NO01G04290.1, NO01G04290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04290.1
Unique NameNO01G04290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length834
Alignment locationchr1:1148548..1149823 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1148548..1149823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04290.1 vs.
Match: XP_005854234.1 (bromodomain containing protein [Nannochloropsis gaditana CCMP526]; EKU22125.1 bromodomain containing protein [Nannochloropsis gaditana CCMP526]; EWM29357.1 bromodomain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 375.6 bits (963), Expect = 1.400e-100
Identity = 188/222 (84.68%), Postives = 204/222 (91.89%), Query Frame = 0
Query:   34 MADGGLSKMYQLVQWLSNQKDVDAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDENQPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSLPEKKAAGAKKQKKSGSGAGGAAAAAAASTAGGAA 256
            MADGGLSKMYQLVQWLSNQKDVDAFL+PVDWKTLGLTDYPLVI+ PMDLGTIKGRLESGHY+KHAQVAEDVRLVWNNCK YNQEGSYLYKIA+KLAGKFEEKY KIKTEEP+GPEDENQPPSLEDKRQFR NMY+ITSDQLGEIVQTLEQQC EA+AKVG +DEIEINIDK+APRTFHFLANL+KNSLP+KKA+ AKKQKK+ +G     A+ + S  G AA
Sbjct:    1 MADGGLSKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPDKKASAAKKQKKAAAGGAAPPASTSGSVPGSAA 222          
The following BLAST results are available for this feature:
BLAST of NO01G04290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854234.11.400e-10084.68bromodomain containing protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04290NO01G04290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04290.1NO01G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04290.1.cds1NO01G04290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04290.1.cds2NO01G04290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04290.1.cds3NO01G04290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04290.1.cds4NO01G04290.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04290.1 ID=NO01G04290.1|Name=NO01G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
ATGGTTGAGATCAACACGACCGCCATTTCCACGACTTTATTGCAGAGATC
CAAGGTAGCCCATACGCAGAAGCAGCCTTCAGCCGGAAGACTCTCAACCA
TGGCGGACGGCGGCCTGAGCAAGATGTACCAGCTGGTGCAGTGGTTGTCA
AACCAAAAGGACGTTGACGCTTTCTTGGATCCGGTGGACTGGAAGACGCT
GGGGCTGACTGATTACCCTCTCGTGATTGCCCATCCCATGGACCTCGGCA
CCATCAAAGGGCGGCTGGAGAGCGGGCATTATAGCAAGCATGCCCAGGTA
GCGGAGGATGTGCGGCTGGTCTGGAATAATTGCAAGGCGTACAACCAAGA
AGGGTCTTACCTCTACAAAATCGCGGAAAAGCTCGCGGGGAAGTTTGAGG
AGAAGTATGTCAAGATTAAGACGGAAGAACCCGAAGGCCCGGAGGACGAG
AACCAGCCACCGTCCTTGGAGGATAAGAGGCAGTTTCGCGCAAATATGTA
CAAGATTACTTCGGACCAGCTGGGGGAGATCGTGCAGACGTTGGAGCAGC
AGTGTCAAGAAGCTCTAGCCAAGGTGGGGGGGAAGGACGAGATCGAGATA
AATATTGATAAAATTGCACCACGGACGTTTCACTTCCTGGCGAACCTGGT
GAAGAATTCTCTGCCAGAAAAGAAGGCAGCAGGGGCCAAGAAGCAAAAAA
AATCGGGATCGGGCGCAGGGGGCGCAGCAGCAGCAGCAGCGGCATCAACT
GCCGGTGGGGCTGCGTCCGGTGGAGCGCCTATTTCGATGCCGCCTATGGC
TGTCGGAGGAGGAGGAGGTGGAGGGAGCGTTTAG
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protein sequence of NO01G04290.1

>NO01G04290.1-protein ID=NO01G04290.1-protein|Name=NO01G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MVEINTTAISTTLLQRSKVAHTQKQPSAGRLSTMADGGLSKMYQLVQWLS
NQKDVDAFLDPVDWKTLGLTDYPLVIAHPMDLGTIKGRLESGHYSKHAQV
AEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFEEKYVKIKTEEPEGPEDE
NQPPSLEDKRQFRANMYKITSDQLGEIVQTLEQQCQEALAKVGGKDEIEI
NIDKIAPRTFHFLANLVKNSLPEKKAAGAKKQKKSGSGAGGAAAAAAAST
AGGAASGGAPISMPPMAVGGGGGGGSV*
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mRNA from alignment at chr1:1148548..1149823+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04290.1 ID=NO01G04290.1|Name=NO01G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp|location=Sequence derived from alignment at chr1:1148548..1149823+ (Nannochloropsis oceanica)
ATGGTTGAGATCAACACGACCGCCATTTCCACGACTTTATTGCAGAGGTC ATGTCTGCAATTCTTGTGGCTTCCGATTATACATTGATGCCCTTTTGATT TGTGTCAAAGGCCTGAGAGGTTCTCGCTCTCATCTTCCGCAGAAAGGCAT AAACCCACAGCGCAAACTCCCATGATCCTCACCATACCACCACACAGGCA GTAGCAGGCCAGATCCAAGGTAGCCCATACGCAGAAGCAGCCTTCAGCCG GAAGGTGAGTGTAGCGGCTCCGCTTTTTAGCCTCCTTCCTCCTGCGCATG ACAAGCGAAGACCGACGAACCAACATTCCTGCCTCCCTCCCTACCCTCTT CTCCGATTCCCTTCCAATCCTCTCGCTAGACTCTCAACCATGGCGGACGG CGGCCTGAGCAAGATGTACCAGCTGGTGCAGTGGTTGTCAAACCAAAAGG ACGTTGACGCTTTCTTGGATCCGGTGGACTGGAAGACGCTGGGGCTGACT GATTACCCTCTCGTGATTGCCCATCCCATGGACCTCGGCACCATCAAAGG GCGGCTGGAGAGCGGGCATTATAGCAAGCATGCCCAGGTAGCGGAGGATG TGCGGCTGGTCTGGAATAATTGCAAGGCGTACAACCAAGAAGGGTCTTAC CTCTACAAAATCGCGGAAAAGCTCGCGGGGAAGTTTGAGGAGAAGTATGT CAAGATTAAGACGGAAGAACCCGAAGGCCCGGAGGACGAGAACCAGCCAC CGTCCTTGGAGGATAAGAGGCAGTTTCGCGCAAATATGTACAAGATTACT TCGGACCAGCTGGGGGAGATCGTGCAGACGTTGGAGCAGCAGTGTCAAGA AGCTCTAGCCAAGGTGGGGGGGAAGGACGAGATCGAGATAAATATTGATA AAATTGCACCACGGACGTTTCACTTCCTGGCGAACCTGGTGAAGAATTCT CTGCCAGAAAAGAAGGTGAGGGAGTGAAAGGATCGAGGAGCGCTATTCAG GGGATGATGGACGCTCCTTCTCTGGGCAAGCCTACTTCCTCGTAGACAGA TCAGATTTCCTTGTTCGCCCACAAATGACGTGCACTCTTTGTCCATCCCT TGACCATCCAATTACAGGCAGCAGGGGCCAAGAAGCAAAAAAAATCGGGA TCGGGCGCAGGGGGCGCAGCAGCAGCAGCAGCGGCATCAACTGCCGGTGG GGCTGCGTCCGGTGGAGCGCCTATTTCGATGCCGCCTATGGCTGTCGGAG GAGGAGGAGGTGGAGGGAGCGTTTAG
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Coding sequence (CDS) from alignment at chr1:1148548..1149823+

>NO01G04290.1 ID=NO01G04290.1|Name=NO01G04290.1|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at chr1:1148548..1149823+ (Nannochloropsis oceanica)
ATGGTTGAGATCAACACGACCGCCATTTCCACGACTTTATTGCAGAGATC
CAAGGTAGCCCATACGCAGAAGCAGCCTTCAGCCGGAAGACTCTCAACCA
TGGCGGACGGCGGCCTGAGCAAGATGTACCAGCTGGTGCAGTGGTTGTCA
AACCAAAAGGACGTTGACGCTTTCTTGGATCCGGTGGACTGGAAGACGCT
GGGGCTGACTGATTACCCTCTCGTGATTGCCCATCCCATGGACCTCGGCA
CCATCAAAGGGCGGCTGGAGAGCGGGCATTATAGCAAGCATGCCCAGGTA
GCGGAGGATGTGCGGCTGGTCTGGAATAATTGCAAGGCGTACAACCAAGA
AGGGTCTTACCTCTACAAAATCGCGGAAAAGCTCGCGGGGAAGTTTGAGG
AGAAGTATGTCAAGATTAAGACGGAAGAACCCGAAGGCCCGGAGGACGAG
AACCAGCCACCGTCCTTGGAGGATAAGAGGCAGTTTCGCGCAAATATGTA
CAAGATTACTTCGGACCAGCTGGGGGAGATCGTGCAGACGTTGGAGCAGC
AGTGTCAAGAAGCTCTAGCCAAGGTGGGGGGGAAGGACGAGATCGAGATA
AATATTGATAAAATTGCACCACGGACGTTTCACTTCCTGGCGAACCTGGT
GAAGAATTCTCTGCCAGAAAAGAAGGCAGCAGGGGCCAAGAAGCAAAAAA
AATCGGGATCGGGCGCAGGGGGCGCAGCAGCAGCAGCAGCGGCATCAACT
GCCGGTGGGGCTGCGTCCGGTGGAGCGCCTATTTCGATGCCGCCTATGGC
TGTCGGAGGAGGAGGAGGTGGAGGGAGCGTTTAG
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Synonyms
Publications