NO01G04760, NO01G04760 (gene) Nannochloropsis oceanica

Overview
NameNO01G04760
Unique NameNO01G04760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3243
Alignment locationchr1:1257815..1261057 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1257815..1261057 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G04760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007790NSK007790Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04760.1NO01G04760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577494gene_500Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100042g22gene1223Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04760.1NO01G04760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04760 ID=NO01G04760|Name=NO01G04760|organism=Nannochloropsis oceanica|type=gene|length=3243bp
CCGTAATCCACAAGAAATACACCGACAAACTGCCCAAGTACACAATTTCC
TCTTTTTTTCCATTATCTCCCCCTCTTATCCCTCACCCCCCCGTCTCCAC
CTCGTCCTACTTCTAACGCACTGTGGAAAACTGTGCCAATTCGGACGTCG
TGAACTCAGGTACTGTACAAACGCCTCCCAAGTCCCTGTCTATTCCCACC
CGGCTCTGTCCACAGAAAGCCGCTAACGGGGATCGAGGCCCGTAAATCTT
GGCTTGCCGCACGTGCGTGTCCCGCCCGTTTTGATGCATGGCAATTATGC
TTATTTGCAAGAAGAAAGCCCGTAAAAGACCTCCTTGTGATTCACCAGTG
TCCATCCCCACGAGCGAGCCAGGGCCGTCTGGTCCGTAGGCATACGGGTT
GCGCAGAGGCACCTTCACCCATCCTTGCGGCTCCTTCAAATTGACCACTT
GGATCTCCACCAGGTCATGAAACGTGGTGCCAGCCTTCATGCTGATTTTT
TTTGGGGTATAAGATTCATCCAAACTGTAGTCCAGGTATAGCGCCACCTC
CAAGATGGTCATTTTCTTGTGGAATTGCACGTTGATCAAGTGGGGTTGTG
CTCCGTCCGACTGCCAGTATGTGTCCATGTTGTCGTCTCGAATTTGCTCC
ACGCCGTTGCCAGGCTTGGCCGTCGACAAAGACCATACCGCCTCATGCCC
AATCTCTCGCAGTTCCTTGGTGGAGATGAGCGCGGCCGTCGTGGTGCTGG
TGCTAGTGCTAGCCTCAGCTGTCGATGCAGCATCCATGACGGCCGACACA
GCGTTGGGGAAAGGGGCGTGCTTCCAGAGCTAGACGCTAGCTGCTGCAAG
GGGTCCCAGGCAGCAAGCCCCGAGTAGTAAACCCGCTCTCTGTGCGTGTG
TTGAGGGGACAGAGGGAGCGATTTTCGAGGTTGTGTTCGCAGGAGAAAAA
GCAGCGGCAACTCCGTGGAAACCGAAACCATCGCCAGCTCGCTGAATTCA
GCGCTCGACATGCGTCTTACAGCACACTACCGCCCCCAAGCATACACAGG
GCGGCACAGTTATGCAGGCAGCCGCGTCACTCGCAGGCCAAGTCACCCTT
CCTGCCGACGATGAACCTTTCCCTTCCCAACCCTCGCCACCACGGCATCC
CCCGCTCACCGCTGTCCCATCCCCAGCTTCAGACGCCATGATGCCAATGC
TGGACTTGGAAGCCCCTGTCGTGGTAATGCGGCTGCCGGGCAAGCGGCCC
CGATGCAGACCTTGGAGTCCAGCAGAGGAGGCGCGGCTGACAGACGTGTG
CCAAAACTTCTGGCCGGACGTGAATTgtacgtagagagacttaccacgcc
atgctgtgtgtggggaggtcagtcggaggaaaggtggaatagatgtcctg
tgctcaccccctttacctcacacccaatcttgcgcgtccatgcctatata
gGGCCATTAGTAGCCGGAGAACTGGGCCGTGATGTCCGTGATTGCATCTC
ACGAAGTACCTTGCTGCATCTCCAAGATCTACGCGGCGAGGCCCCTGTGT
CATCACCGAAGGAATTCTCGCCGACACATTCGCAGCCTGCACAATCAGCA
GAACAACAATTGCAGAATGAGGATGACGACACCATGCCCACCGCGACAAG
GACAATTGGGAAAGGTTTCAAGGACAAGGGTTTTCACATAGCTTCTGGTA
GTTTACACAAAACAGAAGCCAGTAGTAATAACAGTAGTAGAAAAAGTAGT
AGTAGTAGTAGTAGGAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAATTATAATAGTAGTGGTGGTGGTGGTGGTGGTGGTAGTA
GTAGTAGTAGTAGTAGCAGCAGCAGCAGCGTGATCAATAACCCATTACCT
AGCCAGGTGGTAGCTCTGGCCTTGCAGCACCAATTTCATTGGGTGGCCGT
TGgtacgtttgtgtctgagatggtgaacaacaactttcatatagccacaa
cgactaattgaacatatttctttatctgagcagGCAGAGCCCTCAAGGCC
GATCCTTGGGAGTGTTGGAAGACCTACGAGGCCTACACCCAAGgtaagct
cctccacaccccatactttctccctctctttcctctctctataacacctc
ccttgcaataatatttccctctccaccctctccctcctcaacccccagAA
AAAAACTTCCACAGCGATGACACTGATGCAAGTCATGGGCCCACAACCAT
TTCATCTCTTGCCGATGACGTGGCCGCATTCCTGCCGTTTGCCTCCTCCC
CCTCCTCTCTGCGAAGGAATCCTCGTGCTCCTCCCTACGACACCTTCAAC
CATCACCAGTCCCCCGTCGCATCCGCTACTACTGCAGCTGTTACTACTGG
AGGCGAGGATGACAAGGGCAGCAATAACCGCAGCAACATATGCAGCCCCA
TCTCTCCCCCCCCTTCTGCGCTTTCTCCACTCATGGGAGCAGGCGGTCCT
TCCTTCCTCCTCCATCACTTCCCTCGACCCAACCCACGGTCACGGCTCTC
CGTTTCTCCCCAGGCCCCTGCTAGCAGCACCGCAACTACCACTATCACCA
CCCCTGCTGCCTCCTTCCTTCGTTCCTTCTCTACATCCTCGTTTCAGCAG
CCAGGCGTAAGCCCCAATGGAGGAGGAAAAGGGGGAGGAGGAGAAGGAGA
AACACAAATGCATCAGCCTGGAGGTCTGCAAGACAGTGTATATAGCACAT
TTTCTGGGATGGGGGGAGGAGGTGGAGGAGGGGCATCCATTTTCTTGCCA
GGTTCTGAAAGCATGAGCTTGTCGATGGTTCAATCGGCCATGTTGGACAT
GCCCTCTCTTTATCTCGGGCAATCCACCGCATTTGGTGCGGGCGCTTCTA
CATTTTTGGTCGGGGGGGGTTCGACCCTCTCTCCTCCCGGTGCTGCTGGT
GTAGGTGCGCCTGGCGCTGATGTTGATGGCGGTGGTCCAGACGATCTCCT
GCCACCGTTCCCCCCTCATACAGCCCCTCCATTTCTATCATCCTCCCCTG
TGCTTCAACCATGGCCACGAGGCCTGACTGGACCGACGCACGCGCTTATA
CCGTCGACCATTATTGAAGGGTCGGAAGCCGGCGGCTGTAGCACAGGTAC
TTTGGACCAGTCGGAATTGAAAAAATAGACAGTAGAACAGAAGTGCAGGA
ATCAAAGTCAATTGTAGGAATGTCACATCAAAAGCTTTCTTGT
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protein sequence of NO01G04760.1

>NO01G04760.1-protein ID=NO01G04760.1-protein|Name=NO01G04760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MQAAASLAGQVTLPADDEPFPSQPSPPRHPPLTAVPSPASDAMMPMLDLE
APVVVMRLPGKRPRCRPWSPAEEARLTDVCQNFWPDVNWPLVAGELGRDV
RDCISRSTLLHLQDLRGEAPVSSPKEFSPTHSQPAQSAEQQLQNEDDDTM
PTATRTIGKGFKDKGFHIASGSLHKTEASSNNSSRKSSSSSSRSSSSSSS
SSSSSSSSNYNSSGGGGGGGSSSSSSSSSSSVINNPLPSQVVALALQHQF
HWVAVGRALKADPWECWKTYEAYTQEKNFHSDDTDASHGPTTISSLADDV
AAFLPFASSPSSLRRNPRAPPYDTFNHHQSPVASATTAAVTTGGEDDKGS
NNRSNICSPISPPPSALSPLMGAGGPSFLLHHFPRPNPRSRLSVSPQAPA
SSTATTTITTPAASFLRSFSTSSFQQPGVSPNGGGKGGGGEGETQMHQPG
GLQDSVYSTFSGMGGGGGGGASIFLPGSESMSLSMVQSAMLDMPSLYLGQ
STAFGAGASTFLVGGGSTLSPPGAAGVGAPGADVDGGGPDDLLPPFPPHT
APPFLSSSPVLQPWPRGLTGPTHALIPSTIIEGSEAGGCSTGTLDQSELK
K*
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Synonyms
Publications