NO01G03950, NO01G03950 (gene) Nannochloropsis oceanica

Overview
NameNO01G03950
Unique NameNO01G03950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2696
Alignment locationchr1:1052473..1055168 -

Link to JBrowse

Properties
Property NameValue
DescriptionPyruvate dehydrogenase E1 component subunit alpha
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1052473..1055168 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
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BLAST of NO01G03950 vs. NCBI_GenBank
Match: EWM29330.1 (pyruvate dehydrogenase e1 component alpha subunit [Nannochloropsis gaditana])

HSP 1 Score: 736.9 bits (1901), Expect = 6.900e-209
Identity = 378/619 (61.07%), Postives = 465/619 (75.12%), Query Frame = 0 
Query:    1 MSARKINPFKGTNVLHRLRAKARTGMKAPGWIMAAMTAIPPGTLPAQPSKIPKLVLPTDRLLAGYERRFPETSDEVVRTVDGLLVNRSMVFVQKQHDFIKQGHTEAEAFKLTEKALVEEEGRALKQLEEMTAEARAKGAVPALSAIEREREGDSRWERLQFWRKELGESPYESWSHGKRASLDRWLTKDLLGWAPHQTRYLGQNRFMVHLQAVRELIFADVQAPLKQRLR---EGVGMGLTEKELFGLRYETAMGEYREWEGRLRARRWGDWGKEQVEELHEWVDENYGMVLAGVEDAWPQVEGGVTDVERKAARRQVLMVMAFPLLRPEMQGVPYLSRHLTKAFLEVSRYEACAGLRPIVSSSGPLGKAKACYATGESMLSDAMPKLVVKSFVTLALERPFAWQLLRYLLVYRISNAPSVAALEGLPELRGMGGRGEIAKRVEGQWKNLTEILMTLAANDDTSGLSQDIEMAYEGINELHRVAQELLFLGAEG----EGGREGGHSFVDREIDAYIAEHHGWVDEDLAIGEVLRRYDATVDGMFGAGIPPAHKAEVARVEKRESEVLESARLDFAFSKREGSRMAWEMAEGMQEVDAYDREWLTR--------RRGEE 605
            MSARKINPFK TNVLHRLRAKARTG K+PGW+MAA+TAIPP T P QP  +P LVLPTDRLL GYER+FPE   +VVR+VDG LVNRSMVFVQKQ+ FI++GH+EAEAFKLTE AL EEEG+ALKQLEE+TA+ARA GA+PALSA+ER+++G  RW+RLQFWRKEL  SPYE+WSHGK+ASLDRWLTKD+L W PHQTRYLGQ RF   L+A RE IFAD+  PL+++LR      G  LT ++L+  + E A+GEY+EWE ++ AR+ G WG E++  L EW++ N+ +V+ G +D  PQV GG  D  R+ AR QVL  +AFPLLRPE Q +PYLSR+L +AF EV++ EA  GLRPI+  SGPLG+ +A +A GE+ML+DA+PKLVVK+FVT+A+ERPFAW+L+R LL  RI  A S A LE LPELRG+GGR  +A+ VEG  ++LTE+LMTLAA++DTSGL QDI++AY  +NELHRVAQELL  G  G                     Y  EHHGWV EDLAIGE LR++D  V+ MFG G+P AHKA+ A VE+++S+VLE A  DFAF KRE  R AWE + G+ EVD YD+ WL R         RGEE
Sbjct:    1 MSARKINPFKDTNVLHRLRAKARTGFKSPGWVMAAVTAIPPCTPPPQPRTVPNLVLPTDRLLVGYERKFPEAMQDVVRSVDGRLVNRSMVFVQKQYAFIQEGHSEAEAFKLTEAALAEEEGKALKQLEEVTAQARATGAIPALSAMERQKDG--RWDRLQFWRKELSSSPYETWSHGKQASLDRWLTKDMLEWEPHQTRYLGQQRFQDSLKAARETIFADIVKPLREKLRTAESAAGTALTPEDLYSFQLEQAVGEYQEWEEKMLARQAGTWGSEEIAALQEWLERNHALVMPGFQDPRPQVAGGFADQARRHARGQVLQYIAFPLLRPEFQSIPYLSRYLARAFAEVAKQEAGRGLRPIL-ISGPLGRREADFAAGEAMLNDALPKLVVKTFVTVAVERPFAWELMRCLLTERIRTAASAADLETLPELRGLGGREAMAQHVEGLIQHLTEVLMTLAADEDTSGLGQDIDVAYGAVNELHRVAQELLHAGEAGXXXXXXXXXXXXXXXXXXXXXYKQEHHGWVAEDLAIGEALRKFDPKVEAMFGVGVPEAHKAQEAAVERKQSQVLEEAGRDFAFRKREAGRWAWERSVGLGEVDEYDKRWLRRPQKGRVAAERGEE 616
The following BLAST results are available for this feature:
BLAST of NO01G03950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29330.16.900e-20961.07pyruvate dehydrogenase e1 component alpha subunit ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007900NSK007900Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03950.1NO01G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577238gene_406Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03950.1NO01G03950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03950 ID=NO01G03950|Name=NO01G03950|organism=Nannochloropsis oceanica|type=gene|length=2696bp
ACAGGCCAACAAATATATTCCCTAACATTCTGAGTCTGTTTTTTTTTACT
TCCGGGCGTCGCAGCTTTTCGACTCAAGTCAATACCAAAGGGCCCAGGAT
ACGTAACATCGTCGTATAATAGCATCATCAGTCCTCCAGCATGTCGGCCC
GCAAAATCAATCCTTTCAAGGGCACCAACGTGCTGCACCGGCTCCGGGCC
AAGGCCCGCACGGGCATGAAGGCGCCGGGTTGGATCATGGCGGCTATGAC
TGCGATTCCTCCTGGAACGCTGCCCGCCCAACCCAGCAAGgtatgtgaaa
agaagtagaacaagtccgtgcgcgtcataacattcgtgctgcaaccactt
aactcactccctgctgaatacacaaatgctattctctttctctttcctca
gATCCCGAAGCTGGTGCTGCCGACCGACCGTCTTCTGGCCGGATATGAAC
GTCGCTTCCCCGAGACGAGCGACGAGGTAGTACGGACAGTGGACGGCTTG
CTCGTGAACCGCAGCATGGTCTTCGTCCAAAAACAGCATGACTTCATCAA
GCAAGGCCATACGGAAGCTGAGGCGTTCAAGTTGACCGAAAAGGCCCTGG
TGGAAGAAGAGGGCCGCGCCCTGAAACAACTAGAGGAGATGACAGCAGAG
GCTAGGGCCAAGGGGGCGGTGCCTGCGCTCAGTGCCATTGAAAGAGAACG
AGAAGGGGACAGCCGTTGGGAGCGCCTGCAATTTTGGCGGAAAGAGCTAG
GAGAGTCGCCTTATGAGAGCTGGTCGCATGGAAAGCGGGCGTCGTTGGAT
AGGTGGCTGACAAAGGACCTCTTGGGGTGGGCGCCGCACCAGACCCGCTA
CCTGGGACAGAATCGTTTTATGGTTCATCTGCAGGCGGTGCGAGAGCTAA
TTTTCGCGGATGTGCAGGCACCACTGAAGCAGAGGTTACGAGAGGGAGTG
GGGATGGGTTTGACGGAGAAGGAGCTGTTTGGATTGCGGTATGAGACGGC
GATGGGTGAGTACAGGGAATGGGAGGGGAGGTTGAGGGCGAGGAGGTGGG
GGGACTGGGGGAAGGAGCAGGTGGAAGAATTGCACGAGTGGGTGGATGAG
AATTATGGCATGGTTTTGGCGGGTGTGGAAGATGCGTGGCCGCAGGTGGA
GGGGGGTGTGACGGATGTGGAACGGAAAGCGGCGAGAAGGCAGGTGTTGA
TGGTAATGGCCTTCCCCCTCTTGAGGCCGGAGATGCAGGGTGTGCCCTAC
CTCAGTCGGCATCTGACCAAGGCCTTCTTGGAAGTGAGCAGATATGAGGC
GTGTGCGGGGTTACGGCCTATCGTGAGCAGCTCGGGGCCATTGGGGAAGG
CGAAGGCCTGCTATGCAACGGGAGAAAGCATGCTGAGTGACGCGATGCCC
AAGCTGGTGGTGAAGAGCTTCGTCACCCTTGCCTTAGAGAGGCCATTCGC
CTGGCAGCTGCTGCGGTACTTGTTGGTCTATCGTATCTCAAACGCCCCGT
CCGTGGCGGCACTTGAGGGCTTGCCGGAATTGCGGGGAATGGGAGGGCGG
GGGGAGATTGCGAAGCGTGTGGAGGGACAGTGGAAGAATCTGACCGAAAT
TCTAATGACACTGGCAGCGAATGACGACACTTCGGGCCTGAGCCAGGATA
TAGAGATGGCATATGAGGGAATTAACGAGCTGCACCGTGTGGCTCAGGAG
TTGTTGTTTTTGGGAGCGGAGGGCGAAGGCGGGAGGGAGGGAGGGCATTC
CTTTGTGGATCGGGAGATCGATGCGTATATTGCTGAGCACCACGGGTGGG
TGGATGAGGACCTGGCAATTGGTGAGGTTTTAAGACGGTATGATGCAACT
GTTGATGGGATGTTTGGCGCTGGTATCCCCCCGGCACACAAGGCTGAGGT
GGCTCGGGTGGAGAAGAGAGAGAGTGAGGTCCTGGAGAGCGCCAGGTTGG
ATTTCGCGTTTAGCAAAAGGGAGGGGAGTAGGATGGCTTGGGAGATGGCG
GAGGGCATGCAGGAGGTGGATGCTTATGACAGGGAGTGGTTGACACGTAG
GAGGGGGGAGGAAGGGGATGAGGGGAGGGAGGAAGCGGTGAATGGGGAGG
ATTGGGAGGAATGGCGATTGGAATTGAAGGCGTCGGGGATCAAGACGGCG
GAGGAGGAGGAGGAGGAGGAGAACAAGAAGAAGGCGGCGAAAGAGGCCAA
GTCAATGGAAGCTGGGCGTGGTGCTTATGAACCACGAGGGGAGTGGCAGT
GGGGAGGGAGTAGAGGAGGGAGGAGGGAGAGCGGTCGAGGCGGACGTGGT
GGTTGGGACCGCTCTGGTGTTGAAGGAAGGGATCGTGACGGACAGTATGG
TAGGTCTGGGCGAGGAGCAGGTGGTATAGGAAGGGAATATGACCGGCGTG
CTAGTGGGGCTGGGACTGGAGGCAGCAGCAGTTTTGCGGATCGGAATCGA
TTTGCGTCGCCGACAGGTGGAGGGGGGCAGAGGTGGCCGTCTTCGGATAG
TAATAATACAGGGAAGACGGAAAGAAGCGCTGGCGGTGCTGGCTCTGGAG
CATTTGGGCGAGGAGGAGGAGGGAGCAAGAGGGGTGGCGGGGTAGGAGGT
CGGGGGGGAGGAGAGAGAGGTGGGATGGGTGGGGTACGAGGACGAGGTCG
TGGGATCGGCGGGGGAAGGACAGGAGGAGAGAACAGGAGTGACTAG
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protein sequence of NO01G03950.1

>NO01G03950.1-protein ID=NO01G03950.1-protein|Name=NO01G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=815bp
MSARKINPFKGTNVLHRLRAKARTGMKAPGWIMAAMTAIPPGTLPAQPSK
IPKLVLPTDRLLAGYERRFPETSDEVVRTVDGLLVNRSMVFVQKQHDFIK
QGHTEAEAFKLTEKALVEEEGRALKQLEEMTAEARAKGAVPALSAIERER
EGDSRWERLQFWRKELGESPYESWSHGKRASLDRWLTKDLLGWAPHQTRY
LGQNRFMVHLQAVRELIFADVQAPLKQRLREGVGMGLTEKELFGLRYETA
MGEYREWEGRLRARRWGDWGKEQVEELHEWVDENYGMVLAGVEDAWPQVE
GGVTDVERKAARRQVLMVMAFPLLRPEMQGVPYLSRHLTKAFLEVSRYEA
CAGLRPIVSSSGPLGKAKACYATGESMLSDAMPKLVVKSFVTLALERPFA
WQLLRYLLVYRISNAPSVAALEGLPELRGMGGRGEIAKRVEGQWKNLTEI
LMTLAANDDTSGLSQDIEMAYEGINELHRVAQELLFLGAEGEGGREGGHS
FVDREIDAYIAEHHGWVDEDLAIGEVLRRYDATVDGMFGAGIPPAHKAEV
ARVEKRESEVLESARLDFAFSKREGSRMAWEMAEGMQEVDAYDREWLTRR
RGEEGDEGREEAVNGEDWEEWRLELKASGIKTAEEEEEEENKKKAAKEAK
SMEAGRGAYEPRGEWQWGGSRGGRRESGRGGRGGWDRSGVEGRDRDGQYG
RSGRGAGGIGREYDRRASGAGTGGSSSFADRNRFASPTGGGGQRWPSSDS
NNTGKTERSAGGAGSGAFGRGGGGSKRGGGVGGRGGGERGGMGGVRGRGR
GIGGGRTGGENRSD*
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Synonyms
Publications