NO01G04020, NO01G04020 (gene) Nannochloropsis oceanica

Overview
NameNO01G04020
Unique NameNO01G04020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2127
Alignment locationchr1:1075443..1077569 -

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Properties
Property NameValue
DescriptionAcylaminoacyl peptidase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1075443..1077569 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011659PD40
Homology
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BLAST of NO01G04020 vs. NCBI_GenBank
Match: XP_005713701.1 (unnamed protein product [Chondrus crispus] >CDF33882.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 66.2 bits (160), Expect = 4.500e-7
Identity = 53/192 (27.60%), Postives = 87/192 (45.31%), Query Frame = 0 
Query:  472 LQDSVIFVMDNYLVAASVDGQYRK-NICRVQGFCTLAVSPNGKHIAVMEEDGATGFYQMSIISG-------RDATNPYG--------GTEYVQKTLPIQNVVASFYFSPDSQKLLLMVTTSPSHEFSVTRNTMNLGVSLTCKWDVYMLETGEVRSYGIFNPRPYQLKAFIPFFDQYRNSLSPWSPDSQAFCY 648
            LQD +I    + LV   VD   +K  + R  G     +SP+G  +A +  + ATG  ++++ +G        +  N +G            +  + P   V+A F++SPD +KLL + +   S           +G +   +W  +  +T  V  Y  F      +   + FFDQ+  S++PWSPDS AFCY
Sbjct:  182 LQDQII----SRLVMVDVDNPKKKRTLARFSGVMAFKLSPDGTALATLVTNPATGLDELTLCTGDFCPDSVENDVNAFGFRPPRQTDNDADIILSTPKTRVLA-FFWSPDGRKLLFLTSLRSS----------RVGAA---QWATFDRDTNRVVRYEKFVISGIYMHC-LNFFDQFGASMTPWSPDSDAFCY 354
The following BLAST results are available for this feature:
BLAST of NO01G04020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
XP_005713701.14.500e-727.60unnamed protein product [Chondrus crispus] >CDF338... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007890NSK007890Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04020.1NO01G04020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577257gene_415Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100205g8gene1292Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04020.1NO01G04020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04020 ID=NO01G04020|Name=NO01G04020|organism=Nannochloropsis oceanica|type=gene|length=2127bp
ATGACGCCCTCTACCAGCACTGCATCTTTCTCCGCTCCTTCAAGAACGGC
GTCTTTCCTTCTCGCCGCCGCCGCCGCCGCCTGCTGCGCCTCCTCCTCCC
TGGCGTACACCATGATGTCAACGGCCACCTACTCCCGCACCCGGCCCTCT
ATCAACCCGTACAACGCGGGGGGCAGCAGCGTTGACAGTGGCCGTCGCCC
CGGTGGGGTTGAGTACAACCCATTCCGGCCTCAGCCCAAGGGAGGGGTTG
GTGGCTCCCTGCCGCCTCTGCAGCAGGAGCTGCCTGAGCTGACGCCCCTG
CCGAAGCTTGCTTGTTCGATGGACAAGATCGATGAATACAGAGCGGAGGT
AGAGAAGGTGCAGGGTTTGATCCAGGAGGCTTTAAGAGAGGGAGATATGC
CCAAGGCTCGAGCATTGTATTATGGCCCGTTGCAGGACGCACTTACCATG
GACCCGCTGTATTCTCTGCAAACCAAGCTGGGCAAAGCAAAAGGGGGAAA
AGAAAAGGCATTTTTAAAGTCTTTGCGCGACCTGATGCAGCGTGGAAACA
CTCGGTTTATGATGGACACGAACCAGATTGCTGTTTTGCATAAGGGAGGC
AATGGGTTGGACCTTGTTGAAGGCCAGCTCAAATATCTGGGCCCTGCAAA
GAAGACAGTGGAGACAAAATGGAAGCCTGAGAGTCTGGCCAGCATGTTGG
AGGAGGTGGCGGAGGAAATTGCGACCCGTCCTCCCCCTGTCCCGAGCACC
AGCACGGGCTTTGGGGGCCGGCAGCGTAAGAATGTGCCGGGAGGGAATGC
TGCTGCTGCTGCTGCGGCGGCGGCGGCGGCAGCGACGAATCAGGGGTCGG
CTGCATCGAGCGCGGGGTCAAGCGAGATGCCGTATGCGGCACAAGGGGAA
CCAGGAACATCGGGCGGAACGCCCGGGGATGCGACACAGAAGCAGTTCCA
GATGCCGACTTGGAGCCCCGATGGACAGTTCTTGGCGTTTACGGAGTTGT
ATTTGAATGCGAATGGAGTAGACACTTGTTGTTTGGTTGTGTATGACGTG
CGGCTCGGGCGGGAAGTGGCACGGAAGACGTTGCCCAACGCCCCGCATAT
GATCCAGTTTATGCCTGATTCGGACACGATAATTTACCTGCAGAACCAGC
ACGACAACATCTCGTTGTGTTCCATGGTGTCGGTCCGTGAGCTCCGGTCA
GGCCACGAACAAGAACGCGTGATTGACGAGGGGATGCCCCTGTTTTTCGC
CACGAGCAAGTATAATTCGGCCCGGTACTCCCTGGTGATGAATAATGGGA
AGAGGAATGGCCTGTACCGTTATTTGGGGGATATGACTTTACCTCGCAAG
GCCTGGAAGCAGCTGGCGACGCACGAGCGGAAGTTCAGGTCGCCAGAAGT
GGCCAGCACGGGTTTACAGGACAGTGTGATCTTCGTAATGGACAATTACC
TTGTCGCTGCGAGTGTGGACGGGCAGTATAGGAAGAACATCTGTCGGGTG
CAGGGGTTTTGCACCCTTGCCGTGAGTCCGAATGGGAAGCATATCGCGGT
AATGGAGGAAGACGGTGCCACCGGGTTCTATCAGATGTCCATCATCTCGG
GACGGGATGCGACGAACCCATATGGAGGCACCGAATACGTGCAGAAGACG
TTGCCGATTCAGAATGTGGTGGCCTCGTTTTATTTCTCGCCCGACAGTCA
AAAGCTTTTGTTGATGGTGACCACAAGCCCAAGCCATGAGTTTAGCGTGA
CGCGGAACACGATGAATCTGGGGGTTTCCCTGACGTGCAAGTGGGACGTG
TACATGCTTGAGACCGGGGAGGTTCGCTCTTATGGCATCTTTAACCCGCG
TCCTTACCAACTGAAAGCCTTCATCCCGTTTTTCGACCAGTATCGAAATT
CACTTTCACCCTGGTCGCCAGATTCGCAGGCGTTCTGCTACTGCCAGCGG
GAGGGGGCATTCATTCAGCGACTGCAGAAGACGGCGGTGCCCGAGGGGTT
GAAGAAGGAGATGGATAGGATCAGAAGGGGAAAGCCCGGACTTATTTTCC
TACCTGATATCGACGATCAGTCTTCCGCGTACGCCCTCGGCGCCGATTTA
GAGGTGTTAACATGGTCGTGGAATTAA
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protein sequence of NO01G04020.1

>NO01G04020.1-protein ID=NO01G04020.1-protein|Name=NO01G04020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=709bp
MTPSTSTASFSAPSRTASFLLAAAAAACCASSSLAYTMMSTATYSRTRPS
INPYNAGGSSVDSGRRPGGVEYNPFRPQPKGGVGGSLPPLQQELPELTPL
PKLACSMDKIDEYRAEVEKVQGLIQEALREGDMPKARALYYGPLQDALTM
DPLYSLQTKLGKAKGGKEKAFLKSLRDLMQRGNTRFMMDTNQIAVLHKGG
NGLDLVEGQLKYLGPAKKTVETKWKPESLASMLEEVAEEIATRPPPVPST
STGFGGRQRKNVPGGNAAAAAAAAAAAATNQGSAASSAGSSEMPYAAQGE
PGTSGGTPGDATQKQFQMPTWSPDGQFLAFTELYLNANGVDTCCLVVYDV
RLGREVARKTLPNAPHMIQFMPDSDTIIYLQNQHDNISLCSMVSVRELRS
GHEQERVIDEGMPLFFATSKYNSARYSLVMNNGKRNGLYRYLGDMTLPRK
AWKQLATHERKFRSPEVASTGLQDSVIFVMDNYLVAASVDGQYRKNICRV
QGFCTLAVSPNGKHIAVMEEDGATGFYQMSIISGRDATNPYGGTEYVQKT
LPIQNVVASFYFSPDSQKLLLMVTTSPSHEFSVTRNTMNLGVSLTCKWDV
YMLETGEVRSYGIFNPRPYQLKAFIPFFDQYRNSLSPWSPDSQAFCYCQR
EGAFIQRLQKTAVPEGLKKEMDRIRRGKPGLIFLPDIDDQSSAYALGADL
EVLTWSWN*
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Synonyms
Publications