NO01G05600, NO01G05600 (gene) Nannochloropsis oceanica

Overview
NameNO01G05600
Unique NameNO01G05600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1016
Alignment locationchr1:1557402..1558417 -

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Properties
Property NameValue
DescriptionVesicle transport protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1557402..1558417 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: INTERPRO
TermDefinition
IPR011691Vesicle_transpt_SFT2
IPR007305Vesicle_transpt_Got1/SFT2
Homology
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_004251550.1 (PREDICTED: protein transport protein SFT2 [Solanum lycopersicum])

HSP 1 Score: 108.2 bits (269), Expect = 3.700e-20
Identity = 76/213 (35.68%), Postives = 110/213 (51.64%), Query Frame = 0
Query:   28 DWYAQYAQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGC 241
            DW A YA  Q  G++ D+   L   V           A+D+VSG        ++      PG    A + V +    G  L  F   L  GV F  +AF + LP +V  P KFA+C TIG    +GSF  L GPK  L  +   ERLPFTA +IGS++ T+Y S+++ SY+L +L +V+Q+ A  +Y++++ PGG AG+R L   +      C
Sbjct:   27 DWNA-YASTQDEGSSSDLGFDLEAAVR---------TANDKVSGTFNVVTKGVK----NLPGSFQSATSNVPS----GKSLMYFGLFLAAGVFFIFIAFTMFLPVMVLMPQKFAICFTIGCAFIIGSFFALKGPKNQLTHMTSKERLPFTALFIGSMVGTIYVSMVLHSYILSVLFSVIQVLALSYYVISYFPGGSAGMRFLSSTLTSSIFRC 221          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: PHT73284.1 (hypothetical protein T459_24069 [Capsicum annuum])

HSP 1 Score: 107.8 bits (268), Expect = 4.900e-20
Identity = 73/213 (34.27%), Postives = 109/213 (51.17%), Query Frame = 0
Query:   28 DWYAQYAQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGC 241
            DW A  A +   G++ D+   L   V           A+D+VSG        ++    G PG    A + V +    G  L  F   L  GV F  +AF + LP +V  P KFA+C TIG    +GSF  L GPK  L  +   ERLPFT  +IGS++ T+Y S+++ SY+L +L +V+Q+ A  +Y++++ PGG AG++ L   +      C
Sbjct:   27 DWNAYAADQDNQGSSSDLGFDLEAAVR---------TANDKVSGTFNVVSKGVK----GLPGSFQSATSNVPS----GKSLMYFGLFLAAGVFFIFIAFTMFLPVMVLMPQKFAICFTIGCAFIIGSFFALKGPKNQLTHMTSKERLPFTGVFIGSMVGTVYVSMVLHSYILSVLFSVIQVFALSYYVISYFPGGSAGMKFLSSTLTSSILRC 222          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: PHU07908.1 (hypothetical protein BC332_24397 [Capsicum chinense])

HSP 1 Score: 107.8 bits (268), Expect = 4.900e-20
Identity = 73/213 (34.27%), Postives = 109/213 (51.17%), Query Frame = 0
Query:   28 DWYAQYAQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGC 241
            DW A  A +   G++ D+   L   V           A+D+VSG        ++    G PG    A + V +    G  L  F   L  GV F  +AF + LP +V  P KFA+C TIG    +GSF  L GPK  L  +   ERLPFT  +IGS++ T+Y S+++ SY+L +L +V+Q+ A  +Y++++ PGG AG++ L   +      C
Sbjct:   27 DWNAYAADQDNQGSSSDLGFDLEAAVR---------TANDKVSGTFNVVSKGVK----GLPGSFQSATSNVPS----GRSLMYFGLFLAAGVFFIFIAFTMFLPVMVLMPQKFAICFTIGCAFIIGSFFALKGPKNQLTHMTSKERLPFTGVFIGSMVGTVYVSMVLHSYILSVLFSVIQVFALSYYVISYFPGGSAGMKFLSSTLTSSILRC 222          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_021885683.1 (Got1/Sft2-like family-domain-containing protein [Lobosporangium transversale] >ORZ27980.1 Got1/Sft2-like family-domain-containing protein [Lobosporangium transversale])

HSP 1 Score: 107.1 bits (266), Expect = 8.300e-20
Identity = 64/168 (38.10%), Postives = 100/168 (59.52%), Query Frame = 0
Query:   63 GDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVE--TTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRV 229
            G   +QVSG+               P  +GG     E    L++  R+ GF   +  GV  +++AFFVGLP ++ +P+KFA   T+GS+  M SF++L GP  H ++L+  ERLPFT AY+GS+IF LY+SL++ SY+L I+ TV++I A ++Y  ++ P     +R+
Sbjct:   46 GGVRNQVSGYV--------------PVSLGGTPQQEEDWLGLSWFQRMAGFAICVAGGVACFMIAFFVGLPLLLLKPSKFATSFTLGSILLMCSFALLKGPATHFKALISRERLPFTGAYVGSMIFVLYSSLVLNSYILTIIGTVIEILALLYYFTSYSPFSSGSIRL 199          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_015059756.1 (PREDICTED: protein transport protein SFT2-like [Solanum pennellii])

HSP 1 Score: 106.3 bits (264), Expect = 1.400e-19
Identity = 76/213 (35.68%), Postives = 109/213 (51.17%), Query Frame = 0
Query:   28 DWYAQYAQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGC 241
            DW A YA  Q  G++ D+   L   V           A+D+VSG        ++      PG    A + V +    G  L  F   L  GV F  +AF + LP +V  P KFA+C TIG    +GSF  L GPK  L  +   ERLPFTA  IGS++ T+Y S+++ SY+L +L +V+Q+ A  +Y++++ PGG AG+R L   +      C
Sbjct:   27 DWNA-YASTQDEGSSSDLGFDLEAAVR---------TANDKVSGTFNVVTKGVK----NLPGSFQSATSNVPS----GKSLMYFGLFLAAGVFFIFIAFTMFLPVMVLMPQKFAICFTIGCAFIIGSFFALKGPKNQLTHMTSKERLPFTALSIGSMVGTIYVSMVLHSYILSVLFSVIQVLALSYYVISYFPGGSAGMRFLSSTLTSSIFRC 221          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: OAQ23196.1 (SFT2-domain-containing protein [Mortierella elongata AG-77])

HSP 1 Score: 105.5 bits (262), Expect = 2.400e-19
Identity = 69/178 (38.76%), Postives = 107/178 (60.11%), Query Frame = 0
Query:   61 GMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVE--TTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKG 237
            G G A ++ S + G   + + G    + G  GGA+   E    L +  R+ GF   +  G+  +++AFFVGLP +V +P+KFA   T+GS+  M SF++L GP AHL++L   ERLPFT AY+GS+IF L++SL + +Y L I+ TV++I A ++Y  ++ P     +R LG  +  G
Sbjct:   33 GSGSAFNRASDWFGGVRSQVSGYVPISMG--GGAQPQEEDWLGLTWFQRMAGFAICVAGGLACFMIAFFVGLPLLVIKPSKFATSFTLGSILFMASFALLKGPVAHLKALFSRERLPFTGAYLGSMIFVLFSSLYLNNYFLTIIGTVIEIFALLYYFTSYSPFSGGSIR-LGSRMASG 207          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_019194703.1 (PREDICTED: protein transport protein SFT2-like [Ipomoea nil])

HSP 1 Score: 105.5 bits (262), Expect = 2.400e-19
Identity = 78/213 (36.62%), Postives = 108/213 (50.70%), Query Frame = 0
Query:   28 DWYAQYAQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGC 241
            DW A       A A DD     LG    F     +  A+D V+G  G     +R      PG    A +TV +    G  L  F   L  GV F  +AF + LP +V  P KFA+C TIG    +GSF  L GPK  L  +L  ERLPFTA +IGS++ T+Y S+++ SY+L +L +VVQ+ A  +Y +++ PGG  G++ L   +      C
Sbjct:   27 DWNA------YAAAKDDEASSSLG----FDLEAAVRTANDTVTGTFGVVSKGVR----DLPGNFQSATSTVPS----GKALMYFGLFLSAGVFFIFIAFTMFLPVMVIMPQKFAICFTIGCAFIIGSFFALKGPKNQLSHMLSKERLPFTAVFIGSMVGTVYVSMVMHSYILCVLFSVVQVLALAYYAISYFPGGSTGMKFLSSTLASSILRC 221          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: KZT05222.1 (SFT2-domain-containing protein [Laetiporus sulphureus 93-53])

HSP 1 Score: 104.4 bits (259), Expect = 5.400e-19
Identity = 77/199 (38.69%), Postives = 106/199 (53.27%), Query Frame = 0
Query:   42 NDDVEMGLLGNVERFFHGHGMGDAHDQVSGF-AGRFITSIRGDGEGNPGLVGGAKATVET---TLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKG 237
            ++  E     N+ +F    G GDA    +G   GRF       G G   L    +   E     L+   RL GF G LL   + + +AFF  LP +  RPAKFAL  ++GS+  M  FSVL+GP  HL+ L+  ERLPF+ AYI SL  TLY SL   SY+  ++  ++Q+ A V Y+LA+ PGG   LR  G + ++G
Sbjct:    2 SNSTEQSFRSNLAQFRWAQGNGDATQDAAGTPPGRFSRFYNAIGGGYIPLRSTERTNDEEAYFALSRWERLLGFGGCLLGAAVCFFVAFFT-LPLLALRPAKFALAFSLGSLLVMFGFSVLIGPINHLKHLVSKERLPFSIAYISSLAITLYFSLGAHSYVGSLIGAIIQVVALVSYVLAYFPGGVTTLRFGGQMALRG 199          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_006352003.1 (PREDICTED: protein transport protein SFT2-like [Solanum tuberosum])

HSP 1 Score: 104.0 bits (258), Expect = 7.000e-19
Identity = 75/213 (35.21%), Postives = 108/213 (50.70%), Query Frame = 0
Query:   28 DWYAQYAQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGC 241
            DW A YA  Q  G++ D+   L   V           A+D+ SG        +R      PG    A + V +    G  L  F   L  GV F  +AF + LP +V  P KFA+C TIG    +GSF  L GPK  L  +   ERLPFTA +IGS++ T+Y S+++ SY+L +L +V+Q+ A  +Y++++ PGG  G+R L   +      C
Sbjct:   27 DWNA-YAATQDEGSSSDLGFDLEAAVR---------TANDKFSGTFNVVTKGVR----DLPGSFQFATSNVPS----GKSLMYFGLFLAAGVFFIFIAFTMFLPVMVLMPQKFAICFTIGCAFIIGSFFALKGPKNQLTHMTSKERLPFTALFIGSMVGTIYVSMVLHSYILSVLFSVIQVLALSYYVISYFPGGSVGMRFLSSTLTSSIFRC 221          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_009390596.1 (PREDICTED: protein transport protein SFT2 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 103.2 bits (256), Expect = 1.200e-18
Identity = 62/153 (40.52%), Postives = 89/153 (58.17%), Query Frame = 0
Query:   88 PGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGC 241
            PG+   A ++V +    G  L  F  LL  GV F ++AF + LP +V  P KFALC T+G    +GSF  L GPK  L  +   ERLPFT  +IGS++ T+Y S+++ SY+L +L +V+Q+ A  +Y +++ PGG  GLR L   I      C
Sbjct:   79 PGIFQSATSSVPS----GKSLMYFGLLLASGVFFIVVAFTMFLPVMVLMPQKFALCFTLGCALIIGSFFALKGPKNQLAHMFSMERLPFTLVFIGSMVGTIYVSMVLHSYILSVLFSVIQVVALSYYSVSYFPGGSTGLRFLSSSITSSILKC 227          
The following BLAST results are available for this feature:
BLAST of NO01G05600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_004251550.13.700e-2035.68PREDICTED: protein transport protein SFT2 [Solanum... [more]
PHT73284.14.900e-2034.27hypothetical protein T459_24069 [Capsicum annuum][more]
PHU07908.14.900e-2034.27hypothetical protein BC332_24397 [Capsicum chinens... [more]
XP_021885683.18.300e-2038.10Got1/Sft2-like family-domain-containing protein [L... [more]
XP_015059756.11.400e-1935.68PREDICTED: protein transport protein SFT2-like [So... [more]
OAQ23196.12.400e-1938.76SFT2-domain-containing protein [Mortierella elonga... [more]
XP_019194703.12.400e-1936.62PREDICTED: protein transport protein SFT2-like [Ip... [more]
KZT05222.15.400e-1938.69SFT2-domain-containing protein [Laetiporus sulphur... [more]
XP_006352003.17.000e-1935.21PREDICTED: protein transport protein SFT2-like [So... [more]
XP_009390596.11.200e-1840.52PREDICTED: protein transport protein SFT2 [Musa ac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL001nonsL001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006474NSK006474Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05600.1NO01G05600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523492gene_591Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100223g4gene7671Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05600.1NO01G05600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05600 ID=NO01G05600|Name=NO01G05600|organism=Nannochloropsis oceanica|type=gene|length=1016bp
ATGAAAGGCTCAGGCGGAAGCAGCAACCACGCGGCAGGAATCGCAGGAGC
AGGAGCGGGAGCAGGAAATCAGTCCTTTGGGGATTGGTACGCGCAGTACG
CACAACGACAGCAGGCAGGAGgtacgtgtgaatcatcaccagtatgatgc
gattttcgggggcctacagttagttgtaggcgtctctgcaagaccctcct
tccctctgtcccgtcatcccccctgcacttcctcccttcactgcctgcct
ttccctctacataaattagatctccgctgtatctgttataaatttgctgt
attccgtcttcttaactgtccttgatcccttttttccctattgttgacct
ccacaaacacaccccaccctcccagCAAACGATGACGTCGAGATGGGCCT
GCTTGGCAACGTAGAGCGGTTTTTCCACGGCCACGGCATGGGGGACGCAC
ACGATCAAGTCTCAGGATTTGCGGGTCGATTCATTACCAGCATCCGCGGG
GACGGTGAGGGGAACCCTGGTCTGGTGGGAGGCGCCAAGGCAACGGTCGA
GACGACACTGAATTACGGCGCGCGGTTACGGGGGTTTGTAGGTCTATTGT
TGTTAGGCGTGTTGTTTTATTTGTTGGCCTTCTTTGTCGGCTTGCCGGCG
ATTGTGTTTCGACCTGCCAAGTTTGCCTTATGCGCGACAATTGGGAGTGT
GTGCACGATGGGCAGTTTCTCGGTATTGGTCGGACCGAAAGCCCACCTTC
AGTCCCTCCTTGTTTGGGAGCGTTTGCCCTTTACGGCCGCCTACATCGGG
TCTCTCATTTTCACCTTGTATGCGTCCTTGATCGTAAGGAGTTATTTACT
GGTCATTTTGTCCACTGTCGTCCAGATTGGAGCGTTTGTGTGGTATCTGC
TCGCTTTCCTTCCGGGGGGACCTGCGGGGCTACGGGTGCTAGGTGGCATC
ATCGTGAAGGGGTTCACAGGGTGTGGTAGGACCATGACATGGTGTGTATC
GAGCCTTGTGTCTTGA
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protein sequence of NO01G05600.1

>NO01G05600.1-protein ID=NO01G05600.1-protein|Name=NO01G05600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MKGSGGSSNHAAGIAGAGAGAGNQSFGDWYAQYAQRQQAGANDDVEMGLL
GNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVET
TLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVC
TMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLV
ILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGCGRTMTWCVSS
LVS*
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Synonyms
Publications