NO02G00050, NO02G00050 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G00050 vs. NCBI_GenBank
Match: XP_020181319.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X1 [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 110.5 bits (275), Expect = 7.500e-21 Identity = 81/220 (36.82%), Postives = 122/220 (55.45%), Query Frame = 0 Query: 13 RLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFY----LLGSNAPPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 R YL YN + W VL + ALL H+ GV+ +LA A LE++H +GL VS+ Q R FV + I+ +F + +L+++WS E+IRY F+ L GS AP L+WLRYS+F+V+YP G++SEV L+ L +A+ +++C+R+P +W +F+++Y + LLV P P+M YM+ QRKK L SK Sbjct: 6 RAYLAVYNWAVFFGWAQVLYFAVDALLRSGHE--GVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIALQFIKAS----EKYCIRMP--NKWNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKALANSK 215
BLAST of NO02G00050 vs. NCBI_GenBank
Match: BAJ96023.1 (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 109.8 bits (273), Expect = 1.300e-20 Identity = 78/224 (34.82%), Postives = 124/224 (55.36%), Query Frame = 0 Query: 8 GTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 G+ + RLYL+AYN W VL I ALL D H+ GV+ +LA A +E++H +GL V++ Q R F+ + I+ +F + +L+++WS E+IRY F+ L AP +L+WLRYS F++LYP G+ SEV+L+ LP + + +R+ +++P +W +F+++Y V + V P P+M YM+ QRKK L +K Sbjct: 5 GSAVRRLYLSAYNWVVFYGWAQVLYYAITALLGDGHE--GVYAAVERPLQLAQTAAVMEILHGLVGLVRSPVTATLPQIGSRLFLTWGILWSFPETQSHILVSSLVISWSITEIIRYSFFGLKETLGFAPSWLLWLRYSTFMILYPTGIFSEVSLIYIALPYMKVS----ERYFLKMP--NKWNFSFDYFYTCVIAIGVYIPGG-PHMFTYMLAQRKKALSKAK 219
BLAST of NO02G00050 vs. NCBI_GenBank
Match: CDM87134.1 (unnamed protein product [Triticum aestivum]) HSP 1 Score: 109.8 bits (273), Expect = 1.300e-20 Identity = 81/220 (36.82%), Postives = 123/220 (55.91%), Query Frame = 0 Query: 13 RLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFY----LLGSNAPPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 R YL AYN + W VL ++ALL H+ V+ +LA A LE++H +GL VS+ Q R FV + I+ +F + +L+++WS E+IRY F+ L GS AP L+WLRYS+F+V+YP G++SEV L+ L +A+ +++C+R+P +W +F+++Y + LLV P P+M YM+ QRKK L SK Sbjct: 6 RAYLAAYNWAVFFGWAQVLYFAVEALLRSGHE--AVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIALQFIKAS----EKYCIRMP--NKWNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKALAKSK 215
BLAST of NO02G00050 vs. NCBI_GenBank
Match: XP_020181320.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X2 [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 109.8 bits (273), Expect = 1.300e-20 Identity = 81/220 (36.82%), Postives = 122/220 (55.45%), Query Frame = 0 Query: 13 RLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFY----LLGSNAPPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 R YL YN + W VL + ALL H+ GV+ +LA A LE++H +GL VS+ Q R FV + I+ +F + +L+++WS E+IRY F+ L GS AP L+WLRYS+F+V+YP G++SEV L+ L +A+ +++C+R+P +W +F+++Y + LLV P P+M YM+ QRKK L SK Sbjct: 6 RAYLAVYNWAVFFGWAQVLYFAVDALLRSGHE--GVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIALQFIKAS----EKYCIRMP--NKWNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKALAKSK 215
BLAST of NO02G00050 vs. NCBI_GenBank
Match: PIA56160.1 (hypothetical protein AQUCO_00700484v1 [Aquilegia coerulea]) HSP 1 Score: 109.8 bits (273), Expect = 1.300e-20 Identity = 74/222 (33.33%), Postives = 122/222 (54.95%), Query Frame = 0 Query: 11 LVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLG---SNAPPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSKE 229 L R+YL YN + W VL +K L H++ V++ +LA A +E++H +GL VS+ Q R +V + I+ +F + +L+++WS E+IRY F+ L +AP +L+WLRYS F++LYP G+ SEV L+ LP ++ +++C+R+P +W +F+++Y + L + P P+M YM+ QRKK L SK+ Sbjct: 8 LKRIYLTLYNWTVFTGWAQVLYFAVKTLKESGHEH--VYSAVERPLQLAQTAAVMEILHGLIGLVRSPVSATLPQIGSRLYVTWGILWSFPETQTHVLVSSLVISWSITEIIRYSFFGLKEAFGSAPSWLLWLRYSTFLLLYPSGITSEVGLIYTALP----FIKNSEKYCIRMP--NKWNFSFDYFYAAIIALGIYVP-GSPHMYQYMLGQRKKALSKSKK 220
BLAST of NO02G00050 vs. NCBI_GenBank
Match: KQK02730.1 (hypothetical protein BRADI_2g03330v3 [Brachypodium distachyon]) HSP 1 Score: 109.4 bits (272), Expect = 1.700e-20 Identity = 75/220 (34.09%), Postives = 115/220 (52.27%), Query Frame = 0 Query: 11 LVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWRAFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 L RLYL+ YN + WV VL + ALL HD V+ A A+LE++H LG +S Q GR +V + I+ +F + +L+++WS E+IRY F+ + AP +L+WLRYS F+V YP+G+ SEV L+ +P +A+ +++C R+P +W Y ++ L LY PY+ YMV +R+K L +K Sbjct: 35 LRRLYLSVYNWAVCFGWVQVLYNAASALLESRHD--AVYPAVERPLLFAQTTAFLEILHSILGFVRSPISVTLPQISGRLYVTWGILWSFPETHSHILVTSLIISWSITEIIRYSFFGMREAFGFAPSWLLWLRYSTFLVFYPIGLISEVGLIYVAMPSMKAS----EKYCFRMP--NKWNLSFDYRYMSVLLTALYVPGFPYLFRYMVAKREKALSKTK 246
BLAST of NO02G00050 vs. NCBI_GenBank
Match: CUG84612.1 (protein tyrosine phosphatase, putative [Bodo saltans]) HSP 1 Score: 109.4 bits (272), Expect = 1.700e-20 Identity = 78/229 (34.06%), Postives = 118/229 (51.53%), Query Frame = 0 Query: 11 LVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVD-AFNTPTGLAWLPALLLAWSGGELIRYPFYLL----GSNAPPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSKEGNEGE 234 L + YL AYN + W V + IK L+ ++ A ++ A LE++H GL +V + F Q R VL+ V+ T W +++AW+ EL+RY +YL+ G P +L WLRYSAFIVLYP+G+ E+ L++ LP + + + ++LP +W FNF+ F++FGL VLYP M +M+KQR K L + E + E Sbjct: 2 LTKGYLLAYNGTLLAGWTYVALQVIKNRLSG-GSLETLYPLIKKALAVSQSAAVLEILHAATGLVRSAVPTTFIQVMSRLLVLWGAVEIGSKNVTNSWWFTQMVIAWTLSELVRYSYYLIGLVKGKKIPAWLTWLRYSAFIVLYPMGITGEIGCLVKALPH----LLQHGTYSVKLP--NKWNFIFNFHSFILFGLGVLYPPGSYVMYTHMLKQRSKALAKANEDAKNE 223
BLAST of NO02G00050 vs. NCBI_GenBank
Match: XP_024315351.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X2 [Brachypodium distachyon]) HSP 1 Score: 109.4 bits (272), Expect = 1.700e-20 Identity = 75/220 (34.09%), Postives = 115/220 (52.27%), Query Frame = 0 Query: 11 LVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWRAFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 L RLYL+ YN + WV VL + ALL HD V+ A A+LE++H LG +S Q GR +V + I+ +F + +L+++WS E+IRY F+ + AP +L+WLRYS F+V YP+G+ SEV L+ +P +A+ +++C R+P +W Y ++ L LY PY+ YMV +R+K L +K Sbjct: 41 LRRLYLSVYNWAVCFGWVQVLYNAASALLESRHD--AVYPAVERPLLFAQTTAFLEILHSILGFVRSPISVTLPQISGRLYVTWGILWSFPETHSHILVTSLIISWSITEIIRYSFFGMREAFGFAPSWLLWLRYSTFLVFYPIGLISEVGLIYVAMPSMKAS----EKYCFRMP--NKWNLSFDYRYMSVLLTALYVPGFPYLFRYMVAKREKALSKTK 252
BLAST of NO02G00050 vs. NCBI_GenBank
Match: BAJ94583.1 (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 109.0 bits (271), Expect = 2.200e-20 Identity = 78/224 (34.82%), Postives = 123/224 (54.91%), Query Frame = 0 Query: 8 GTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 G+ + RLYL+AYN W VL I ALL D H+ GV+ +LA A +E++H +GL V++ Q R F+ + I+ +F + +L+++WS E+IRY F+ L AP +L+WLRYS F++LYP G+ SEV+L+ LP + +R+ +++P +W +F+++Y V + V P P+M YM+ QRKK L +K Sbjct: 5 GSAVRRLYLSAYNWVVFYGWAQVLYYAITALLGDGHE--GVYAAVERPLQLAQTAAVMEILHGLVGLVRSPVTATLPQIGSRLFLTWGILWSFPETQSHILVSSLVISWSITEIIRYSFFGLKETLGFAPSWLLWLRYSTFMILYPTGIFSEVSLIYIALPYMKV----PERYFLKMP--NKWNFSFDYFYTCVIAIGVYIPGG-PHMFTYMLAQRKKALSKAK 219
BLAST of NO02G00050 vs. NCBI_GenBank
Match: XP_017406603.1 (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like [Vigna angularis] >KOM26532.1 hypothetical protein LR48_Vigan284s001800 [Vigna angularis]) HSP 1 Score: 109.0 bits (271), Expect = 2.200e-20 Identity = 82/225 (36.44%), Postives = 127/225 (56.44%), Query Frame = 0 Query: 11 LVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLG---SNAPPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWRAFNFYYF----LVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSKE 229 L R+YL AYN + G W +VL + +K L H+ ++ A + A LE++H +GL V++ Q R FV + I+ +F + +LL++WS E+IRY F+ L ++P +L+WLRYS FIVLYP G++SEV L+ LP +A+V ++C+R+P +W F+F YF +V G+ V P +I ++ YM+ QRKK L SK+ Sbjct: 8 LRRVYLTAYNFTLFGGWFLVLFTVLKTLKESGHE--NLYIAAEKPFLFSQTAAVLEILHGLVGLVRSPVTATLPQIGSRLFVAWGILWSFPETRTHVLVTSLLISWSITEIIRYAFFCLKEAFGSSPSWLLWLRYSTFIVLYPTGISSEVGLIYIALPFIKASV----KYCIRMP--NKWN-FSFDYFCAAIVVLGIYV--PGSI-HLYSYMLAQRKKALSKSKK 220 The following BLAST results are available for this feature:
BLAST of NO02G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G00050 ID=NO02G00050|Name=NO02G00050|organism=Nannochloropsis oceanica|type=gene|length=2539bpback to top protein sequence of NO02G00050.1 >NO02G00050.1-protein ID=NO02G00050.1-protein|Name=NO02G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=252bpback to top Synonyms
Publications
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