+  F+T+   + Q    +FG+                               H  SS   G  +S   G+R  S         +G  PSP PA+D++++   +  GG  G +R W Y            XXXXXXXXXXXXXXXXXXX         P  P      LT+QV  NRWC  IGRAHKSNH  +  DL RG + Q CHD ECR   Y+     LP+ + P  + LE+ EL+  LA A    P  W
Sbjct:  698 MYEIIREGRPCRMYFDLEFARGPNPGLDGEELVCAWINVVAGKLHQEFGVSVGTSNVLDLDSSTPKKFSRHLIFHLPGDQLFLDNSHVGRFVNSLAAELESWRAPQSPSTPATPPGIGRDDIVPTATAAAAVAVPHCVIRSGGGNAGGGDHLGGTPSSDDFPTSAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERLWVKDGDGRRVLFADVSVYTRNRCFRLLGSSKFGKAACLRVAATNKRTLDHMVWRGRGGGTFARTSSSSLLSPREQKQQLRDVARTLLHDSLVVPVTPRSS-PAELFLTVGGGTGQHRYSRFGSCRKQTGDCSSSQQRQQHGWSTNGTISAERGEHRGSSQDHGSGSSDGDGWRVSS---------QGFGPSPFPAVDSFLR-TLVGQGGTRGELRQWSYTAGQVPPRTVEHXXXXXXXXXXXXXXXXXXXLVSPGSQSAPQPPATVVRKLTHQVANNRWCWNIGRAHKSNHVFLVTDLSRGEVRQHCHDQECRRSGYRSNPVRLPIGVAPLEDDLEAFELELGLAAAMRESPADW 1264          
BLAST of NO02G00360 vs. NCBI_GenBank
Match: XP_007218876.1 (DNA-directed primase/polymerase protein isoform X1 [Prunus persica] >ONI25416.1 hypothetical protein PRUPE_2G301900 [Prunus persica])

HSP 1 Score: 146.7 bits (369), Expect = 1.800e-31
Identity = 122/449 (27.17%), Postives = 174/449 (38.75%), Query Frame = 0
Query:    2 YEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLG-AGVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGGPPYVDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPHDWILASLVVPY-LPCGHLPSPAFITLPEASTQMFV---HKFGTLESVHSNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVP 446
            YE+I+EG PC LYFD+EF++  N G +G++++  L   + E L E     G +   LELDSSTE KFSRH+I+ +E    F+ N+HVG FV  +  +I      DG+                                                                       L VDT+VYT+NR FR+  S K GK +    T       +               Q+  +  +ASL+    + C  L                      FG   S     ++ +GG T +S+ Y          F G+    SP PALDA+++ +  + G V G IR W +                                          + Y + RNR+C RIGR HKSNH +   DLRR   YQ+CHDP+CR Y+ P   +PL ++P
Sbjct:  183 YEVIQEGLPCHLYFDLEFNKRDNAGRNGDEMVDVLISVIFEALLEKYSIQGNQEWILELDSSTEAKFSRHLIIRIE-KTAFKDNSHVGAFVTEICSRISSAKERDGR-----------------------------------------------------FGNFFVRKDSKSSNSASQLFVDTAVYTRNRCFRLALSSKAGKNSVLLPTGRFKAKDM---------------QSEEEMFMASLICNLDVDCEKLXXXXXXXXXXXXXXXXXXVNRNFGKCYSWPQEFAL-NGGTTDASATY----------FLGK----SPFPALDAFIE-SVATVGNVSGKIRSWYWFSEFGH------------------------------------MVYSMSRNRYCERIGRQHKSNHVIYVADLRRAAYYQKCHDPDCRGYRSPSRPIPLDIIP 510          
BLAST of NO02G00360 vs. NCBI_GenBank
Match: XP_020414062.1 (DNA-directed primase/polymerase protein isoform X2 [Prunus persica] >ONI25417.1 hypothetical protein PRUPE_2G301900 [Prunus persica])

HSP 1 Score: 146.7 bits (369), Expect = 1.800e-31
Identity = 122/449 (27.17%), Postives = 174/449 (38.75%), Query Frame = 0
Query:    2 YEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLG-AGVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGGPPYVDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPHDWILASLVVPY-LPCGHLPSPAFITLPEASTQMFV---HKFGTLESVHSNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVP 446
            YE+I+EG PC LYFD+EF++  N G +G++++  L   + E L E     G +   LELDSSTE KFSRH+I+ +E    F+ N+HVG FV  +  +I      DG+                                                                       L VDT+VYT+NR FR+  S K GK +    T       +               Q+  +  +ASL+    + C  L                      FG   S     ++ +GG T +S+ Y          F G+    SP PALDA+++ +  + G V G IR W +                                          + Y + RNR+C RIGR HKSNH +   DLRR   YQ+CHDP+CR Y+ P   +PL ++P
Sbjct:  183 YEVIQEGLPCHLYFDLEFNKRDNAGRNGDEMVDVLISVIFEALLEKYSIQGNQEWILELDSSTEAKFSRHLIIRIE-KTAFKDNSHVGAFVTEICSRISSAKERDGR-----------------------------------------------------FGNFFVRKDSKSSNSASQLFVDTAVYTRNRCFRLALSSKAGKNSVLLPTGRFKAKDM---------------QSEEEMFMASLICNLDVDCEKLXXXXXXXXXXXXXXXXXXVNRNFGKCYSWPQEFAL-NGGTTDASATY----------FLGK----SPFPALDAFIE-SVATVGNVSGKIRSWYWFSEFGH------------------------------------MVYSMSRNRYCERIGRQHKSNHVIYVADLRRAAYYQKCHDPDCRGYRSPSRPIPLDIIP 510          
BLAST of NO02G00360 vs. NCBI_GenBank
Match: XP_021827011.1 (DNA-directed primase/polymerase protein isoform X1 [Prunus avium])

HSP 1 Score: 143.7 bits (361), Expect = 1.500e-30
Identity = 120/448 (26.79%), Postives = 168/448 (37.50%), Query Frame = 0
Query:    2 YEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLG-AGVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGGPPYVDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPHDWILASLVVPY-LPCGHLPSPAFITLPEASTQMFVHKFGTLESVH--SNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVP 446
            YE+I+EG PC LYFD+EF+R  N G +G++++  L   + E L E     G +   LELDSSTE KFSRH+I+ +E    F+ N+H G FV  +  +I     +DG+                                                                       L VDT+VYT+NR FR+  S K GK +    T       +               Q+  +  +ASL+    + C  L                          H        +GG T  S+ Y          F G+    SP PALDA++  +  + G V G IR W +                                          + Y + RNR+C RIGR HKSNH +   DLRR   YQ+CHDP+CR Y+ P   +PL ++P
Sbjct:  183 YEVIQEGLPCHLYFDLEFNRRDNAGRNGDEMVDVLISVIFEALLEKYSIQGNKEWILELDSSTEAKFSRHLIIRIE-KTAFKDNSHAGAFVTEICSRISSAKEMDGR-----------------------------------------------------FGKIFVRKDSKSSNSASQLFVDTAVYTRNRCFRLALSSKAGKNSVLLPTGRFKAKDM---------------QSEEEMFMASLICNLDVDCEKLXXXXXXXXXXXXXXXXXXVNRNFGKCHRWPQEFALNGGTTDVSATY----------FLGK----SPFPALDAFIV-SVATVGNVSGKIRSWYWFSEFGH------------------------------------MVYSMSRNRYCERIGRQHKSNHVIYVADLRRAAYYQKCHDPDCRGYRSPSRPIPLDIIP 510          
BLAST of NO02G00360 vs. NCBI_GenBank
Match: XP_021827012.1 (DNA-directed primase/polymerase protein isoform X2 [Prunus avium])

HSP 1 Score: 143.7 bits (361), Expect = 1.500e-30
Identity = 120/448 (26.79%), Postives = 168/448 (37.50%), Query Frame = 0
Query:    2 YEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLG-AGVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGGPPYVDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPHDWILASLVVPY-LPCGHLPSPAFITLPEASTQMFVHKFGTLESVH--SNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVP 446
            YE+I+EG PC LYFD+EF+R  N G +G++++  L   + E L E     G +   LELDSSTE KFSRH+I+ +E    F+ N+H G FV  +  +I     +DG+                                                                       L VDT+VYT+NR FR+  S K GK +    T       +               Q+  +  +ASL+    + C  L                          H        +GG T  S+ Y          F G+    SP PALDA++  +  + G V G IR W +                                          + Y + RNR+C RIGR HKSNH +   DLRR   YQ+CHDP+CR Y+ P   +PL ++P
Sbjct:  120 YEVIQEGLPCHLYFDLEFNRRDNAGRNGDEMVDVLISVIFEALLEKYSIQGNKEWILELDSSTEAKFSRHLIIRIE-KTAFKDNSHAGAFVTEICSRISSAKEMDGR-----------------------------------------------------FGKIFVRKDSKSSNSASQLFVDTAVYTRNRCFRLALSSKAGKNSVLLPTGRFKAKDM---------------QSEEEMFMASLICNLDVDCEKLXXXXXXXXXXXXXXXXXXVNRNFGKCHRWPQEFALNGGTTDVSATY----------FLGK----SPFPALDAFIV-SVATVGNVSGKIRSWYWFSEFGH------------------------------------MVYSMSRNRYCERIGRQHKSNHVIYVADLRRAAYYQKCHDPDCRGYRSPSRPIPLDIIP 447          
BLAST of NO02G00360 vs. NCBI_GenBank
Match: XP_008234830.1 (PREDICTED: DNA-directed primase/polymerase protein [Prunus mume])

HSP 1 Score: 143.3 bits (360), Expect = 1.900e-30
Identity = 120/449 (26.73%), Postives = 173/449 (38.53%), Query Frame = 0
Query:    2 YEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLG-AGVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGGPPYVDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPHDWILASLVVPY-LPCGHLPSPAFITLPEASTQMFV---HKFGTLESVHSNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVP 446
            YE+I+EG PC LYFD+EF++  N G +G++++  L   + E L E     G +   LELDSSTE KFSRH+I+ ++    F+ N+H G FV  +  +I      DG+                                                                       L VDT+VYT+NR FR+  S K GK +    T       +               Q+  +  +ASL+    + C  L                      FG   S     ++ +GG T +S+ Y          F G+    SP PALDA+++ +  + G V G IR W +                                          + Y + RNR+C RIGR HKSNH +   DLRR   YQ+CHDP+CR Y+ P   +PL ++P
Sbjct:  183 YEVIQEGLPCHLYFDLEFNKRDNAGRNGDEMVDVLISVIFEALLEKYSIQGNKEWILELDSSTEAKFSRHLIIRIK-KTAFKDNSHAGAFVTEICSRISSAKERDGR-----------------------------------------------------FGNFFVRKDSKSSNSASQLFVDTAVYTRNRCFRLALSSKAGKNSVLLPTGRFKAKDM---------------QSEEEMFMASLICNLDVDCEKLXXXXXXXXXXXXXXXXXXINRNFGKCYSWPQEFAL-NGGTTDASATY----------FLGK----SPFPALDAFIE-SVATVGNVSGKIRSWYWFSEFGH------------------------------------MVYSMSRNRYCERIGRQHKSNHVIYVADLRRAAYYQKCHDPDCRGYRSPSRPIPLDIIP 510          
BLAST of NO02G00360 vs. NCBI_GenBank
Match: PON96969.1 (DNA primase, UL52/UL70 type, Herpesviridae [Trema orientalis])

HSP 1 Score: 139.8 bits (351), Expect = 2.200e-29
Identity = 127/457 (27.79%), Postives = 173/457 (37.86%), Query Frame = 0
Query:    2 YEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLG-AGVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGGPPYVDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPH--DWILASLVVPY-LPCGHLPSPAFITLPEASTQMFVHKFGTLESVHSNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEG---------GRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVP 446
            YE+I+EG PC LYFD+EFSR  N   DG++++  L   + E L +     G +   LELDSST+ KFSRH+I+ +     F+ N+H G FV  +  +I      DG+                                                                       L VDT+VY++NR FR+  S K GK +                   L P      +N +  D  +ASL+    + C  L             Q     F T   V+ NS              R  SCP     +G G         G+ SP PALD +++ +  S G V G IR W                                           ++ Y + RNR+C RIGR HKSNH M  VDLRR   YQ+CHDP+CR Y+ PL  +PL ++P
Sbjct:  167 YEVIQEGLPCHLYFDLEFSRRENVDRDGDEMVDLLISVILEALLDKYSIKGNQEWILELDSSTDVKFSRHLIIRIP-KTAFKDNSHAGAFVNEICSRIFSGKEKDGR-----------------------------------------------------FEKLFVKKESNSADSPSQLFVDTAVYSRNRCFRLALSSKAGKNSV------------------LLPTGRYRAKNMYEEDMFMASLICNMDVDCEKLXXXXXXXXXXXXXQ-----FNT--EVNHNSG-------------RRFSCPQELTLDGCGIDASATYFMGK-SPFPALDTFIE-SVASIGNVSGKIRSWYLFSDY------------------------------------GLMVYSMSRNRYCERIGREHKSNHVMYVVDLRRADYYQKCHDPDCRGYRSPLRPVPLDIIP 493          
BLAST of NO02G00360 vs. NCBI_GenBank
Match: PON58210.1 (DNA primase, UL52/UL70 type, Herpesviridae [Parasponia andersonii])

HSP 1 Score: 139.0 bits (349), Expect = 3.700e-29
Identity = 125/455 (27.47%), Postives = 171/455 (37.58%), Query Frame = 0
Query:    2 YEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLG-AGVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGGPPYVDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPHDWILASLVVPY-LPCGHLPSPAFITLPEASTQMFVHKFGTLESVHSNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEG---------GRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVP 446
            YE+I+EG PC LYFD+EFSR  N   DG++++  L   + E L +     G     LELDSST+ KFSRH+I+ +     F+ N+H G FV  +  +I      DG+                                                                       L VDT+VY++NR FR+  S K GK +    T      +   + C              D  +ASL+    + C  L             Q     F T   V+ NS              R  SCP     +G G         G+ SP PALD +++ +  S G V G IR W                                           ++ Y + RNR+C RIGR HKSNH M  VDLRR   YQ+C+DP+CR Y+ PL  +PL ++P
Sbjct:  167 YEVIQEGLPCHLYFDLEFSRRENTDRDGDEMVDLLISVILEALLDKYSIKGNREWILELDSSTDVKFSRHLIIRIP-KTAFKDNSHAGVFVNEIWSRIFSGKEKDGR-----------------------------------------------------FEKLFVKKESNAADSPSQLFVDTAVYSRNRCFRLALSSKAGKNSVLLPTGR----YRVKNMC------------EEDMFMASLICNMDVDCEKLXXXXXXXXXXXXXQ-----FNT--EVNHNSG-------------RCFSCPQELTLDGCGIDASATYFMGK-SPFPALDTFIE-SVASIGNVSGKIRSWYLFSDY------------------------------------GLMVYSMSRNRYCERIGREHKSNHVMYVVDLRRADYYQKCYDPDCRGYRSPLRPVPLDIIP 493          
BLAST of NO02G00360 vs. NCBI_GenBank
Match: XP_015878418.1 (PREDICTED: DNA-directed primase/polymerase protein isoform X1 [Ziziphus jujuba] >XP_015878419.1 PREDICTED: DNA-directed primase/polymerase protein isoform X1 [Ziziphus jujuba] >XP_015878421.1 PREDICTED: DNA-directed primase/polymerase protein isoform X1 [Ziziphus jujuba])

HSP 1 Score: 137.1 bits (344), Expect = 1.400e-28
Identity = 121/465 (26.02%), Postives = 172/465 (36.99%), Query Frame = 0
Query:    2 YEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLG-AGVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGGPPYVDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPHDWILASLVVPYLPCGHLPSPAFITLPEASTQMFVHKFGTLESVHSNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVP----SAETLESIELDAALAD 462
            YE+I+EG PC LYFD+EFS+  N   DG++++  L   + + L +     G     LELDSSTE KFSRH+I+ +     F+ N+H G FV  +  +I                                                                                L VDT+VY++NR FR+  S K GK +    T      +     C              +  +ASL+     C        +                 E  HS    YS     +S+G+ S S  +L          SP PALDA+++    S G V G IR W +                                         ++ Y + RNR+C RIGR HKSN+ +  VDLRR   YQ+CHDP+CR Y+ PL  +PL  +P       T++++E   A  D
Sbjct:  188 YEVIQEGLPCHLYFDLEFSKRENAARDGDEMVDLLISVIFDALLDKYSLQGNHEWILELDSSTEVKFSRHLIIRIP-RTAFKDNSHAGAFVNEICSRI-----------------------------------------------------FIAKKGDERFEKLFIKKDSSSADSPSQLFVDTAVYSRNRCFRVALSSKAGKNSVLLPTGR----YKAKGMC------------EEEMFMASLI-----CNMDADCEKLXXXXXXXXXXXXXXFDTEVNHSFGKHYS-PQEFTSNGFTSASATYLMG-------KSPFPALDAFIE-YVASIGNVAGKIRCWYWFSEY------------------------------------GLMVYSMSRNRYCERIGRQHKSNNVIYVVDLRRAVYYQKCHDPDCRGYRSPLRPIPLDSIPEMHHGGSTIDNLEYQNASED 532          
BLAST of NO02G00360 vs. NCBI_GenBank
Match: XP_015878422.1 (PREDICTED: DNA-directed primase/polymerase protein isoform X2 [Ziziphus jujuba])

HSP 1 Score: 137.1 bits (344), Expect = 1.400e-28
Identity = 121/465 (26.02%), Postives = 172/465 (36.99%), Query Frame = 0
Query:    2 YEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLG-AGVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGGPPYVDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPHDWILASLVVPYLPCGHLPSPAFITLPEASTQMFVHKFGTLESVHSNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVP----SAETLESIELDAALAD 462
            YE+I+EG PC LYFD+EFS+  N   DG++++  L   + + L +     G     LELDSSTE KFSRH+I+ +     F+ N+H G FV  +  +I                                                                                L VDT+VY++NR FR+  S K GK +    T      +     C              +  +ASL+     C        +                 E  HS    YS     +S+G+ S S  +L          SP PALDA+++    S G V G IR W +                                         ++ Y + RNR+C RIGR HKSN+ +  VDLRR   YQ+CHDP+CR Y+ PL  +PL  +P       T++++E   A  D
Sbjct:  183 YEVIQEGLPCHLYFDLEFSKRENAARDGDEMVDLLISVIFDALLDKYSLQGNHEWILELDSSTEVKFSRHLIIRIP-RTAFKDNSHAGAFVNEICSRI-----------------------------------------------------FIAKKGDERFEKLFIKKDSSSADSPSQLFVDTAVYSRNRCFRVALSSKAGKNSVLLPTGR----YKAKGMC------------EEEMFMASLI-----CNMDADCEKLXXXXXXXXXXXXXXFDTEVNHSFGKHYS-PQEFTSNGFTSASATYLMG-------KSPFPALDAFIE-YVASIGNVAGKIRCWYWFSEY------------------------------------GLMVYSMSRNRYCERIGRQHKSNNVIYVVDLRRAVYYQKCHDPDCRGYRSPLRPIPLDSIPEMHHGGSTIDNLEYQNASED 527          
The following BLAST results are available for this feature:
BLAST of NO02G00360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN75167.12.400e-3639.10similar to coiled-coil domain containing 111 [Ecto... [more]
XP_007218876.11.800e-3127.17DNA-directed primase/polymerase protein isoform X1... [more]
XP_020414062.11.800e-3127.17DNA-directed primase/polymerase protein isoform X2... [more]
XP_021827011.11.500e-3026.79DNA-directed primase/polymerase protein isoform X1... [more]
XP_021827012.11.500e-3026.79DNA-directed primase/polymerase protein isoform X2... [more]
XP_008234830.11.900e-3026.73PREDICTED: DNA-directed primase/polymerase protein... [more]
PON96969.12.200e-2927.79DNA primase, UL52/UL70 type, Herpesviridae [Trema ... [more]
PON58210.13.700e-2927.47DNA primase, UL52/UL70 type, Herpesviridae [Parasp... [more]
XP_015878418.11.400e-2826.02PREDICTED: DNA-directed primase/polymerase protein... [more]
XP_015878422.11.400e-2826.02PREDICTED: DNA-directed primase/polymerase protein... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR068ncniR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006615NSK006615Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00360.1NO02G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00360.1NO02G00360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00360 ID=NO02G00360|Name=NO02G00360|organism=Nannochloropsis oceanica|type=gene|length=1416bp
ATGTACGAGATCATCAGGGAGGGCTACCCTTGCCGACTGTACTTTGATGT
GGAGTTCTCGCGTATCGCCAACAGGGGGCTGGATGGAGAGAAAGTGATGC
GCGAGCTGCAGGGGCGGGTCAGGGAGGGCTTGAGGGAGTTGCTTGGGGCA
GGGGTGGAAGCGGCATTTTTAGAGCTGGACAGCTCGACAGAGGAGAAGTT
TAGTCGGCATGTGATTGTACACCTGGAGGGAGGGAGGCTGTTTCGGTCTA
ACGCTCATGTAGGGAGGTTTGTGCAGCGGGTGACGCAGAAGATAGGCGGG
CCACCGTACGTGGACGGGCAGGGAGGTGGGGAGGAGGGGGAGGAAGGCAG
GAAAAAGAGCTTGCTCTGGGTGAGGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAAAAGGAGAAGGGTGTGCAGCAGGAGATGGTAACAGATACAAAG
GAGGTATTGGCAGTGATGCTAGTACAGCAACAGCAGCAGCAAAAACAGCG
GCAGCGGCAGCAGCAGCAGCAACCTCCGTACATCCTTGCAGTCGACACCT
CCGTGTACACCAAAAACCGAGCCTTTCGCATCCTTTATTCCCAAAAGTTC
GGAAAGACGGCCACGTTCCAAGTCACCTCTGAAAGCGCGCAGACTTTCCT
CCCTCCTTCCTCCTGTCCCCTGTGCCCCCCCTCCCCCACCCCTCCTCAAA
ACCCTCACGACTGGATCCTCGCGTCGCTCGTCGTCCCTTACCTCCCTTGC
GGGCACTTACCCTCCCCTGCTTTCATCACCCTCCCCGAAGCCAGTACACA
AATGTTCGTTCATAAATTTGGGACGCTTGAAAGCGTTCACAGCAACAGCA
GCATCTATAGCGGCGGCAACACTAGCAGCAGCAGTGGATACAGGAGTTTA
AGTTGCCCCTTTTTGTTTGCCTTCGAAGGCGAGGGAGGGAGGCCTTCGCC
CTTGCCAGCGCTGGATGCATATGTACAAGGCAACCACATGTCCCACGGCG
GAGTACCTGGCGTTATTCGTGGATGGCAATATTCCTACAGTAGCAGCAAC
AGCAGCAGCAATTGCGGCGGAACCTGTGCAGCCACAGGGACAGCAGATGG
AACGGAGACGACAATGGAGTCCACAACTCCGCCCTTGCCCCTGTTGCCGA
CCAGCATCCTCACCTACCAAGTGGGCCGTAACAGGTGGTGCCATCGCATC
GGGCGCGCGCACAAGAGCAACCACACGATGGTGTCCGTCGACTTGAGGCG
GGGCTGCCTTTATCAAAGGTGCCACGATCCTGAGTGTCGATCGTACAAGG
GCCCGCTGCACTGGCTGCCCCTGGCATTGGTACCCTCGGCGGAGACGCTC
GAGAGCATAGAGCTCGATGCAGCCCTGGCCGATGCCTGTGCCAGGGAACC
AGGAAGGTGGGGTTAA
back to top

protein sequence of NO02G00360.1

>NO02G00360.1-protein ID=NO02G00360.1-protein|Name=NO02G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MYEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLGA
GVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGG
PPYVDGQGGGEEGEEGRKKSLLWVRKEEEEEEEEEEKEKGVQQEMVTDTK
EVLAVMLVQQQQQQKQRQRQQQQQPPYILAVDTSVYTKNRAFRILYSQKF
GKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPHDWILASLVVPYLPC
GHLPSPAFITLPEASTQMFVHKFGTLESVHSNSSIYSGGNTSSSSGYRSL
SCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYSYSSSN
SSSNCGGTCAATGTADGTETTMESTTPPLPLLPTSILTYQVGRNRWCHRI
GRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVPSAETL
ESIELDAALADACAREPGRWG*
back to top
Synonyms
Publications