NO02G00230, NO02G00230 (gene) Nannochloropsis oceanica

Overview
NameNO02G00230
Unique NameNO02G00230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length366
Alignment locationchr2:86201..86566 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:86201..86566 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G00230 vs. NCBI_GenBank
Match: XP_005854574.1 (hypothetical protein NGA_0226100 [Nannochloropsis gaditana CCMP526] >EKU21790.1 hypothetical protein NGA_0226100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 70.9 bits (172), Expect = 1.800e-9
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0 
Query:    1 MRHRLRSFMQTVVLSDGSSIRTPTFLDKNQPRVLLVK 38
            MRHRLR+FMQT+VL+DGSSIRTPTFL KNQPRVLLVK
Sbjct:    1 MRHRLRTFMQTIVLADGSSIRTPTFLSKNQPRVLLVK 37
The following BLAST results are available for this feature:
BLAST of NO02G00230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854574.11.800e-989.19hypothetical protein NGA_0226100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR068ncniR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00230.1NO02G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00230.1NO02G00230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00230 ID=NO02G00230|Name=NO02G00230|organism=Nannochloropsis oceanica|type=gene|length=366bp
ATGCGACATCGTCTCCGCTCCTTCATGCAGACAGTCGTGTTGTCTGACGG
CAGCTCCATCCGTACACCCACTTTCCTCGACAAGAACCAACCGCGGGTGC
TCCTCGTCAAGgtacgtgaaaggcacaggggtgggactccaagaggatgg
gatgtaatgcattgtatatatatatagagagagagccgatgggcatggat
atgcttcctgcgaggctgtcctaatagtagacggccgcgatgtcactgac
accatcgttcccctccacagGTCGATCCCCGCGCTCAGCAAGCGGCGGCA
CAGGCCCGCGCCCAGCAAACACAGCAGAATAAACAGGCGCCTCCGAGCCA
GCCACAGAAGCAATAG
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protein sequence of NO02G00230.1

>NO02G00230.1-protein ID=NO02G00230.1-protein|Name=NO02G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=69bp
MRHRLRSFMQTVVLSDGSSIRTPTFLDKNQPRVLLVKVDPRAQQAAAQAR
AQQTQQNKQAPPSQPQKQ*
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Synonyms
Publications