NO01G05600, NO01G05600 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G05600 vs. NCBI_GenBank
Match: EWM22772.1 (Vesicle transport protein, Got1/SFT2 [Nannochloropsis gaditana]) HSP 1 Score: 364.8 bits (935), Expect = 2.200e-97 Identity = 192/254 (75.59%), Postives = 215/254 (84.65%), Query Frame = 0 Query: 1 MKGSGGSSNHAAGIAGAGAGAGNQSFGDWYAQY-AQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGCGRTMTWCVSSLVS 254 MK SGG++ G G+QSFGDWY QY AQ++Q N D+E GLLGNV RFF G+GDAHDQVSGFA RFITSIRGDGEGN GLVGGAKATVE+TLNYGARLRGFV LLL+G+LFYLLAFFVGLP IVFRPAKFAL AT+GS+CTMGSFSVLVGP+ HLQSLLVWERLPF AY+GSL+ TLYASLI+RSYL V+ ST QIGAFVWYLLAFLPGGPAGLRVLGG++V+G GCG+T+TWC+SSLVS Sbjct: 5 MKTSGGTN--------PAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS 250
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_005854014.1 (hypothetical protein NGA_0223902 [Nannochloropsis gaditana CCMP526] >XP_005854692.1 hypothetical protein NGA_0223901 [Nannochloropsis gaditana CCMP526] >EKU21666.1 hypothetical protein NGA_0223901 [Nannochloropsis gaditana CCMP526] >EKU22343.1 hypothetical protein NGA_0223902 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 362.5 bits (929), Expect = 1.100e-96 Identity = 191/254 (75.20%), Postives = 214/254 (84.25%), Query Frame = 0 Query: 1 MKGSGGSSNHAAGIAGAGAGAGNQSFGDWYAQY-AQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGCGRTMTWCVSSLVS 254 MK SGG++ G G+QSFGDWY QY AQ++Q N D+E GLLGNV RFF G+GDAHDQVSGFA RFITSIRGDGEGN GLVGGAKATVE+TLNYGARLRGFV LLL+G+LFYLLAFFVGLP IVFRPAKFAL AT+GS+CTMGSFSVLVGP+ HLQSLLVWERLPF AY+GSL+ TLYASLI+RSYL V+ ST QIGAFVWYLLAFLPGGPAGLRVLGG++V+G GCG+T+TWC+S LVS Sbjct: 5 MKTSGGTN--------PAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSILVS 250
BLAST of NO01G05600 vs. NCBI_GenBank
Match: CBN73959.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 134.0 bits (336), Expect = 6.400e-28 Identity = 99/254 (38.98%), Postives = 140/254 (55.12%), Query Frame = 0 Query: 13 GIAGAGAGAGNQS--FGDWY--AQYAQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETT-----LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKG--------FTGCGRTMTWCVS 250 G+ G G G S FG WY Q A+ ++ G DVE G RF+ + + G A + + PG + A +T ++Y R +GFV LLL V F++LAF +GLP I+ RP KFAL T+GS MGSF++L GP AHL+S+L +RLPFT AY+GS+ TLYA LI++SY++V+ +V+Q+ A WY L+F+PGG G+R I K GC +T+ +C+S Sbjct: 4 GVNGFGGGGSKASSGFGQWYLDMQDAKEEETG---DVEDGSAPG-WRFWQAN-----EKKTDGQAAQALL---------PGFLRNEAAAPDTDAVIMGMSYQQRFKGFVVSLLLSVAFFVLAFVIGLPMIMLRPHKFALTFTLGSFFFMGSFAMLKGPVAHLKSMLARDRLPFTVAYVGSMGATLYACLILQSYMMVVTCSVIQLLALAWYFLSFVPGGSQGMRYFLSAIHKTARYTLLPCIEGCRKTLCFCLS 239
BLAST of NO01G05600 vs. NCBI_GenBank
Match: EJK50744.1 (hypothetical protein THAOC_30165 [Thalassiosira oceanica]) HSP 1 Score: 121.7 bits (304), Expect = 3.300e-24 Identity = 68/159 (42.77%), Postives = 96/159 (60.38%), Query Frame = 0 Query: 102 LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLI---VRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRV----LGGIIVKGFTGCGRTMTWCVSSLVS 254 LNY R + F LLLL LF+ L FFVG+P + RP KFAL T GS+ MGSF++L GP H S++ ERLPFT+ Y+GS++ TLY + + YLLV+ ++ Q+ A +WYL+ FLPGG G+++ L ++ GC R C+ V+ Sbjct: 775 LNYQQRFQAFSVLLLLSALFFALGFFVGVPMLTIRPQKFALSFTCGSITFMGSFAILKGPYEHAASMVTRERLPFTSVYVGSMLLTLYLTFTAGGAQGYLLVLAASAAQLLALMWYLITFLPGGATGMKILTQTLWTMLKPVMMGCARCQAMCIQRCVT 933
BLAST of NO01G05600 vs. NCBI_GenBank
Match: GAX16294.1 (hypothetical protein FisN_3Hh223 [Fistulifera solaris]) HSP 1 Score: 113.6 bits (283), Expect = 8.900e-22 Identity = 65/159 (40.88%), Postives = 96/159 (60.38%), Query Frame = 0 Query: 102 LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLI---VRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLR----VLGGIIVKGFTGCGRTMTWCVSSLVS 254 + Y R + F GLL L LF+ LAFFVGLP + P KF+L ++GS+ M SF +L GP H +S+L +R+ FT Y+GSL FTL+ + + Y +V+LS+ +Q+ A +WYL++FLPGG AGL+ +G ++ F C R C+ +S Sbjct: 62 MGYQQRFQVFCGLLFLSALFFALAFFVGLPTMAVHPHKFSLSFSMGSLMFMSSFGILKGPMEHFKSMLQPDRMLFTTIYLGSLFFTLFCTFSYGGISGYFMVMLSSGIQLLALLWYLISFLPGGAAGLKYVFAAMGHLLKPVFMACARFQAMCMGRCLS 220
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_002176539.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51002.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 112.5 bits (280), Expect = 2.000e-21 Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 0 Query: 102 LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLI---VRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLR----VLGGIIVKGFTGCGRTMTWCVS 250 + Y R + F LL L LF+ LAFF+G+P +V RP KFA+ T+GS+ MGSF +L GP HLQS+ +RL F+ YIGS+ TLY + YLLV+ ++ VQ+ WYL++FLPGG AGL+ +G I+ C + CV+ Sbjct: 63 MGYQQRFKVFCALLFLSALFFALAFFIGVPLLVTRPQKFAISFTMGSITFMGSFGILKGPMEHLQSMFAADRLYFSFLYIGSMAMTLYFTFTHGGASGYLLVMAASAVQLVCLFWYLISFLPGGAAGLQYVFAAMGHILKPALVVCAQFQAVCVA 217
BLAST of NO01G05600 vs. NCBI_GenBank
Match: GAX15780.1 (hypothetical protein FisN_3Lh223 [Fistulifera solaris]) HSP 1 Score: 112.1 bits (279), Expect = 2.600e-21 Identity = 64/159 (40.25%), Postives = 96/159 (60.38%), Query Frame = 0 Query: 102 LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLI---VRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLR----VLGGIIVKGFTGCGRTMTWCVSSLVS 254 + Y R + F GLL L +F+ LAFFVGLP + P KF+L ++GS+ M SF +L GP H +S+L +R+ FT Y+GSL FTL+ + + Y +V+LS+ +Q+ A +WYL++FLPGG AGL+ +G ++ F C R C+ +S Sbjct: 62 MGYQQRFQVFCGLLFLSAVFFALAFFVGLPTMAVHPHKFSLSFSMGSLMFMSSFGILKGPMEHFKSMLQPDRMLFTTIYLGSLFFTLFCTFSYGGISGYFMVMLSSGIQLVALLWYLISFLPGGAAGLKYVFAAMGHLLKPLFIACARFQALCMGRCLS 220
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_002294222.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88577.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 111.3 bits (277), Expect = 4.400e-21 Identity = 65/159 (40.88%), Postives = 96/159 (60.38%), Query Frame = 0 Query: 102 LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLI---VRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVL----GGIIVKGFTGCGRTMTWCVSSLVS 254 +NY R + F LLL V+F+ L FFVG+P + RP KFAL T GS+ MGSF++L GP AHL S+L +R+ FT Y+GS++ TLY + + Y+LV+ ++ +Q+ A +WYL+ FLPGG G++VL ++ GC + C+ S Sbjct: 78 MNYQQRFQIFCICLLLSVVFFALGFFVGIPLLTVRPQKFALSFTCGSITFMGSFAILKGPHAHLMSMLAGDRIHFTVFYVGSMLMTLYLTFTAGGAKGYVLVLGASGLQLLALLWYLVTFLPGGAMGMKVLTQAIWTLLKPLMAGCMKFQAVCIGRFTS 236
BLAST of NO01G05600 vs. NCBI_GenBank
Match: KFH62325.1 (hypothetical protein MVEG_11536 [Mortierella verticillata NRRL 6337]) HSP 1 Score: 109.0 bits (271), Expect = 2.200e-20 Identity = 76/180 (42.22%), Postives = 103/180 (57.22%), Query Frame = 0 Query: 61 GMGDAHDQVSGFAGRFITSIRGDGEGN-PGLVGGAKATVETT---LNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKG 237 G G A DQ A + + +R G P +GG E L++ R+ GF + GV +++AFF+GLP ++ PAKFA T GS+ M SF++L GP AH ++L+ ERLPFTA Y GS+IFTLYASL SY L I+ T+VQI A V+Y ++ P LR LG + G Sbjct: 31 GPGGAFDQ----ASTWFSGVRNQVSGYVPVSLGGGTQPQEEDWLGLSWFQRMAGFAICVAGGVACFMIAFFIGLPLLLLNPAKFATSFTFGSLLLMTSFALLKGPMAHAKALISRERLPFTATYFGSMIFTLYASLGAGSYFLTIIGTIVQILALVYYFTSYSPFNAGSLR-LGSRMASG 205
BLAST of NO01G05600 vs. NCBI_GenBank
Match: XP_016541271.1 (PREDICTED: protein transport protein SFT2-like [Capsicum annuum]) HSP 1 Score: 108.6 bits (270), Expect = 2.900e-20 Identity = 73/213 (34.27%), Postives = 109/213 (51.17%), Query Frame = 0 Query: 28 DWYAQYAQRQQAGANDDVEMGLLGNVERFFHGHGMGDAHDQVSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGFVGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATIGSVCTMGSFSVLVGPKAHLQSLLVWERLPFTAAYIGSLIFTLYASLIVRSYLLVILSTVVQIGAFVWYLLAFLPGGPAGLRVLGGIIVKGFTGC 241 DW A A + G++ D+ L V A+D+VSG ++ G PG A + V + G L F L GV F +AF + LP +V P KFA+C TIG +GSF L GPK L + ERLPFT +IGS++ T+Y S+++ SY+L +L +V+Q+ A +Y++++ PGG AG++ L + C Sbjct: 27 DWNAYAADQDNQGSSSDLGFDLEAAVR---------TANDKVSGTFNVVSKGVK----GLPGSFQSATSNVPS----GKSLMYFGLFLAAGVFFIFIAFTMFLPVMVLMPQKFAICFTIGCAFIIGSFFALKGPKNQLTHMTTKERLPFTGVFIGSMVGTVYVSMVLHSYILSVLFSVIQVFALSYYVISYFPGGSAGMKFLSSTLTSSILRC 222 The following BLAST results are available for this feature:
BLAST of NO01G05600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05600 ID=NO01G05600|Name=NO01G05600|organism=Nannochloropsis oceanica|type=gene|length=1016bpback to top protein sequence of NO01G05600.1 >NO01G05600.1-protein ID=NO01G05600.1-protein|Name=NO01G05600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bpback to top Synonyms
Publications
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