NO01G04290, NO01G04290 (gene) Nannochloropsis oceanica

Overview
NameNO01G04290
Unique NameNO01G04290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1276
Alignment locationchr1:1148548..1149823 +

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Properties
Property NameValue
DescriptionBromodomain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1148548..1149823 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf
IPR027353NET_dom
IPR001487Bromodomain
Homology
BLAST of NO01G04290 vs. NCBI_GenBank
Match: XP_002286530.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96171.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 142.9 bits (359), Expect = 1.500e-30
Identity = 73/185 (39.46%), Postives = 104/185 (56.22%), Query Frame = 0
Query:   42 MYQLVQWLSNQKDVDAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDEN--------QPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVK 219
            M +LV     + D + F +PVD+K LGL DYPLV+  PMDLG +K +L    Y      A+DVRL+W NC  YN +GS  Y +A+ +A KFEEK                        + P+ EDKR F   +YKIT ++LG ++  L+ +C +AL K   +DE+EIN+D I+P+ F  L + V+
Sbjct:    8 MSKLVSQFYAKADAEPFREPVDYKALGLVDYPLVVKKPMDLGQVKKKLNESKYKSIHDAADDVRLIWKNCMTYNADGSDFYLLAQTMAKKFEEKXXXXXXXXXXXXXXXXXXXXXXXYEDPTPEDKRTFAKLLYKITKEELGNVITDLDAKCPKALVKNSAEDEVEINVDVISPKIFDELLSYVR 192          
BLAST of NO01G04290 vs. NCBI_GenBank
Match: XP_002906790.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY66191.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 141.7 bits (356), Expect = 3.300e-30
Identity = 77/185 (41.62%), Postives = 113/185 (61.08%), Query Frame = 0
Query:   41 KMYQLVQWLSNQKDVDAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPE-DENQP-PSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSLPE 224
            K   +V+     +  + F + V+W+  GL DY  V+  PMDLGTI+ +L    + K A+ A D+RLVW+NCK YNQ+GS LY +A++LA KFE++   +K +    P+ D++ P PSLE+K  F  N+YK+    LG IVQ L++QC +AL K    DE++I +D I  +TF  L   V   +PE
Sbjct:    8 KCTDVVEHFFKLESCEPFRERVNWEEWGLYDYLQVVKEPMDLGTIRSKLSKNEHKKPAEFARDMRLVWSNCKLYNQDGSDLYLLADELAKKFEDRVKSMKLDVGPVPKADKSIPAPSLEEKIYFSQNIYKVNPKDLGAIVQLLQEQCPKALDK-SSPDELDIVVDHIDNKTFRDLEKFVLEKVPE 191          
BLAST of NO01G04290 vs. NCBI_GenBank
Match: OWZ24201.1 (hypothetical protein PHMEG_000813 [Phytophthora megakarya])

HSP 1 Score: 141.7 bits (356), Expect = 3.300e-30
Identity = 76/170 (44.71%), Postives = 108/170 (63.53%), Query Frame = 0
Query:   56 DAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPE-DENQP-PSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSLPE 224
            + F + V+W+  GL DY  V+  PMDLGTI+ +L    Y K A+ A D+RLVW+NCK YNQ+GS LY +A++LA KFE++   +K +    P+ D++ P PSLE+K  F  N+YK+    LG +VQ LE+QC +AL K    DE++I +D I  +TF  L   V   +PE
Sbjct:   23 EPFRERVNWEEWGLYDYLQVVKEPMDLGTIRTKLSKNEYKKPAEFARDMRLVWSNCKLYNQDGSDLYLLADELAKKFEDRVKTMKLDVGPVPKADKSIPAPSLEEKIHFSQNIYKVNPKDLGAVVQLLEEQCPKALDK-SSPDELDIVVDHIDNKTFRDLEKFVIEKVPE 191          
BLAST of NO01G04290 vs. NCBI_GenBank
Match: OQS06969.1 (hypothetical protein THRCLA_01005 [Thraustotheca clavata])

HSP 1 Score: 140.6 bits (353), Expect = 7.400e-30
Identity = 72/188 (38.30%), Postives = 115/188 (61.17%), Query Frame = 0
Query:   36 DGGLSKM-YQLVQWLSNQKDVDAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDENQPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSLP 223
            DG   K+   +++     ++ + F + V+W+  GL DY  V+  PMD+GT++ +L  G Y K    A+D+RL+W+NCK YNQ+GS LY IA  L+  F+EK   +K ++    +  ++ PSLED+  F  ++YKI+S  LG +V+ L+++C +AL K    DE+++NID I  +TF  L   VK  +P
Sbjct:    2 DGETKKLCSDVLEEFFQMENSEPFRERVNWEEWGLYDYLQVVKVPMDMGTVRVKLNKGEYKKPEDFAKDMRLIWDNCKLYNQDGSDLYAIAHSLSKLFDEKMKHLKLDDGPPTKSSSRDPSLEDRIVFSQDIYKISSKDLGTVVEMLDERCPKALDK-QNSDELDLNIDAIDAKTFKELDTFVKECIP 188          
BLAST of NO01G04290 vs. NCBI_GenBank
Match: XP_008613176.1 (hypothetical protein SDRG_09043 [Saprolegnia diclina VS20] >EQC33536.1 hypothetical protein SDRG_09043 [Saprolegnia diclina VS20])

HSP 1 Score: 139.0 bits (349), Expect = 2.200e-29
Identity = 68/167 (40.72%), Postives = 106/167 (63.47%), Query Frame = 0
Query:   56 DAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDENQPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSLP 223
            + F + V+W+  GL DY  V+  PMD+G ++ +L  G Y K  + A+D+RL+W+NCK YNQ+GS LY +A  LA +F++K   +K ++    +  +  PSLED+  F  ++YKI+S  LG IV+ LE++C +AL K    DE+++NID I  +TF  +   VK  +P
Sbjct:   23 EPFRERVNWEEWGLYDYLQVVKTPMDMGAVRIKLNKGEYKKPEEFAKDMRLIWDNCKLYNQDGSELYAVAHSLAKQFDDKMKHLKLDDGPPSKSSSSDPSLEDRIVFSQDIYKISSKDLGTIVEMLEERCPKALDK-QTSDELDVNIDAIDAKTFKEIEVFVKECIP 188          
BLAST of NO01G04290 vs. NCBI_GenBank
Match: OQS01689.1 (hypothetical protein ACHHYP_00342 [Achlya hypogyna])

HSP 1 Score: 134.8 bits (338), Expect = 4.100e-28
Identity = 69/167 (41.32%), Postives = 103/167 (61.68%), Query Frame = 0
Query:   56 DAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDENQPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSLP 223
            + F + V+W+  GL DY  V+  PMD+G ++ +L  G Y K    A+D+RL+W+NCK YNQ+GS LY IA  L   F+EK   +K ++   P   +  PSLED+  F  ++YKI+S  LG IV+ +E++C +AL K    DEI++N+D I  +TF  +   VK  +P
Sbjct:   23 EPFRERVNWEEWGLYDYLQVVKTPMDMGAVRIKLNKGEYKKPEDFAKDMRLIWDNCKLYNQDGSELYAIAHSLTKLFDEKMKHLKLDDGP-PSKSSSDPSLEDRIVFSQDIYKISSKDLGTIVEMIEERCPKALDK-QNPDEIDLNVDAIDAKTFKEIDAFVKECVP 187          
BLAST of NO01G04290 vs. NCBI_GenBank
Match: OAO11998.1 (global transcription factor group E8 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 132.9 bits (333), Expect = 1.600e-27
Identity = 66/168 (39.29%), Postives = 103/168 (61.31%), Query Frame = 0
Query:   54 DVDAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDENQPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSL 222
            + +AFL PV WK   L DYP +I  PMDLGT+  RL +G Y    + A D+RL+W NC  YNQEG+ +Y   + L+  FEE++ K++   P+    E + P++E KR F   ++K++ +QL ++VQ L ++C   L K   ++ ++I +D I   TFHF+ + VK +L
Sbjct:   20 EAEAFLQPVPWKEWDLEDYPRIIKQPMDLGTVNKRLVNGEYKDIYEFAYDMRLIWRNCCTYNQEGAEVYTQGKMLSQVFEERFAKVEEMIPK----EEREPTIEMKRDFVDMLFKLSPEQLAKVVQILNERCPSCLDKT-NQELVDIIVDAIDNSTFHFVYDFVKKTL 182          
BLAST of NO01G04290 vs. NCBI_GenBank
Match: CCA14645.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 131.0 bits (328), Expect = 5.900e-27
Identity = 68/184 (36.96%), Postives = 108/184 (58.70%), Query Frame = 0
Query:   41 KMYQLVQWLSNQKDVDAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDEN-QPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSLPE 224
            K   ++ +  N +    F + V+W+  GL DY  V+  PMDLGTI+ +L  G Y+K A   +D+RLVW+NCK YNQ+GS LY +AE+L  KFE++   ++    +   D+   PP++E++     N+YK+ +  L  IV  LE+QC  AL +    DE++I ID I P+ F  +  L+  ++ +
Sbjct:    8 KCSDILDYFINLETTGPFRERVNWEEWGLYDYLQVVKVPMDLGTIRMKLSKGEYTKTADFLKDMRLVWDNCKLYNQDGSDLYILAEELGRKFEDRAKMMRLAGGQSRLDKTYAPPTVEERIVLSQNIYKVANKDLETIVNMLEEQCPRALDR-SSPDEVDIIIDSIEPKIFRTIEKLISETVSQ 190          
BLAST of NO01G04290 vs. NCBI_GenBank
Match: XP_008874404.1 (hypothetical protein H310_09958 [Aphanomyces invadans] >ETV97158.1 hypothetical protein H310_09958 [Aphanomyces invadans])

HSP 1 Score: 130.2 bits (326), Expect = 1.000e-26
Identity = 62/167 (37.13%), Postives = 104/167 (62.28%), Query Frame = 0
Query:   56 DAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDENQPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSLP 223
            + F + V+W+  GL DY  V+  PMD+GT++ +L  G Y K  +   D+RL+W+NCK YNQ+GS L+ +A++LA  F++K  ++K ++    +  +   +LE++  F  ++YKI+S  LG +V  LE+ C +AL K    DEIE+N+D I  + F  +   +K+ +P
Sbjct:   23 EPFRERVNWEEWGLYDYLQVVKTPMDMGTVRVKLNKGEYKKPEEFGRDMRLIWDNCKLYNQDGSDLWAVADELAKMFDDKMKELKLDDGSSSKSSSSDVTLEERIVFSQDIYKISSKDLGIVVDMLEELCPKALEK--NADEIELNVDAIDAKAFKEIDAFIKDCVP 187          
BLAST of NO01G04290 vs. NCBI_GenBank
Match: XP_012897388.1 (uncharacterized protein [Blastocystis hominis] >CBK23340.2 unnamed protein product [Blastocystis hominis])

HSP 1 Score: 128.6 bits (322), Expect = 2.900e-26
Identity = 69/177 (38.98%), Postives = 107/177 (60.45%), Query Frame = 0
Query:   45 LVQWLSNQKDVDAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDENQPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSL 222
            L ++L N  D   FL PV WK  GL DYP +I  PMDLGT+   L +G Y    + A D+RL+W NC  YNQE S +YK+ +KL+  FEE++ KI+ + PE   +    PS+E KR F  +++K+  ++L +++Q + ++C+ AL K    D ++I +D I   TF  + + V++ L
Sbjct:   12 LNEFLQN-PDSKPFLQPVLWKEWGLDDYPKIIRQPMDLGTVNMHLTNGDYKDVYEFAYDMRLIWRNCCTYNQEISDVYKVGKKLSELFEERFSKIEEQIPEAERE----PSIEQKRLFVDSLFKLPPNELAKVLQIINERCESALDKT-NPDLVDIIVDAIDIATFSVVNSYVQSCL 182          
The following BLAST results are available for this feature:
BLAST of NO01G04290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002286530.11.500e-3039.46predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002906790.13.300e-3041.62conserved hypothetical protein [Phytophthora infes... [more]
OWZ24201.13.300e-3044.71hypothetical protein PHMEG_000813 [Phytophthora me... [more]
OQS06969.17.400e-3038.30hypothetical protein THRCLA_01005 [Thraustotheca c... [more]
XP_008613176.12.200e-2940.72hypothetical protein SDRG_09043 [Saprolegnia dicli... [more]
OQS01689.14.100e-2841.32hypothetical protein ACHHYP_00342 [Achlya hypogyna... [more]
OAO11998.11.600e-2739.29global transcription factor group E8 [Blastocystis... [more]
CCA14645.15.900e-2736.96conserved hypothetical protein [Albugo laibachii N... [more]
XP_008874404.11.000e-2637.13hypothetical protein H310_09958 [Aphanomyces invad... [more]
XP_012897388.12.900e-2638.98uncharacterized protein [Blastocystis hominis] >CB... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007854NSK007854Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04290.1NO01G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|242751gene_446Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100028g33gene1268Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04290.1NO01G04290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04290 ID=NO01G04290|Name=NO01G04290|organism=Nannochloropsis oceanica|type=gene|length=1276bp
ATGGTTGAGATCAACACGACCGCCATTTCCACGACTTTATTGCAGAGgtc
atgtctgcaattcttgtggcttccgattatacattgatgcccttttgatt
tgtgtcaaaggcctgagaggttctcgctctcatcttccgcagaaaggcat
aaacccacagcgcaaactcccatgatcctcaccataccaccacacaggca
gtagcaggccagATCCAAGGTAGCCCATACGCAGAAGCAGCCTTCAGCCG
GAAGgtgagtgtagcggctccgctttttagcctccttcctcctgcgcatg
acaagcgaagaccgacgaaccaacattcctgcctccctccctaccctctt
ctccgattcccttccaatcctctcgctagACTCTCAACCATGGCGGACGG
CGGCCTGAGCAAGATGTACCAGCTGGTGCAGTGGTTGTCAAACCAAAAGG
ACGTTGACGCTTTCTTGGATCCGGTGGACTGGAAGACGCTGGGGCTGACT
GATTACCCTCTCGTGATTGCCCATCCCATGGACCTCGGCACCATCAAAGG
GCGGCTGGAGAGCGGGCATTATAGCAAGCATGCCCAGGTAGCGGAGGATG
TGCGGCTGGTCTGGAATAATTGCAAGGCGTACAACCAAGAAGGGTCTTAC
CTCTACAAAATCGCGGAAAAGCTCGCGGGGAAGTTTGAGGAGAAGTATGT
CAAGATTAAGACGGAAGAACCCGAAGGCCCGGAGGACGAGAACCAGCCAC
CGTCCTTGGAGGATAAGAGGCAGTTTCGCGCAAATATGTACAAGATTACT
TCGGACCAGCTGGGGGAGATCGTGCAGACGTTGGAGCAGCAGTGTCAAGA
AGCTCTAGCCAAGGTGGGGGGGAAGGACGAGATCGAGATAAATATTGATA
AAATTGCACCACGGACGTTTCACTTCCTGGCGAACCTGGTGAAGAATTCT
CTGCCAGAAAAGAAGgtgagggagtgaaaggatcgaggagcgctattcag
gggatgatggacgctccttctctgggcaagcctacttcctcgtagacaga
tcagatttccttgttcgcccacaaatgacgtgcactctttgtccatccct
tgaccatccaattacagGCAGCAGGGGCCAAGAAGCAAAAAAAATCGGGA
TCGGGCGCAGGGGGCGCAGCAGCAGCAGCAGCGGCATCAACTGCCGGTGG
GGCTGCGTCCGGTGGAGCGCCTATTTCGATGCCGCCTATGGCTGTCGGAG
GAGGAGGAGGTGGAGGGAGCGTTTAG
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protein sequence of NO01G04290.1

>NO01G04290.1-protein ID=NO01G04290.1-protein|Name=NO01G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MVEINTTAISTTLLQRSKVAHTQKQPSAGRLSTMADGGLSKMYQLVQWLS
NQKDVDAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQV
AEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDE
NQPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEI
NIDKIAPRTFHFLANLVKNSLPEKKAAGAKKQKKSGSGAGGAAAAAAAST
AGGAASGGAPISMPPMAVGGGGGGGSV*
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Synonyms
Publications