NO01G05600, NO01G05600 (gene) Nannochloropsis oceanica

Overview
NameNO01G05600
Unique NameNO01G05600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1016
Alignment locationchr1:1557402..1558417 -

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Properties
Property NameValue
DescriptionVesicle transport protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1557402..1558417 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: INTERPRO
TermDefinition
IPR011691Vesicle_transpt_SFT2
IPR007305Vesicle_transpt_Got1/SFT2
Homology
BLAST of NO01G05600 vs. NCBI_GenBank
Match: EWM22772.1 (Vesicle transport protein, Got1/SFT2 [Nannochloropsis gaditana])

HSP 1 Score: 364.8 bits (935), Expect = 2.200e-97
Identity = 192/254 (75.59%), Postives = 215/254 (84.65%), Query Frame = 0
Query:    1 MKGSGGSSNHAAGIAGAGAGAGNQSFGDWYAQY-AQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGCGRTMTWCVSSLVS 254
            MK SGG++           G G+QSFGDWY QY AQ++Q   N D+E GLLGNV RFF   G+GDAHDQVSGFA RFITSIRGDGEGN GLVGGAKATVE+TLNYGARLRGFV LLL+G+LFYLLAFFVGLP IVFRPAKFAL AT+GS+CTMGSFSVLVGP+ HLQSLLVWERLPF  AY+GSL+ TLYASLI+RSYL V+ ST  QIGAFVWYLLAFLPGGPAGLRVLGG++V+G  GCG+T+TWC+SSLVS
Sbjct:    5 MKTSGGTN--------PAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS 250          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_005854014.1 (hypothetical protein NGA_0223902 [Nannochloropsis gaditana CCMP526] >XP_005854692.1 hypothetical protein NGA_0223901 [Nannochloropsis gaditana CCMP526] >EKU21666.1 hypothetical protein NGA_0223901 [Nannochloropsis gaditana CCMP526] >EKU22343.1 hypothetical protein NGA_0223902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 362.5 bits (929), Expect = 1.100e-96
Identity = 191/254 (75.20%), Postives = 214/254 (84.25%), Query Frame = 0
Query:    1 MKGSGGSSNHAAGIAGAGAGAGNQSFGDWYAQY-AQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGCGRTMTWCVSSLVS 254
            MK SGG++           G G+QSFGDWY QY AQ++Q   N D+E GLLGNV RFF   G+GDAHDQVSGFA RFITSIRGDGEGN GLVGGAKATVE+TLNYGARLRGFV LLL+G+LFYLLAFFVGLP IVFRPAKFAL AT+GS+CTMGSFSVLVGP+ HLQSLLVWERLPF  AY+GSL+ TLYASLI+RSYL V+ ST  QIGAFVWYLLAFLPGGPAGLRVLGG++V+G  GCG+T+TWC+S LVS
Sbjct:    5 MKTSGGTN--------PAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSILVS 250          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: CBN73959.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 134.0 bits (336), Expect = 6.400e-28
Identity = 99/254 (38.98%), Postives = 140/254 (55.12%), Query Frame = 0
Query:   13 GIAGAGAGAGNQS--FGDWY--AQYAQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETT-----LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKG--------FTGCGRTMTWCVS 250
            G+ G G G    S  FG WY   Q A+ ++ G   DVE G      RF+  +       +  G A + +          PG +    A  +T      ++Y  R +GFV  LLL V F++LAF +GLP I+ RP KFAL  T+GS   MGSF++L GP AHL+S+L  +RLPFT AY+GS+  TLYA LI++SY++V+  +V+Q+ A  WY L+F+PGG  G+R     I K           GC +T+ +C+S
Sbjct:    4 GVNGFGGGGSKASSGFGQWYLDMQDAKEEETG---DVEDGSAPG-WRFWQAN-----EKKTDGQAAQALL---------PGFLRNEAAAPDTDAVIMGMSYQQRFKGFVVSLLLSVAFFVLAFVIGLPMIMLRPHKFALTFTLGSFFFMGSFAMLKGPVAHLKSMLARDRLPFTVAYVGSMGATLYACLILQSYMMVVTCSVIQLLALAWYFLSFVPGGSQGMRYFLSAIHKTARYTLLPCIEGCRKTLCFCLS 239          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: EJK50744.1 (hypothetical protein THAOC_30165 [Thalassiosira oceanica])

HSP 1 Score: 121.7 bits (304), Expect = 3.300e-24
Identity = 68/159 (42.77%), Postives = 96/159 (60.38%), Query Frame = 0
Query:  102 LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLI---VRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRV----LGGIIVKGFTGCGRTMTWCVSSLVS 254
            LNY  R + F  LLLL  LF+ L FFVG+P +  RP KFAL  T GS+  MGSF++L GP  H  S++  ERLPFT+ Y+GS++ TLY +      + YLLV+ ++  Q+ A +WYL+ FLPGG  G+++    L  ++     GC R    C+   V+
Sbjct:  775 LNYQQRFQAFSVLLLLSALFFALGFFVGVPMLTIRPQKFALSFTCGSITFMGSFAILKGPYEHAASMVTRERLPFTSVYVGSMLLTLYLTFTAGGAQGYLLVLAASAAQLLALMWYLITFLPGGATGMKILTQTLWTMLKPVMMGCARCQAMCIQRCVT 933          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: GAX16294.1 (hypothetical protein FisN_3Hh223 [Fistulifera solaris])

HSP 1 Score: 113.6 bits (283), Expect = 8.900e-22
Identity = 65/159 (40.88%), Postives = 96/159 (60.38%), Query Frame = 0
Query:  102 LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLI---VRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLR----VLGGIIVKGFTGCGRTMTWCVSSLVS 254
            + Y  R + F GLL L  LF+ LAFFVGLP +   P KF+L  ++GS+  M SF +L GP  H +S+L  +R+ FT  Y+GSL FTL+ +     +  Y +V+LS+ +Q+ A +WYL++FLPGG AGL+     +G ++   F  C R    C+   +S
Sbjct:   62 MGYQQRFQVFCGLLFLSALFFALAFFVGLPTMAVHPHKFSLSFSMGSLMFMSSFGILKGPMEHFKSMLQPDRMLFTTIYLGSLFFTLFCTFSYGGISGYFMVMLSSGIQLLALLWYLISFLPGGAAGLKYVFAAMGHLLKPVFMACARFQAMCMGRCLS 220          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_002176539.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51002.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 112.5 bits (280), Expect = 2.000e-21
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 0
Query:  102 LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLI---VRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLR----VLGGIIVKGFTGCGRTMTWCVS 250
            + Y  R + F  LL L  LF+ LAFF+G+P +V RP KFA+  T+GS+  MGSF +L GP  HLQS+   +RL F+  YIGS+  TLY +        YLLV+ ++ VQ+    WYL++FLPGG AGL+     +G I+      C +    CV+
Sbjct:   63 MGYQQRFKVFCALLFLSALFFALAFFIGVPLLVTRPQKFAISFTMGSITFMGSFGILKGPMEHLQSMFAADRLYFSFLYIGSMAMTLYFTFTHGGASGYLLVMAASAVQLVCLFWYLISFLPGGAAGLQYVFAAMGHILKPALVVCAQFQAVCVA 217          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: GAX15780.1 (hypothetical protein FisN_3Lh223 [Fistulifera solaris])

HSP 1 Score: 112.1 bits (279), Expect = 2.600e-21
Identity = 64/159 (40.25%), Postives = 96/159 (60.38%), Query Frame = 0
Query:  102 LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLI---VRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLR----VLGGIIVKGFTGCGRTMTWCVSSLVS 254
            + Y  R + F GLL L  +F+ LAFFVGLP +   P KF+L  ++GS+  M SF +L GP  H +S+L  +R+ FT  Y+GSL FTL+ +     +  Y +V+LS+ +Q+ A +WYL++FLPGG AGL+     +G ++   F  C R    C+   +S
Sbjct:   62 MGYQQRFQVFCGLLFLSAVFFALAFFVGLPTMAVHPHKFSLSFSMGSLMFMSSFGILKGPMEHFKSMLQPDRMLFTTIYLGSLFFTLFCTFSYGGISGYFMVMLSSGIQLVALLWYLISFLPGGAAGLKYVFAAMGHLLKPLFIACARFQALCMGRCLS 220          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_002294222.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88577.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 111.3 bits (277), Expect = 4.400e-21
Identity = 65/159 (40.88%), Postives = 96/159 (60.38%), Query Frame = 0
Query:  102 LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLI---VRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVL----GGIIVKGFTGCGRTMTWCVSSLVS 254
            +NY  R + F   LLL V+F+ L FFVG+P +  RP KFAL  T GS+  MGSF++L GP AHL S+L  +R+ FT  Y+GS++ TLY +      + Y+LV+ ++ +Q+ A +WYL+ FLPGG  G++VL      ++     GC +    C+    S
Sbjct:   78 MNYQQRFQIFCICLLLSVVFFALGFFVGIPLLTVRPQKFALSFTCGSITFMGSFAILKGPHAHLMSMLAGDRIHFTVFYVGSMLMTLYLTFTAGGAKGYVLVLGASGLQLLALLWYLVTFLPGGAMGMKVLTQAIWTLLKPLMAGCMKFQAVCIGRFTS 236          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: KFH62325.1 (hypothetical protein MVEG_11536 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 109.0 bits (271), Expect = 2.200e-20
Identity = 76/180 (42.22%), Postives = 103/180 (57.22%), Query Frame = 0
Query:   61 GMGDAHDQVSGFAGRFITSIRGDGEGN-PGLVGGAKATVETT---LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKG 237
            G G A DQ    A  + + +R    G  P  +GG     E     L++  R+ GF   +  GV  +++AFF+GLP ++  PAKFA   T GS+  M SF++L GP AH ++L+  ERLPFTA Y GS+IFTLYASL   SY L I+ T+VQI A V+Y  ++ P     LR LG  +  G
Sbjct:   31 GPGGAFDQ----ASTWFSGVRNQVSGYVPVSLGGGTQPQEEDWLGLSWFQRMAGFAICVAGGVACFMIAFFIGLPLLLLNPAKFATSFTFGSLLLMTSFALLKGPMAHAKALISRERLPFTATYFGSMIFTLYASLGAGSYFLTIIGTIVQILALVYYFTSYSPFNAGSLR-LGSRMASG 205          
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_016541271.1 (PREDICTED: protein transport protein SFT2-like [Capsicum annuum])

HSP 1 Score: 108.6 bits (270), Expect = 2.900e-20
Identity = 73/213 (34.27%), Postives = 109/213 (51.17%), Query Frame = 0
Query:   28 DWYAQYAQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGC 241
            DW A  A +   G++ D+   L   V           A+D+VSG        ++    G PG    A + V +    G  L  F   L  GV F  +AF + LP +V  P KFA+C TIG    +GSF  L GPK  L  +   ERLPFT  +IGS++ T+Y S+++ SY+L +L +V+Q+ A  +Y++++ PGG AG++ L   +      C
Sbjct:   27 DWNAYAADQDNQGSSSDLGFDLEAAVR---------TANDKVSGTFNVVSKGVK----GLPGSFQSATSNVPS----GKSLMYFGLFLAAGVFFIFIAFTMFLPVMVLMPQKFAICFTIGCAFIIGSFFALKGPKNQLTHMTTKERLPFTGVFIGSMVGTVYVSMVLHSYILSVLFSVIQVFALSYYVISYFPGGSAGMKFLSSTLTSSILRC 222          
The following BLAST results are available for this feature:
BLAST of NO01G05600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22772.12.200e-9775.59Vesicle transport protein, Got1/SFT2 [Nannochlorop... [more]
XP_005854014.11.100e-9675.20hypothetical protein NGA_0223902 [Nannochloropsis ... [more]
CBN73959.16.400e-2838.98conserved unknown protein [Ectocarpus siliculosus][more]
EJK50744.13.300e-2442.77hypothetical protein THAOC_30165 [Thalassiosira oc... [more]
GAX16294.18.900e-2240.88hypothetical protein FisN_3Hh223 [Fistulifera sola... [more]
XP_002176539.12.000e-2142.58predicted protein, partial [Phaeodactylum tricornu... [more]
GAX15780.12.600e-2140.25hypothetical protein FisN_3Lh223 [Fistulifera sola... [more]
XP_002294222.14.400e-2140.88predicted protein [Thalassiosira pseudonana CCMP13... [more]
KFH62325.12.200e-2042.22hypothetical protein MVEG_11536 [Mortierella verti... [more]
XP_016541271.12.900e-2034.27PREDICTED: protein transport protein SFT2-like [Ca... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL001nonsL001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006474NSK006474Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05600.1NO01G05600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523492gene_591Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100223g4gene7671Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05600.1NO01G05600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05600 ID=NO01G05600|Name=NO01G05600|organism=Nannochloropsis oceanica|type=gene|length=1016bp
ATGAAAGGCTCAGGCGGAAGCAGCAACCACGCGGCAGGAATCGCAGGAGC
AGGAGCGGGAGCAGGAAATCAGTCCTTTGGGGATTGGTACGCGCAGTACG
CACAACGACAGCAGGCAGGAGgtacgtgtgaatcatcaccagtatgatgc
gattttcgggggcctacagttagttgtaggcgtctctgcaagaccctcct
tccctctgtcccgtcatcccccctgcacttcctcccttcactgcctgcct
ttccctctacataaattagatctccgctgtatctgttataaatttgctgt
attccgtcttcttaactgtccttgatcccttttttccctattgttgacct
ccacaaacacaccccaccctcccagCAAACGATGACGTCGAGATGGGCCT
GCTTGGCAACGTAGAGCGGTTTTTCCACGGCCACGGCATGGGGGACGCAC
ACGATCAAGTCTCAGGATTTGCGGGTCGATTCATTACCAGCATCCGCGGG
GACGGTGAGGGGAACCCTGGTCTGGTGGGAGGCGCCAAGGCAACGGTCGA
GACGACACTGAATTACGGCGCGCGGTTACGGGGGTTTGTAGGTCTATTGT
TGTTAGGCGTGTTGTTTTATTTGTTGGCCTTCTTTGTCGGCTTGCCGGCG
ATTGTGTTTCGACCTGCCAAGTTTGCCTTATGCGCGACAATTGGGAGTGT
GTGCACGATGGGCAGTTTCTCGGTATTGGTCGGACCGAAAGCCCACCTTC
AGTCCCTCCTTGTTTGGGAGCGTTTGCCCTTTACGGCCGCCTACATCGGG
TCTCTCATTTTCACCTTGTATGCGTCCTTGATCGTAAGGAGTTATTTACT
GGTCATTTTGTCCACTGTCGTCCAGATTGGAGCGTTTGTGTGGTATCTGC
TCGCTTTCCTTCCGGGGGGACCTGCGGGGCTACGGGTGCTAGGTGGCATC
ATCGTGAAGGGGTTCACAGGGTGTGGTAGGACCATGACATGGTGTGTATC
GAGCCTTGTGTCTTGA
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protein sequence of NO01G05600.1

>NO01G05600.1-protein ID=NO01G05600.1-protein|Name=NO01G05600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MKGSGGSSNHAAGIAGAGAGAGNQSFGDWYAQYAQRQQAGANDDVEMGLL
GNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVET
TLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVC
TMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLV
ILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGCGRTMTWCVSS
LVS*
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Synonyms
Publications