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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:13251..15789 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00050.1 vs.
Match: EWM30658.1 (3-hydroxyacyl-dehydratase pasticcino 2a-like protein [Nannochloropsis gaditana]) HSP 1 Score: 322.8 bits (826), Expect = 9.600e-85 Identity = 167/245 (68.16%), Postives = 194/245 (79.18%), Query Frame = 0
Query: 13 RLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSNAPPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPW-AEEWRAFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLG--GSKEGNEGEAACGAVPA---GGSWKSRKAE 252
R YL++YNL+QTGLW VL T+ AL ++VHDY GVW AGPA KLAV GAWLELVHV LGLAGGSVSSAFWQNFGR+FVLFAIVD+F TP +AWLPALL+AWS GEL+RYPFYL+GSNAPP LVWLRYSAF++LYP+GMASEVALL TL EAR AV +ED+FC+RLP WR NFYYFL+FGLLVLYPFAIPYM YM++QR+KRL G ++ + +PA S KSRKA+
Sbjct: 46 RAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGREDAITRMSGAAKLPAEMVSSSKKSRKAD 290
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00050.1 ID=NO02G00050.1|Name=NO02G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp GTCTCATTGGTACGTCACGGGAAATGACGGATTGGCCTGCTTGGTTATCG CTCGTGGGGGCTGTCGAAAAAGGTACAATTGTGTTGAAGCCCCCAACTTG GGGGTGGCAAGGAGAGTAGTGAGGAGGTTGACGAACAAGAGGCCTGCGAG GCAACACAAACCCTGAGATAGTTTCCATGCATGAGAACTGAACGCGATGT CCACGGGAATATAATGCTCTGTACGATATAGTGGTGGCCTGCTGTAGCAC TCGCCATAAGCAGCGTTCCCGGATTGTACACTCTGAAGAAGGAAACAAGT CAAGTCAAGTTGAGTGTTGGCACGGACTCAACACCCCCAAAGTCAATCTC AAAGAATACTCAAACATTTATACAAAGCAGGCACCCGAGATGTTGCCAAC CTTTCAGTAAGCCTGGCCGCTGTGTCTTACCCGCCCAGCTCCCCCAGGGT CGTGGGCCGGCGCAGGTTGATCGTCAAAGCTACCCCCAGCAGCCCGAGCA CACAATTCTACATTATTACGCCGTGCTATGGAAACCTTAGATCTCCAACC ATGCTCGCGCTTGTAAACTCTGCTGACCCTCATCTTCCACCACCACTACC ATACCAAAGCACACAGACACTCCCTCTTTAGGCCCCGTCCTCCCTCCTCC TTCCCTAGATGGCAGGAAGCAATAAAAGTGGCACAGGCCTAGTAAGGTTG TACCTGAACGCTTACAATCTTTCTCAAACTGGTTTATGGGTGATGGTTCT GGTTTCTACCATTAAAGCCTTGCTGGCGGACGTACACGACTATGTGGGCG TTTGGACCGAGGCCGGACCTGCGACCAAGCTTGCTGTTGGCGGTGCATGG CTCGAGCTGGTGCACGTCTTCCTGGGCCTGGCGGGCGGCAGTGTCTCCTC AGCGTTTTGGCAGAACTTCGGGCGGTCTTTTGTCCTCTTCGCTATTGTGG ACGCCTTCAACACACCCACGGGCCTGGCGTGGCTTCCGGCGTTGCTGCTG GCCTGGTCGGGGGGCGAGCTGATTCGGTACCCCTTCTACCTTCTGGGCAG CAACGCGCCGCCCTTCTTAGTCTGGCTCCGGTATTCAGCCTTCATCGTAC TGTACCCGCTGGGCATGGCCTCTGAGGTGGCCTTGCTCCTGCGCACACTG CCCGAGGCCAGGGCAGCCGTGGAGAAGGAGGACAGATTCTGCATGCGTCT GCCATGGGCTGAGGAGTGGCGAGCCTTCAACTTTTACTACTTTCTGGTGT TTGGGTTGCTCGTGCTATACCCGTTCGCTATTCCCTACATGTTATTCTAC ATGGTCAAGCAGCGCAAGAAGCGTCTCGGGGGGAGTAAGGAAGGGAATGA GGGAGAGGCGGCGTGTGGGGCAGTCCCGGCGGGAGGCAGCTGGAAGAGCC GGAAGGCCGAATAGGAGGCGCGCCGTGGAGCCCAAGAAAGAAGGGATCCA CGGAAGCGACGGATAAAGGTAGAAGTGTGAGACAAATGGCAAGGCAGTGA GGGTGGACAAGGGAGAGAACGCCTTGGAAAAAGGGACCGATATGGGGTCC GGGGAGGCATAAAGGGGAGCATTGAGAGTAGACGTGGGGAAAAAGGCGGC ATTGTAGGGAAGAAGATAGCAGAAATAAAGGGGAGGGATGGACGTTGAGA TGGGAAGAGGATAGATTTGGGAGAAATGCAGCCGTGTCCACTATCACATA GATAGGGGAGGTGGTGCACTTGCTTGCGTAAGGCAGGCTGCATGGATTCC ATCTAAAAGCGAGACGGGAAAAGAGAGGCCGCAAAGGGGAGAAGAGGAAG GCATGCGAATAACAACAAAGCAAATGTAAACGAAATGACGGAATGGT back to topprotein sequence of NO02G00050.1 >NO02G00050.1-protein ID=NO02G00050.1-protein|Name=NO02G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp MAGSNKSGTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWT EAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAF NTPTGLAWLPALLLAWSGGELIRYPFYLLGSNAPPFLVWLRYSAFIVLYP LGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWRAFNFYYFLVFGL LVLYPFAIPYMLFYMVKQRKKRLGGSKEGNEGEAACGAVPAGGSWKSRKA E* back to topmRNA from alignment at chr2:13251..15789- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00050.1 ID=NO02G00050.1|Name=NO02G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2539bp|location=Sequence derived from alignment at chr2:13251..15789- (Nannochloropsis oceanica) GTCTCATTGGTACGTCACGGGAAATGACGGATTGGCCTGCTTGGTTATCG
CTCGTGGGGGCTGTCGAAAAAGGTACAATTGTGTTGAAGCCCCCAACTTG
GGGGTGGCAAGGAGAGTAGTGAGGAGGTTGACGAACAAGAGGCCTGCGAG
GCAACACAAACCCTGAGATAGTTTCCATGCATGAGAACTGAACGCGATGT
CCACGGGAATATAATGCTCTGTACGATATAGTGGTGGCCTGCTGTAGCAC
TCGCCATAAGCAGCGTTCCCGGATTGTACACTCTGAAGAAGGAAACAAGT
CAAGTCAAGTTGAGTGTTGGCACGGACTCAACACCCCCAAAGTCAATCTC
AAAGAATACTCAAACATTTATACAAAGCAGGCACCCGAGATGTTGCCAAC
CTTTCAGTAAGCCTGGCCGCTGTGTCTTACCCGCCCAGCTCCCCCAGGGT
CGTGGGCCGGCGCAGGTTGATCGTCAAAGCTACCCCCAGCAGCCCGAGCA
CACAATTCTACATTATTACGCCGTGCTATGGAAACCTTAGATCTCCAACC
ATGCTCGCGCTTGTAAACTCTGCTGACCCTCATCTTCCACCACCACTACC
ATACCAAAGCACACAGACACTCCCTCTTTAGGCCCCGTCCTCCCTCCTCC
TTCCCTAGATGGCAGGAAGCAATAAAAGTGGCACAGGCCTAGTAAGGTTG
TACCTGAACGCTTACAATCTTTCTCAAACTGGTTTATGGGTGATGGTTCT
GGTTTCTACCATTAAAGCCTTGCTGGCGGACGTACACGACTATGTGGGCG
TTTGGACCGAGGCCGGACCTGCGACCAAGCTTGCTGTTGGTACGTATGTG
TCAAGGACAGTGTAGATAGGGAGGGTAAAAGAAAAAATGTGTGCTGCGTA
GGTAATTATATGTTGCTCTGGAAAAAAAGTGGAGGACGAGTCAAATAAAA
ATGCCACTTGAAACGGGTAGAGGTAAGGAGAGGTGTCATGGGAGAGTTTC
GACGACGAACTTGTGATGGTGCCATTCGGTCCTCAAATGCGGTAGGAGTG
GACGCCTGGCTTGTGTTCTCCTGCGTGCTCCTTCATAATTTTCTCCTTTT
CCCTTCCTCCTTTCAACATCCCCCCCTCCCTCTCCAACATTTCCACTCAC
CAAACAGGCGGTGCATGGCTCGAGCTGGTGCACGTCTTCCTGGGCCTGGC
GGGCGGCAGTGTCTCCTCAGCGTTTTGGCAGAACTTCGGGCGGTCTTTTG
TCCTCTTCGCTATTGTGGACGCCTTCAACACACCCACGGGCCTGGCGTGG
CTTCCGGCGTTGCTGCTGGCCTGGTCGGGGGGCGAGCTGATTCGGTAGGG
AGGGAGACAGGGAGGGAAAGAGGATGGCTACCCGGGAGAGGGCTAGAGCC
GCATTATTTGTCAGTGGTGTATTCGGAAGAGGAGGTGTATTTATTATGTT
GTCTCTGTTTCCGGCTCATCTATCTGTATTCTCTTTTATAATCCTCCATG
AGTTTTCTCTGGCTCTAAGCCTCTCTCTGGCTCCTCGCTGGCTCTAAGCC
TCTCTCGTCTGTGTCCTCCTGTTCCTCCTTCCTCTCCCGCCCCCCTTCCC
ATAGGTACCCCTTCTACCTTCTGGGCAGCAACGCGCCGCCCTTCTTAGTC
TGGCTCCGGTATTCAGCCTTCATCGTACTGTACCCGCTGGGCATGGCCTC
TGAGGTGGCCTTGCTCCTGCGCACACTGCCCGAGGCCAGGGCAGCCGTGG
AGAAGGAGGACAGATTCTGCATGCGTCTGCCATGGGCTGAGGAGTGGCGA
GCCTTCAACTTTTACTACTTTGTGAGTTTCGTGGTGGACCAAGGAGGGAA
GGGGGTGAGGGGGATTACGTTGGCAGGCAAAACCTTACACGCATGCTCCT
CCCTTCACCTCCCGTCTCCTTACTCCACTCAACAGCTGGTGTTTGGGTTG
CTCGTGCTATACCCGTTCGCTATTCCCTACATGTTATTCTACATGGTCAA
GCAGCGCAAGAAGCGTCTCGGGGGGAGTAAGGAAGGGAATGAGGGAGAGG
CGGCGTGTGGGGCAGTCCCGGCGGGAGGCAGCTGGAAGAGCCGGAAGGCC
GAATAGGAGGCGCGCCGTGGAGCCCAAGAAAGAAGGGATCCACGGAAGCG
ACGGATAAAGGTAGAAGTGTGAGACAAATGGCAAGGCAGTGAGGGTGGAC
AAGGGAGAGAACGCCTTGGAAAAAGGGACCGATATGGGGTCCGGGGAGGC
ATAAAGGGGAGCATTGAGAGTAGACGTGGGGAAAAAGGCGGCATTGTAGG
GAAGAAGATAGCAGAAATAAAGGGGAGGGATGGACGTTGAGATGGGAAGA
GGATAGATTTGGGAGAAATGCAGCCGTGTCCACTATCACATAGATAGGGG
AGGTGGTGCACTTGCTTGCGTAAGGCAGGCTGCATGGATTCCATCTAAAA
GCGAGACGGGAAAAGAGAGGCCGCAAAGGGGAGAAGAGGAAGGCATGCGA
ATAACAACAAAGCAAATGTAAACGAAATGACGGAATGGT back to topCoding sequence (CDS) from alignment at chr2:13251..15789- >NO02G00050.1 ID=NO02G00050.1|Name=NO02G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at chr2:13251..15789- (Nannochloropsis oceanica) ATGGCAGGAAGCAATAAAAGTGGCACAGGCCTAGTAAGGTTGTACCTGAA CGCTTACAATCTTTCTCAAACTGGTTTATGGGTGATGGTTCTGGTTTCTA CCATTAAAGCCTTGCTGGCGGACGTACACGACTATGTGGGCGTTTGGACC GAGGCCGGACCTGCGACCAAGCTTGCTGTTGGCGGTGCATGGCTCGAGCT GGTGCACGTCTTCCTGGGCCTGGCGGGCGGCAGTGTCTCCTCAGCGTTTT GGCAGAACTTCGGGCGGTCTTTTGTCCTCTTCGCTATTGTGGACGCCTTC AACACACCCACGGGCCTGGCGTGGCTTCCGGCGTTGCTGCTGGCCTGGTC GGGGGGCGAGCTGATTCGGTACCCCTTCTACCTTCTGGGCAGCAACGCGC CGCCCTTCTTAGTCTGGCTCCGGTATTCAGCCTTCATCGTACTGTACCCG CTGGGCATGGCCTCTGAGGTGGCCTTGCTCCTGCGCACACTGCCCGAGGC CAGGGCAGCCGTGGAGAAGGAGGACAGATTCTGCATGCGTCTGCCATGGG CTGAGGAGTGGCGAGCCTTCAACTTTTACTACTTTCTGGTGTTTGGGTTG CTCGTGCTATACCCGTTCGCTATTCCCTACATGTTATTCTACATGGTCAA GCAGCGCAAGAAGCGTCTCGGGGGGAGTAAGGAAGGGAATGAGGGAGAGG CGGCGTGTGGGGCAGTCCCGGCGGGAGGCAGCTGGAAGAGCCGGAAGGCC GAATAG back to top
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