NO01G03930, NO01G03930 (gene) Nannochloropsis oceanica

Overview
NameNO01G03930
Unique NameNO01G03930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1457
Alignment locationchr1:1049084..1050540 +

Link to JBrowse

Properties
Property NameValue
DescriptionAdhesion regulating molecule 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1049084..1050540 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR00677326S_Psome_Ubiquitin-recp_Rpn13
IPR032368RPN13_C
Homology
BLAST of NO01G03930 vs. NCBI_GenBank
Match: CBJ30752.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 96.3 bits (238), Expect = 2.100e-16
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 0
Query:  213 MMNLTGMXXXXXXXXTVPLTEIVNADEVLRSGVLSDPAVQEQLIPLLAEGQQTPEQLEAIMHSPQFRSTLGSLTGALQTDNFNSIMSNFGLDAS--RGMEALSAGNNVDAFLQAL 326
            MMN+ G+         + L + V+AD +  SG L DP VQE L+PLL EG QT E+L   + SPQ + +L SL+ AL++DNFN+IMS+F LD S  R  EA++ G+ V+AF+QAL
Sbjct:    1 MMNIAGL-APQRRQPALSLRDAVDADAIEASGFLDDPEVQEALLPLLPEGNQTAEELRETIRSPQLQQSLSSLSRALRSDNFNNIMSSFELDPSNPRSAEAMARGDGVEAFVQAL 114          
BLAST of NO01G03930 vs. NCBI_GenBank
Match: GAY03270.1 (proteasomal ubiquitin receptor ADRM1like protein put [Pythium insidiosum])

HSP 1 Score: 96.3 bits (238), Expect = 2.100e-16
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 0
Query:    4 FFGSFVPTTREYVTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHVDELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQYQ 98
            F GS      E V+F AG+  V+   N KFL+TPD +KG++ L +  D+L H QW DR T    +D I  P DA F++VNTGRE DRVY+LQY+
Sbjct:   12 FGGSNGAGRNELVSFNAGKMTVKPSANGKFLVTPDLKKGKICLTRGDDQLLHFQWVDRQTGASPDDFILFPDDAAFSKVNTGREGDRVYLLQYK 105          
BLAST of NO01G03930 vs. NCBI_GenBank
Match: POM63091.1 (Proteasomal ubiquitin receptor ADRM1-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 94.7 bits (234), Expect = 6.000e-16
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 0
Query:    9 VPTTREYVTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHVDELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQYQ 98
            +P   E V+F AG+  V+   N KFL+TP   KG++ L +  D+L H QW DR T    ED I  P DA+FA+V+TGR  DRVYILQY+
Sbjct:    1 MPEQNELVSFNAGKMTVKPSANGKFLVTPQLEKGKVCLSRGDDQLLHFQWVDRQTGASPEDFIIFPDDAHFAKVDTGRPDDRVYILQYK 89          
BLAST of NO01G03930 vs. NCBI_GenBank
Match: KUF80692.1 (Proteasomal ubiquitin receptor ADRM1 [Phytophthora nicotianae])

HSP 1 Score: 94.4 bits (233), Expect = 7.800e-16
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 0
Query:    3 RFFGSFVPTT---REYVTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHVDELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQYQ 98
            +F   F P+T    E V+F AG+  V+   N KFL+TP   KG++ L +  D+L H QW DR T    ED I  P DA+FA+V+TGR  DRVYILQY+
Sbjct:    8 QFGNVFAPSTAGRNELVSFNAGKMTVKPTANGKFLVTPQLEKGKVCLSRGDDQLLHFQWVDRQTGASPEDFIIFPDDAHFAKVDTGRPDDRVYILQYK 105          
BLAST of NO01G03930 vs. NCBI_GenBank
Match: GAY03274.1 (proteasomal ubiquitin receptor ADRM1like protein put [Pythium insidiosum])

HSP 1 Score: 94.4 bits (233), Expect = 7.800e-16
Identity = 153/452 (33.85%), Postives = 197/452 (43.58%), Query Frame = 0
Query:    4 FFGSFVPTTREYVTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHVDELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQYQ------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQTRVPG------PSAAVTXXXXXXXXXXXTGR----------------------GGQLTAADLQRAMMNLTGMXXXXXXXXTVPLTEIVNADEVLRSGVLSDPAVQEQLIPLLAEGQQTPEQLEAIMHSPQFRSTLGSLTGALQTDNFNSIMSNFGLDASRGMEALSAGNNVDAFLQAL 326
            F GS      E V+F AG+  V+   N KFL+TPD +KG++ L +  D+L H QW DR T    +D I  P DA F++VNTGRE DRVY+LQY+                                                                                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                  ++  PG      P+A V+   XXXXXXXX                          G +T AD QRAM +L  M         V LT++++A+ V  + +L D A    L+P L EG Q   +L+  + SPQFR ++GSL  ALQT N++++++NFGLD + G   L+ G++V AFL A+
Sbjct:   12 FGGSNGAGRNELVSFNAGKMTVKPSANGKFLVTPDLKKGKICLTRGDDQLLHFQWVDRQTGASPDDFILFPDDAAFSKVNTGREGDRVYLLQYKNSSRRFFFWMQHKDASRDEELAKKVNDYMNNAQPAGADGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTEEELLRLAIEESMRDANPNTGNSSSDNDYSGGRSDAPGSRAAQAPAAVVSPQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGAITTADFQRAMASLQAMMGQQQPKG-VSLTKLLSAENV--APLLQDEAAVNALLPHLPEGVQNAFELQQTLRSPQFRQSIGSLVSALQTGNYHAVITNFGLDPAAGAAKLTYGDSVGAFLDAI 460          
BLAST of NO01G03930 vs. NCBI_GenBank
Match: OWZ07961.1 (Proteasomal ubiquitin receptor ADRM1, partial [Phytophthora megakarya])

HSP 1 Score: 91.7 bits (226), Expect = 5.100e-15
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0
Query:   14 EYVTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHVDELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQYQ 98
            E V+F AG+  V+   N KFL+TP   KG++ L +  D+L H QW DR T    ED I  P DA+FA+V+TGR  DRVYILQY+
Sbjct:   22 ELVSFNAGKMSVKASANGKFLVTPQLEKGKVCLSRGDDQLLHFQWMDRQTGASPEDFIIFPDDAHFAKVDTGRVDDRVYILQYK 105          
BLAST of NO01G03930 vs. NCBI_GenBank
Match: CBJ30753.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.9 bits (224), Expect = 8.600e-15
Identity = 40/81 (49.38%), Postives = 60/81 (74.07%), Query Frame = 0
Query:   16 VTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHV-DELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQ 96
            ++FKAG+ DV DKG  KF ITPD RKG ++L K   D+L H  WK+R + TVV+D+I +P +A + +V+TGRE +RV++++
Sbjct:   23 LSFKAGKMDVSDKGGEKFHITPDLRKGTISLFKGPDDQLMHFAWKERPSGTVVDDIIILPEEAVYKKVDTGREGERVFLME 103          
BLAST of NO01G03930 vs. NCBI_GenBank
Match: XP_009535166.1 (hypothetical protein PHYSODRAFT_564524, partial [Phytophthora sojae] >EGZ10305.1 hypothetical protein PHYSODRAFT_564524, partial [Phytophthora sojae])

HSP 1 Score: 90.5 bits (223), Expect = 1.100e-14
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 0
Query:   14 EYVTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHVDELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQYQ 98
            E V+F AG+  V+   N KFL+TP   KG++ L +  D+L H QW DR T    ED I  P DA+FA+V+TGR +DRV+ILQY+
Sbjct:   22 ELVSFNAGKMTVKPTANGKFLVTPQLEKGKVCLSRGDDQLLHFQWVDRQTGASPEDFIIFPDDAHFAKVDTGRPEDRVFILQYK 105          
BLAST of NO01G03930 vs. NCBI_GenBank
Match: OWY97004.1 (Proteasomal ubiquitin receptor ADRM1, partial [Phytophthora megakarya])

HSP 1 Score: 89.7 bits (221), Expect = 1.900e-14
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 0
Query:  208 DLQRAMMNLTGMXXXXXXXXTVPLTEIVNADEVLRSGVLSDPAVQEQLIPLLAEGQQTPEQLEAIMHSPQFRSTLGSLTGALQTDNFNSIMSNFGLDASRGMEALSAGNNVDAFLQALLA 328
            DLQRAM +   +         V L+++++A+ +  S +L DPA  E L+  L EG QTP +L A + SPQ R ++GSL  ALQT NFN++M+NFGLD S G   L+ G+ V A L A+ A
Sbjct:   77 DLQRAMASFQQL----TQPKPVSLSKLLSAENM--SIILDDPACVEALVQHLPEGSQTPAELRATLRSPQLRQSIGSLVSALQTGNFNAVMANFGLDPSAGAAKLAFGDGVGALLAAIQA 190          
BLAST of NO01G03930 vs. NCBI_GenBank
Match: XP_008899958.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI54618.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK94492.1 hypothetical protein, variant [Phytophthora parasitica] >ETL47868.1 hypothetical protein, variant [Phytophthora parasitica] >ETM00979.1 hypothetical protein, variant [Phytophthora parasitica] >ETM54155.1 hypothetical protein, variant [Phytophthora parasitica] >ETN15247.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETP24461.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP52409.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-14
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0
Query:  229 VPLTEIVNADEVLRSGVLSDPAVQEQLIPLLAEGQQTPEQLEAIMHSPQFRSTLGSLTGALQTDNFNSIMSNFGLDASRGMEALSAGNNVDAFLQALLA 328
            V LT++++AD +    +L DPA  E L+  L EG QTP +L A + SPQ R ++GSL  ALQT NFN++M+NFGLD S G   L+ G+ V A L A+ A
Sbjct:  205 VALTKLLSADNL--GSILDDPASVEALLQHLPEGSQTPAELRATLRSPQLRQSIGSLVNALQTGNFNAVMANFGLDPSAGASKLAFGDGVGALLAAIQA 301          
The following BLAST results are available for this feature:
BLAST of NO01G03930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ30752.12.100e-1647.83conserved unknown protein [Ectocarpus siliculosus][more]
GAY03270.12.100e-1648.94proteasomal ubiquitin receptor ADRM1like protein p... [more]
POM63091.16.000e-1649.44Proteasomal ubiquitin receptor ADRM1-like protein ... [more]
KUF80692.17.800e-1647.96Proteasomal ubiquitin receptor ADRM1 [Phytophthora... [more]
GAY03274.17.800e-1633.85proteasomal ubiquitin receptor ADRM1like protein p... [more]
OWZ07961.15.100e-1551.19Proteasomal ubiquitin receptor ADRM1, partial [Phy... [more]
CBJ30753.18.600e-1549.38conserved unknown protein [Ectocarpus siliculosus][more]
XP_009535166.11.100e-1450.00hypothetical protein PHYSODRAFT_564524, partial [P... [more]
OWY97004.11.900e-1444.17Proteasomal ubiquitin receptor ADRM1, partial [Phy... [more]
XP_008899958.12.500e-1448.48hypothetical protein, variant [Phytophthora parasi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007902NSK007902Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03930.1NO01G03930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627870gene_404Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g5gene1302Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03930.1NO01G03930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03930 ID=NO01G03930|Name=NO01G03930|organism=Nannochloropsis oceanica|type=gene|length=1457bp
CCCGAAGTCATTCATGTTCTCCGCAAAACTCTTCCCCCTACTAACATAGA
CTCTATCAGCTGCAGCAGCGGTAGCAGTAGCAGCGGCCACAGGATGGAGC
GATTTTTTGGCAGCTTTGTCCCCACGACGCGCGAGgtaagttttgctcgc
gttcctctcccttcctcctcgcctctctctctctctctctgtctctctat
ctctcacccccatcctcctcatacctcacaacctaatcctgccacctaca
gTACGTGACGTTCAAGGCTGGGAGGTGCGATGTGGAAGATAAGGGCAATA
ACAAGTTTCTGATCACGCCGGACCGGCGCAAGGGCCAACTGACCCTCCTC
AAGCACGTTGACGAGCTCACGCACCTGCAGTGGAAAGACCGGACAACCAA
CACAGTAGTTGAGGATGTGATTGCCATGCCCCACGACGCCTACTTTGCCC
GGGTCAACACGGGCCGGGAAAAAGATCGCGTGTACATCTTGCAATATCAG
GGGGGTTCCTCCCGTCGCTTCTTCTTCTGGATGCAAAGCGCATCAGATGA
GAAGGACGAAGAGCTTGTGAAGCGCCTGAACGAATGCATGACCAACCCTC
CCCCCAGTGAGGCGGAGGAAGGTGGCGCCGGTGGGACAGGTGCCGCGGGA
GGTACGGGAGATGCGCCGGCTTCGCAGCAAAATGTGGAAGACCTGCTTTC
GTCCATGCTGGGGGGCGGGACCACGGGGGCCCAGACCCGCGTGCCCGGCC
CGTCGGCTGCGGTAACGGCTCCCGCATCTGGTAGCAGCAGCGCCGGCGCC
ACAGGACGTGGAGGGCAACTGACTGCGGCGGATTTGCAGCGCGCCATGAT
GAATCTGACGGGCATGCAGCAGCAGCAGCAGCAGCAGCGGACGGTGCCCT
TGACCGAGATTGTCAACGCGGATGAAGTGCTCCGTTCGGGCGTGCTTTCC
GACCCGGCGGTGCAAGAACAGCTGATTCCCTTGTTGGCGGAGGGGCAGCA
GACACCGGAGCAGCTGGAGGCGATCATGCATAGCCCTCAATTCAGGTCGA
CTCTGGGAAGCTTGACGGGGGCGTTGCAAACGGATAATTTCAATTCTATT
ATGAGTAATTTTGGCTTGGACGCAAGCAGAGGGATGGAGGCCCTGTCGGC
GGGGAATAACGTGGACGCGTTTTTGCAGGCGTTGTTGGCGTTGCAGCAGC
AGGAGGGAGAGGCCGGGGACCGGGGTGAGGGGGGTGAGAAGATGGAGGAG
GAGAAGGATGAGGGGAAAGAGTAAAAGGAGAAGGGCTCTGGCCTGTGCCC
TCGGAATATGGGAAGGGAGGAAGGGAGGGAGGAAGAGGCGGGTATTGAGA
ACAAAGGAAGGAAAACGAAGGGGAGGAATGTAGAAATACACGCGAGGAAG
AGTACACACACGAGAAAAGAAGGAAAAACAAAAGGGAAAAAACGACGATG
AAAGGCA
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protein sequence of NO01G03930.1

>NO01G03930.1-protein ID=NO01G03930.1-protein|Name=NO01G03930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MERFFGSFVPTTREYVTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHV
DELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQYQGGS
SRRFFFWMQSASDEKDEELVKRLNECMTNPPPSEAEEGGAGGTGAAGGTG
DAPASQQNVEDLLSSMLGGGTTGAQTRVPGPSAAVTAPASGSSSAGATGR
GGQLTAADLQRAMMNLTGMQQQQQQQRTVPLTEIVNADEVLRSGVLSDPA
VQEQLIPLLAEGQQTPEQLEAIMHSPQFRSTLGSLTGALQTDNFNSIMSN
FGLDASRGMEALSAGNNVDAFLQALLALQQQEGEAGDRGEGGEKMEEEKD
EGKE*
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Synonyms
Publications