NO01G05600.1, NO01G05600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05600.1
Unique NameNO01G05600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length762
Alignment locationchr1:1557402..1558417 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1557402..1558417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05600.1 vs.
Match: EWM22772.1 (Vesicle transport protein, Got1/SFT2 [Nannochloropsis gaditana])

HSP 1 Score: 364.8 bits (935), Expect = 2.200e-97
Identity = 192/254 (75.59%), Postives = 215/254 (84.65%), Query Frame = 0 
Query:    1 MKGSGGSSNHAAGIAGAGAGAGNQSFGDWYAQYA-QRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGCGRTMTWCVSSLVS 254
            MK SGG++           G G+QSFGDWY QYA Q++Q   N D+E GLLGNV RFF   G+GDAHDQVSGFA RFITSIRGDGEGN GLVGGAKATVE+TLNYGARLRGFV LLL+G+LFYLLAFFVGLP IVFRPAKFAL AT+GS+CTMGSFSVLVGP+ HLQSLLVWERLPF  AY+GSL+ TLYASLI+RSYL V+ ST  QIGAFVWYLLAFLPGGPAGLRVLGG++V+G  GCG+T+TWC+SSLVS
Sbjct:    5 MKTSGGTN--------PAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS 250
The following BLAST results are available for this feature:
BLAST of NO01G05600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22772.12.200e-9775.59Vesicle transport protein, Got1/SFT2 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05600NO01G05600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05600.1NO01G05600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05600.1.cds1NO01G05600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05600.1.cds2NO01G05600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05600.1 ID=NO01G05600.1|Name=NO01G05600.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ATGAAAGGCTCAGGCGGAAGCAGCAACCACGCGGCAGGAATCGCAGGAGC
AGGAGCGGGAGCAGGAAATCAGTCCTTTGGGGATTGGTACGCGCAGTACG
CACAACGACAGCAGGCAGGAGCAAACGATGACGTCGAGATGGGCCTGCTT
GGCAACGTAGAGCGGTTTTTCCACGGCCACGGCATGGGGGACGCACACGA
TCAAGTCTCAGGATTTGCGGGTCGATTCATTACCAGCATCCGCGGGGACG
GTGAGGGGAACCCTGGTCTGGTGGGAGGCGCCAAGGCAACGGTCGAGACG
ACACTGAATTACGGCGCGCGGTTACGGGGGTTTGTAGGTCTATTGTTGTT
AGGCGTGTTGTTTTATTTGTTGGCCTTCTTTGTCGGCTTGCCGGCGATTG
TGTTTCGACCTGCCAAGTTTGCCTTATGCGCGACAATTGGGAGTGTGTGC
ACGATGGGCAGTTTCTCGGTATTGGTCGGACCGAAAGCCCACCTTCAGTC
CCTCCTTGTTTGGGAGCGTTTGCCCTTTACGGCCGCCTACATCGGGTCTC
TCATTTTCACCTTGTATGCGTCCTTGATCGTAAGGAGTTATTTACTGGTC
ATTTTGTCCACTGTCGTCCAGATTGGAGCGTTTGTGTGGTATCTGCTCGC
TTTCCTTCCGGGGGGACCTGCGGGGCTACGGGTGCTAGGTGGCATCATCG
TGAAGGGGTTCACAGGGTGTGGTAGGACCATGACATGGTGTGTATCGAGC
CTTGTGTCTTGA
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protein sequence of NO01G05600.1

>NO01G05600.1-protein ID=NO01G05600.1-protein|Name=NO01G05600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MKGSGGSSNHAAGIAGAGAGAGNQSFGDWYAQYAQRQQAGANDDVEMGLL
GNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVET
TLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVC
TMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLV
ILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGCGRTMTWCVSS
LVS*
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mRNA from alignment at chr1:1557402..1558417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05600.1 ID=NO01G05600.1|Name=NO01G05600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1016bp|location=Sequence derived from alignment at chr1:1557402..1558417- (Nannochloropsis oceanica)
ATGAAAGGCTCAGGCGGAAGCAGCAACCACGCGGCAGGAATCGCAGGAGC
AGGAGCGGGAGCAGGAAATCAGTCCTTTGGGGATTGGTACGCGCAGTACG
CACAACGACAGCAGGCAGGAGGTACGTGTGAATCATCACCAGTATGATGC
GATTTTCGGGGGCCTACAGTTAGTTGTAGGCGTCTCTGCAAGACCCTCCT
TCCCTCTGTCCCGTCATCCCCCCTGCACTTCCTCCCTTCACTGCCTGCCT
TTCCCTCTACATAAATTAGATCTCCGCTGTATCTGTTATAAATTTGCTGT
ATTCCGTCTTCTTAACTGTCCTTGATCCCTTTTTTCCCTATTGTTGACCT
CCACAAACACACCCCACCCTCCCAGCAAACGATGACGTCGAGATGGGCCT
GCTTGGCAACGTAGAGCGGTTTTTCCACGGCCACGGCATGGGGGACGCAC
ACGATCAAGTCTCAGGATTTGCGGGTCGATTCATTACCAGCATCCGCGGG
GACGGTGAGGGGAACCCTGGTCTGGTGGGAGGCGCCAAGGCAACGGTCGA
GACGACACTGAATTACGGCGCGCGGTTACGGGGGTTTGTAGGTCTATTGT
TGTTAGGCGTGTTGTTTTATTTGTTGGCCTTCTTTGTCGGCTTGCCGGCG
ATTGTGTTTCGACCTGCCAAGTTTGCCTTATGCGCGACAATTGGGAGTGT
GTGCACGATGGGCAGTTTCTCGGTATTGGTCGGACCGAAAGCCCACCTTC
AGTCCCTCCTTGTTTGGGAGCGTTTGCCCTTTACGGCCGCCTACATCGGG
TCTCTCATTTTCACCTTGTATGCGTCCTTGATCGTAAGGAGTTATTTACT
GGTCATTTTGTCCACTGTCGTCCAGATTGGAGCGTTTGTGTGGTATCTGC
TCGCTTTCCTTCCGGGGGGACCTGCGGGGCTACGGGTGCTAGGTGGCATC
ATCGTGAAGGGGTTCACAGGGTGTGGTAGGACCATGACATGGTGTGTATC
GAGCCTTGTGTCTTGA
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Coding sequence (CDS) from alignment at chr1:1557402..1558417-

>NO01G05600.1 ID=NO01G05600.1|Name=NO01G05600.1|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr1:1557402..1558417- (Nannochloropsis oceanica)
ATGAAAGGCTCAGGCGGAAGCAGCAACCACGCGGCAGGAATCGCAGGAGC
AGGAGCGGGAGCAGGAAATCAGTCCTTTGGGGATTGGTACGCGCAGTACG
CACAACGACAGCAGGCAGGAGCAAACGATGACGTCGAGATGGGCCTGCTT
GGCAACGTAGAGCGGTTTTTCCACGGCCACGGCATGGGGGACGCACACGA
TCAAGTCTCAGGATTTGCGGGTCGATTCATTACCAGCATCCGCGGGGACG
GTGAGGGGAACCCTGGTCTGGTGGGAGGCGCCAAGGCAACGGTCGAGACG
ACACTGAATTACGGCGCGCGGTTACGGGGGTTTGTAGGTCTATTGTTGTT
AGGCGTGTTGTTTTATTTGTTGGCCTTCTTTGTCGGCTTGCCGGCGATTG
TGTTTCGACCTGCCAAGTTTGCCTTATGCGCGACAATTGGGAGTGTGTGC
ACGATGGGCAGTTTCTCGGTATTGGTCGGACCGAAAGCCCACCTTCAGTC
CCTCCTTGTTTGGGAGCGTTTGCCCTTTACGGCCGCCTACATCGGGTCTC
TCATTTTCACCTTGTATGCGTCCTTGATCGTAAGGAGTTATTTACTGGTC
ATTTTGTCCACTGTCGTCCAGATTGGAGCGTTTGTGTGGTATCTGCTCGC
TTTCCTTCCGGGGGGACCTGCGGGGCTACGGGTGCTAGGTGGCATCATCG
TGAAGGGGTTCACAGGGTGTGGTAGGACCATGACATGGTGTGTATCGAGC
CTTGTGTCTTGA
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Synonyms
Publications