NO02G00050.1, NO02G00050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00050.1
Unique NameNO02G00050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1847
Alignment locationchr2:13251..15789 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:13251..15789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00050.1 vs.
Match: EWM30658.1 (3-hydroxyacyl-dehydratase pasticcino 2a-like protein [Nannochloropsis gaditana])

HSP 1 Score: 322.8 bits (826), Expect = 9.600e-85
Identity = 167/245 (68.16%), Postives = 194/245 (79.18%), Query Frame = 0
Query:   13 RLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSNAPPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPW-AEEWRAFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLG--GSKEGNEGEAACGAVPA---GGSWKSRKAE 252
            R YL++YNL+QTGLW  VL  T+ AL ++VHDY GVW  AGPA KLAV GAWLELVHV LGLAGGSVSSAFWQNFGR+FVLFAIVD+F TP  +AWLPALL+AWS GEL+RYPFYL+GSNAPP LVWLRYSAF++LYP+GMASEVALL  TL EAR AV +ED+FC+RLP     WR  NFYYFL+FGLLVLYPFAIPYM  YM++QR+KRL   G ++     +    +PA     S KSRKA+
Sbjct:   46 RAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGREDAITRMSGAAKLPAEMVSSSKKSRKAD 290          
The following BLAST results are available for this feature:
BLAST of NO02G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30658.19.600e-8568.163-hydroxyacyl-dehydratase pasticcino 2a-like prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00050NO02G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00050.1NO02G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00050.1.cds1NO02G00050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00050.1.cds2NO02G00050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00050.1.cds3NO02G00050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00050.1.cds4NO02G00050.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00050.1 ID=NO02G00050.1|Name=NO02G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp
GTCTCATTGGTACGTCACGGGAAATGACGGATTGGCCTGCTTGGTTATCG
CTCGTGGGGGCTGTCGAAAAAGGTACAATTGTGTTGAAGCCCCCAACTTG
GGGGTGGCAAGGAGAGTAGTGAGGAGGTTGACGAACAAGAGGCCTGCGAG
GCAACACAAACCCTGAGATAGTTTCCATGCATGAGAACTGAACGCGATGT
CCACGGGAATATAATGCTCTGTACGATATAGTGGTGGCCTGCTGTAGCAC
TCGCCATAAGCAGCGTTCCCGGATTGTACACTCTGAAGAAGGAAACAAGT
CAAGTCAAGTTGAGTGTTGGCACGGACTCAACACCCCCAAAGTCAATCTC
AAAGAATACTCAAACATTTATACAAAGCAGGCACCCGAGATGTTGCCAAC
CTTTCAGTAAGCCTGGCCGCTGTGTCTTACCCGCCCAGCTCCCCCAGGGT
CGTGGGCCGGCGCAGGTTGATCGTCAAAGCTACCCCCAGCAGCCCGAGCA
CACAATTCTACATTATTACGCCGTGCTATGGAAACCTTAGATCTCCAACC
ATGCTCGCGCTTGTAAACTCTGCTGACCCTCATCTTCCACCACCACTACC
ATACCAAAGCACACAGACACTCCCTCTTTAGGCCCCGTCCTCCCTCCTCC
TTCCCTAGATGGCAGGAAGCAATAAAAGTGGCACAGGCCTAGTAAGGTTG
TACCTGAACGCTTACAATCTTTCTCAAACTGGTTTATGGGTGATGGTTCT
GGTTTCTACCATTAAAGCCTTGCTGGCGGACGTACACGACTATGTGGGCG
TTTGGACCGAGGCCGGACCTGCGACCAAGCTTGCTGTTGGCGGTGCATGG
CTCGAGCTGGTGCACGTCTTCCTGGGCCTGGCGGGCGGCAGTGTCTCCTC
AGCGTTTTGGCAGAACTTCGGGCGGTCTTTTGTCCTCTTCGCTATTGTGG
ACGCCTTCAACACACCCACGGGCCTGGCGTGGCTTCCGGCGTTGCTGCTG
GCCTGGTCGGGGGGCGAGCTGATTCGGTACCCCTTCTACCTTCTGGGCAG
CAACGCGCCGCCCTTCTTAGTCTGGCTCCGGTATTCAGCCTTCATCGTAC
TGTACCCGCTGGGCATGGCCTCTGAGGTGGCCTTGCTCCTGCGCACACTG
CCCGAGGCCAGGGCAGCCGTGGAGAAGGAGGACAGATTCTGCATGCGTCT
GCCATGGGCTGAGGAGTGGCGAGCCTTCAACTTTTACTACTTTCTGGTGT
TTGGGTTGCTCGTGCTATACCCGTTCGCTATTCCCTACATGTTATTCTAC
ATGGTCAAGCAGCGCAAGAAGCGTCTCGGGGGGAGTAAGGAAGGGAATGA
GGGAGAGGCGGCGTGTGGGGCAGTCCCGGCGGGAGGCAGCTGGAAGAGCC
GGAAGGCCGAATAGGAGGCGCGCCGTGGAGCCCAAGAAAGAAGGGATCCA
CGGAAGCGACGGATAAAGGTAGAAGTGTGAGACAAATGGCAAGGCAGTGA
GGGTGGACAAGGGAGAGAACGCCTTGGAAAAAGGGACCGATATGGGGTCC
GGGGAGGCATAAAGGGGAGCATTGAGAGTAGACGTGGGGAAAAAGGCGGC
ATTGTAGGGAAGAAGATAGCAGAAATAAAGGGGAGGGATGGACGTTGAGA
TGGGAAGAGGATAGATTTGGGAGAAATGCAGCCGTGTCCACTATCACATA
GATAGGGGAGGTGGTGCACTTGCTTGCGTAAGGCAGGCTGCATGGATTCC
ATCTAAAAGCGAGACGGGAAAAGAGAGGCCGCAAAGGGGAGAAGAGGAAG
GCATGCGAATAACAACAAAGCAAATGTAAACGAAATGACGGAATGGT
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protein sequence of NO02G00050.1

>NO02G00050.1-protein ID=NO02G00050.1-protein|Name=NO02G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MAGSNKSGTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWT
EAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAF
NTPTGLAWLPALLLAWSGGELIRYPFYLLGSNAPPFLVWLRYSAFIVLYP
LGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWRAFNFYYFLVFGL
LVLYPFAIPYMLFYMVKQRKKRLGGSKEGNEGEAACGAVPAGGSWKSRKA
E*
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mRNA from alignment at chr2:13251..15789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00050.1 ID=NO02G00050.1|Name=NO02G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2539bp|location=Sequence derived from alignment at chr2:13251..15789- (Nannochloropsis oceanica)
GTCTCATTGGTACGTCACGGGAAATGACGGATTGGCCTGCTTGGTTATCG CTCGTGGGGGCTGTCGAAAAAGGTACAATTGTGTTGAAGCCCCCAACTTG GGGGTGGCAAGGAGAGTAGTGAGGAGGTTGACGAACAAGAGGCCTGCGAG GCAACACAAACCCTGAGATAGTTTCCATGCATGAGAACTGAACGCGATGT CCACGGGAATATAATGCTCTGTACGATATAGTGGTGGCCTGCTGTAGCAC TCGCCATAAGCAGCGTTCCCGGATTGTACACTCTGAAGAAGGAAACAAGT CAAGTCAAGTTGAGTGTTGGCACGGACTCAACACCCCCAAAGTCAATCTC AAAGAATACTCAAACATTTATACAAAGCAGGCACCCGAGATGTTGCCAAC CTTTCAGTAAGCCTGGCCGCTGTGTCTTACCCGCCCAGCTCCCCCAGGGT CGTGGGCCGGCGCAGGTTGATCGTCAAAGCTACCCCCAGCAGCCCGAGCA CACAATTCTACATTATTACGCCGTGCTATGGAAACCTTAGATCTCCAACC ATGCTCGCGCTTGTAAACTCTGCTGACCCTCATCTTCCACCACCACTACC ATACCAAAGCACACAGACACTCCCTCTTTAGGCCCCGTCCTCCCTCCTCC TTCCCTAGATGGCAGGAAGCAATAAAAGTGGCACAGGCCTAGTAAGGTTG TACCTGAACGCTTACAATCTTTCTCAAACTGGTTTATGGGTGATGGTTCT GGTTTCTACCATTAAAGCCTTGCTGGCGGACGTACACGACTATGTGGGCG TTTGGACCGAGGCCGGACCTGCGACCAAGCTTGCTGTTGGTACGTATGTG TCAAGGACAGTGTAGATAGGGAGGGTAAAAGAAAAAATGTGTGCTGCGTA GGTAATTATATGTTGCTCTGGAAAAAAAGTGGAGGACGAGTCAAATAAAA ATGCCACTTGAAACGGGTAGAGGTAAGGAGAGGTGTCATGGGAGAGTTTC GACGACGAACTTGTGATGGTGCCATTCGGTCCTCAAATGCGGTAGGAGTG GACGCCTGGCTTGTGTTCTCCTGCGTGCTCCTTCATAATTTTCTCCTTTT CCCTTCCTCCTTTCAACATCCCCCCCTCCCTCTCCAACATTTCCACTCAC CAAACAGGCGGTGCATGGCTCGAGCTGGTGCACGTCTTCCTGGGCCTGGC GGGCGGCAGTGTCTCCTCAGCGTTTTGGCAGAACTTCGGGCGGTCTTTTG TCCTCTTCGCTATTGTGGACGCCTTCAACACACCCACGGGCCTGGCGTGG CTTCCGGCGTTGCTGCTGGCCTGGTCGGGGGGCGAGCTGATTCGGTAGGG AGGGAGACAGGGAGGGAAAGAGGATGGCTACCCGGGAGAGGGCTAGAGCC GCATTATTTGTCAGTGGTGTATTCGGAAGAGGAGGTGTATTTATTATGTT GTCTCTGTTTCCGGCTCATCTATCTGTATTCTCTTTTATAATCCTCCATG AGTTTTCTCTGGCTCTAAGCCTCTCTCTGGCTCCTCGCTGGCTCTAAGCC TCTCTCGTCTGTGTCCTCCTGTTCCTCCTTCCTCTCCCGCCCCCCTTCCC ATAGGTACCCCTTCTACCTTCTGGGCAGCAACGCGCCGCCCTTCTTAGTC TGGCTCCGGTATTCAGCCTTCATCGTACTGTACCCGCTGGGCATGGCCTC TGAGGTGGCCTTGCTCCTGCGCACACTGCCCGAGGCCAGGGCAGCCGTGG AGAAGGAGGACAGATTCTGCATGCGTCTGCCATGGGCTGAGGAGTGGCGA GCCTTCAACTTTTACTACTTTGTGAGTTTCGTGGTGGACCAAGGAGGGAA GGGGGTGAGGGGGATTACGTTGGCAGGCAAAACCTTACACGCATGCTCCT CCCTTCACCTCCCGTCTCCTTACTCCACTCAACAGCTGGTGTTTGGGTTG CTCGTGCTATACCCGTTCGCTATTCCCTACATGTTATTCTACATGGTCAA GCAGCGCAAGAAGCGTCTCGGGGGGAGTAAGGAAGGGAATGAGGGAGAGG CGGCGTGTGGGGCAGTCCCGGCGGGAGGCAGCTGGAAGAGCCGGAAGGCC GAATAGGAGGCGCGCCGTGGAGCCCAAGAAAGAAGGGATCCACGGAAGCG ACGGATAAAGGTAGAAGTGTGAGACAAATGGCAAGGCAGTGAGGGTGGAC AAGGGAGAGAACGCCTTGGAAAAAGGGACCGATATGGGGTCCGGGGAGGC ATAAAGGGGAGCATTGAGAGTAGACGTGGGGAAAAAGGCGGCATTGTAGG GAAGAAGATAGCAGAAATAAAGGGGAGGGATGGACGTTGAGATGGGAAGA GGATAGATTTGGGAGAAATGCAGCCGTGTCCACTATCACATAGATAGGGG AGGTGGTGCACTTGCTTGCGTAAGGCAGGCTGCATGGATTCCATCTAAAA GCGAGACGGGAAAAGAGAGGCCGCAAAGGGGAGAAGAGGAAGGCATGCGA ATAACAACAAAGCAAATGTAAACGAAATGACGGAATGGT
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Coding sequence (CDS) from alignment at chr2:13251..15789-

>NO02G00050.1 ID=NO02G00050.1|Name=NO02G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at chr2:13251..15789- (Nannochloropsis oceanica)
ATGGCAGGAAGCAATAAAAGTGGCACAGGCCTAGTAAGGTTGTACCTGAA
CGCTTACAATCTTTCTCAAACTGGTTTATGGGTGATGGTTCTGGTTTCTA
CCATTAAAGCCTTGCTGGCGGACGTACACGACTATGTGGGCGTTTGGACC
GAGGCCGGACCTGCGACCAAGCTTGCTGTTGGCGGTGCATGGCTCGAGCT
GGTGCACGTCTTCCTGGGCCTGGCGGGCGGCAGTGTCTCCTCAGCGTTTT
GGCAGAACTTCGGGCGGTCTTTTGTCCTCTTCGCTATTGTGGACGCCTTC
AACACACCCACGGGCCTGGCGTGGCTTCCGGCGTTGCTGCTGGCCTGGTC
GGGGGGCGAGCTGATTCGGTACCCCTTCTACCTTCTGGGCAGCAACGCGC
CGCCCTTCTTAGTCTGGCTCCGGTATTCAGCCTTCATCGTACTGTACCCG
CTGGGCATGGCCTCTGAGGTGGCCTTGCTCCTGCGCACACTGCCCGAGGC
CAGGGCAGCCGTGGAGAAGGAGGACAGATTCTGCATGCGTCTGCCATGGG
CTGAGGAGTGGCGAGCCTTCAACTTTTACTACTTTCTGGTGTTTGGGTTG
CTCGTGCTATACCCGTTCGCTATTCCCTACATGTTATTCTACATGGTCAA
GCAGCGCAAGAAGCGTCTCGGGGGGAGTAAGGAAGGGAATGAGGGAGAGG
CGGCGTGTGGGGCAGTCCCGGCGGGAGGCAGCTGGAAGAGCCGGAAGGCC
GAATAG
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Synonyms
Publications