NO01G05160, NO01G05160 (gene) Nannochloropsis oceanica

Overview
NameNO01G05160
Unique NameNO01G05160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2282
Alignment locationchr1:1370086..1372367 -

Link to JBrowse

Properties
Property NameValue
DescriptionHistone H5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1370086..1372367 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
Homology
The following BLAST results are available for this feature:
BLAST of NO01G05160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05160.1NO01G05160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05160.1NO01G05160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05160 ID=NO01G05160|Name=NO01G05160|organism=Nannochloropsis oceanica|type=gene|length=2282bp
CACGTCAATTCCTTGGCAAGGCATCCCACAACCCCAAACTAGCCCCGAGG
AATCGGAGTGACGTAGGAAAGGGGGAGGTCGGTCGGGAGAAGGGCCTGTA
ACGCCCGCGGTGGTTATGCTCTGGCGAGAGAGCAACGACCAGGGCCTTCA
ACGCCTGTATAAGCCTTCTCGAGTTTTCTCGTGCCTTGTGCTCCCCCTCT
TTCTTCCGTTCACGTGCCCCACCTGCACCACGCGCCCACATGCGGATTGT
TCGTACCCACCCCATACAGCTACAAAGCTACTACCCGCTCCCCGCCACCC
CCACCAACAACCATGGCTATCCAGgtaagcagtccgtttcagaacgacct
tagggcgggaaaagagacgcccttcccttcaaaacaaaaatgccctcact
cgcgcactccatggcctccccacctcgatctacatacccacgcatctacc
tctacacatacacaaacacttgcacactcactccggcctgcccactccga
ttttcacacccacgcaatcacctacagAAGAAAACTGCCCCCCCCAAGCG
AGGACGCCCTGCGGGCAAGAAGGCTCCTGCGAAAAAAGCCCCTGCTGCCA
AGAAGGCGGTTGTCAAGGCGGCTGGCAAGAAAGCCACGAAGCCGGCTGGC
AAGCGTGGACGTCCCGCCAAGGCCGAGGCCGCCCCCGCTGCGGTTCCGGC
TCCCGCGgtaagtctccctcctaccctccttatcttcccctccttcccgc
cctccctcgctcatgcgtggatgcgtgtgtccttgaggtccattcttgct
cctgaattgcttcctaccttccttcccaatatatttcgtcgactggatca
ataaaccgaattctaactcttctcttccctcgatcccttcccacttccct
cccgccaccctaacagAAGGCCACGCCCGAGGCTGCCCTCGTGAAGATGG
CCGCCAAGCCCAAGACTACCAAGgtaagtttactctgctccctccctccc
tccctccctccctccctccctccctccttttctcctttctatcgttcacc
ggatgaccagctactcccctttctcaacccctccttccccctctccgtcc
cttcgtccctccaccctaacagCCGAAGGCTGTGGCCAAGAAGAGCAAGC
CCGCTGTCAAAAAGACCAAGCCCGCTGTCAAGAAGGCCGgtaggtacccc
tgccatccctccgttcccctttcctcgtcaccgcaccaccctatcttact
ccctcgctcctgccttccctccctccctcactttcttccgacctttcagC
CCCCAAGCCCAAGGCCACCGCTGCTAAGAAGAGCAAGCCTGCTGCCAAGA
AGACCGgtaagtacatttcccctccctccctctttttctcttccttcatc
cctctctcttcctcgccttacccatccctcatcctccctcccttcccccc
tccctcccttccttccagCCCCGAAGAAGCCCGCCGCAAAGAAGTCCAAG
CCCGCGGCGAAGAAGTCCAAGCCCGCGGCGAAGAAGGCTAAGACCACCAA
Ggcaagtctttaccctctctcccttcatttcctttctccgtcctctcctc
tcgtgcataatcctcacccttcctcccttccccctgcttccttccctccc
tctatctcacagCCTAAGGTGGCTGCGAAGAAGGGCCCCGGCCGCCCCAA
GAAGGCCTAAATCATTTATTTGACTTTAGGCGAGAGCGAGATTATAGTAC
GTGTGACGGAAAGCAAGTTCACATCTTCCCCTGTGCAGGCATGTGAGTGT
GTGTATGAGGGGGGGTTAATAAGTGTGTGTGCCTGCGGAACAGAAGTGTG
CGCTCTCACCCCGGTGACTAACACCTAAGAGTGAAGGATCAGCAAGCGTT
TTAAAAAGAAGGGATGAAAAAGGCTGGAAGTTTGATGAAAAGAAACACAA
GAATCAGAATGGGAAAGCGAGAAAGAGAGCTGTCGACAGAGAGAGGGAGA
GTGAAAAGTGAATACGCCATACACCGGAAACGAGGAGTTAAAGAGAGTGA
CAAGAACGCATTCATCAAGGCAAGATAGTCTAGTGGGCTGTTTGCAGATT
CAGGCTAGACTACTCCATTTTTTCACACACACACCAACACTACCACAACC
GACACTGCCACCTATAAAGCCTAAAAAGAGAGGAATGAAACATCAACAAC
AACAGAAGACCACCACGTCAAACCCACGATGAGAACGATGATAAGGAAAA
TGAGGAAACGAAGGAAAAAACAACAACCACCC
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protein sequence of NO01G05160.1

>NO01G05160.1-protein ID=NO01G05160.1-protein|Name=NO01G05160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MAIQKKTAPPKRGRPAGKKAPAKKAPAAKKAVVKAAGKKATKPAGKRGRP
AKAEAAPAAVPAPAKATPEAALVKMAAKPKTTKPKAVAKKSKPAVKKTKP
AVKKAAPKPKATAAKKSKPAAKKTAPKKPAAKKSKPAAKKSKPAAKKAKT
TKPKVAAKKGPGRPKKA*
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Synonyms
Publications