NO01G03930.1, NO01G03930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03930.1
Unique NameNO01G03930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr1:1049084..1050540 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1049084..1050540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03930.1 vs.
Match: EWM29328.1 (adhesion regulating molecule 1 [Nannochloropsis gaditana])

HSP 1 Score: 516.9 bits (1330), Expect = 4.900e-143
Identity = 280/359 (77.99%), Postives = 303/359 (84.40%), Query Frame = 0 
Query:    1 MERFFGSFVPTTREYVTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHVDELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQYQGGSSRRFFFWMQSASDEKDEELVKRLNECMTNPPPSEAEEGG-----AGGTGAAGGTGDAPASQQNVEDLLSSMLGGGTTGAQTRVPGPSAAVTAPASGSSSAGATGRGGQLTAADLQRAMMNLTGMQQQQQQQRTVPLTEIVNADEVLRSGVLSDPAVQEQLIPLLAEGQQTPEQLEAIMHSPQFRSTLGSLTGALQTDNFNSIMSNFGLDASRGMEALSAGNNVDAFLQALLALQQQEGEAGDRGEGGEKMEEEKDEGKE 355
            MERFFGSFVPTTREYV+FKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHVDELTHLQWKDRTTNTVVEDVI MPHDA+F RVNTGR KDRVY+LQYQGGSSRRFFFWMQSASDEKDEE+V RLN CM  PP  +   GG      G +GA GG  DA  SQQNVEDLLSSMLG G T  Q R P PS A TAPASGSSSAGA GRGGQLTAADLQRAMMNLTG Q Q  Q  +VPLTE+++AD+VLRSG+L+DPAVQEQLIPLL EGQQTPEQLEAI+ SPQ RS+L SLTGALQTDNFN+I+SNFGLD SRGMEAL+AGNNV+AFLQALLAL +QEGE  D   GGE  EE ++  +E
Sbjct:    1 MERFFGSFVPTTREYVSFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHVDELTHLQWKDRTTNTVVEDVIVMPHDAHFTRVNTGRTKDRVYMLQYQGGSSRRFFFWMQSASDEKDEEVVTRLNTCMAEPPAEDTSMGGDDSTEGGASGAGGGASDASPSQQNVEDLLSSMLGPGATSGQFRAPAPSIAPTAPASGSSSAGAVGRGGQLTAADLQRAMMNLTGRQPQPPQ--SVPLTEVLSADQVLRSGILADPAVQEQLIPLLPEGQQTPEQLEAIVRSPQLRSSLASLTGALQTDNFNAIVSNFGLDPSRGMEALAAGNNVEAFLQALLAL-RQEGEGSDSRGGGEGKEEGREYKEE 356
The following BLAST results are available for this feature:
BLAST of NO01G03930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29328.14.900e-14377.99adhesion regulating molecule 1 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03930NO01G03930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03930.1NO01G03930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03930.1.cds1NO01G03930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03930.1.cds2NO01G03930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03930.1 ID=NO01G03930.1|Name=NO01G03930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
CCCGAAGTCATTCATGTTCTCCGCAAAACTCTTCCCCCTACTAACATAGA
CTCTATCAGCTGCAGCAGCGGTAGCAGTAGCAGCGGCCACAGGATGGAGC
GATTTTTTGGCAGCTTTGTCCCCACGACGCGCGAGTACGTGACGTTCAAG
GCTGGGAGGTGCGATGTGGAAGATAAGGGCAATAACAAGTTTCTGATCAC
GCCGGACCGGCGCAAGGGCCAACTGACCCTCCTCAAGCACGTTGACGAGC
TCACGCACCTGCAGTGGAAAGACCGGACAACCAACACAGTAGTTGAGGAT
GTGATTGCCATGCCCCACGACGCCTACTTTGCCCGGGTCAACACGGGCCG
GGAAAAAGATCGCGTGTACATCTTGCAATATCAGGGGGGTTCCTCCCGTC
GCTTCTTCTTCTGGATGCAAAGCGCATCAGATGAGAAGGACGAAGAGCTT
GTGAAGCGCCTGAACGAATGCATGACCAACCCTCCCCCCAGTGAGGCGGA
GGAAGGTGGCGCCGGTGGGACAGGTGCCGCGGGAGGTACGGGAGATGCGC
CGGCTTCGCAGCAAAATGTGGAAGACCTGCTTTCGTCCATGCTGGGGGGC
GGGACCACGGGGGCCCAGACCCGCGTGCCCGGCCCGTCGGCTGCGGTAAC
GGCTCCCGCATCTGGTAGCAGCAGCGCCGGCGCCACAGGACGTGGAGGGC
AACTGACTGCGGCGGATTTGCAGCGCGCCATGATGAATCTGACGGGCATG
CAGCAGCAGCAGCAGCAGCAGCGGACGGTGCCCTTGACCGAGATTGTCAA
CGCGGATGAAGTGCTCCGTTCGGGCGTGCTTTCCGACCCGGCGGTGCAAG
AACAGCTGATTCCCTTGTTGGCGGAGGGGCAGCAGACACCGGAGCAGCTG
GAGGCGATCATGCATAGCCCTCAATTCAGGTCGACTCTGGGAAGCTTGAC
GGGGGCGTTGCAAACGGATAATTTCAATTCTATTATGAGTAATTTTGGCT
TGGACGCAAGCAGAGGGATGGAGGCCCTGTCGGCGGGGAATAACGTGGAC
GCGTTTTTGCAGGCGTTGTTGGCGTTGCAGCAGCAGGAGGGAGAGGCCGG
GGACCGGGGTGAGGGGGGTGAGAAGATGGAGGAGGAGAAGGATGAGGGGA
AAGAGTAAAAGGAGAAGGGCTCTGGCCTGTGCCCTCGGAATATGGGAAGG
GAGGAAGGGAGGGAGGAAGAGGCGGGTATTGAGAACAAAGGAAGGAAAAC
GAAGGGGAGGAATGTAGAAATACACGCGAGGAAGAGTACACACACGAGAA
AAGAAGGAAAAACAAAAGGGAAAAAACGACGATGAAAGGCA
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protein sequence of NO01G03930.1

>NO01G03930.1-protein ID=NO01G03930.1-protein|Name=NO01G03930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MERFFGSFVPTTREYVTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHV
DELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQYQGGS
SRRFFFWMQSASDEKDEELVKRLNECMTNPPPSEAEEGGAGGTGAAGGTG
DAPASQQNVEDLLSSMLGGGTTGAQTRVPGPSAAVTAPASGSSSAGATGR
GGQLTAADLQRAMMNLTGMQQQQQQQRTVPLTEIVNADEVLRSGVLSDPA
VQEQLIPLLAEGQQTPEQLEAIMHSPQFRSTLGSLTGALQTDNFNSIMSN
FGLDASRGMEALSAGNNVDAFLQALLALQQQEGEAGDRGEGGEKMEEEKD
EGKE*
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mRNA from alignment at chr1:1049084..1050540+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03930.1 ID=NO01G03930.1|Name=NO01G03930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at chr1:1049084..1050540+ (Nannochloropsis oceanica)
CCCGAAGTCATTCATGTTCTCCGCAAAACTCTTCCCCCTACTAACATAGA
CTCTATCAGCTGCAGCAGCGGTAGCAGTAGCAGCGGCCACAGGATGGAGC
GATTTTTTGGCAGCTTTGTCCCCACGACGCGCGAGGTAAGTTTTGCTCGC
GTTCCTCTCCCTTCCTCCTCGCCTCTCTCTCTCTCTCTCTGTCTCTCTAT
CTCTCACCCCCATCCTCCTCATACCTCACAACCTAATCCTGCCACCTACA
GTACGTGACGTTCAAGGCTGGGAGGTGCGATGTGGAAGATAAGGGCAATA
ACAAGTTTCTGATCACGCCGGACCGGCGCAAGGGCCAACTGACCCTCCTC
AAGCACGTTGACGAGCTCACGCACCTGCAGTGGAAAGACCGGACAACCAA
CACAGTAGTTGAGGATGTGATTGCCATGCCCCACGACGCCTACTTTGCCC
GGGTCAACACGGGCCGGGAAAAAGATCGCGTGTACATCTTGCAATATCAG
GGGGGTTCCTCCCGTCGCTTCTTCTTCTGGATGCAAAGCGCATCAGATGA
GAAGGACGAAGAGCTTGTGAAGCGCCTGAACGAATGCATGACCAACCCTC
CCCCCAGTGAGGCGGAGGAAGGTGGCGCCGGTGGGACAGGTGCCGCGGGA
GGTACGGGAGATGCGCCGGCTTCGCAGCAAAATGTGGAAGACCTGCTTTC
GTCCATGCTGGGGGGCGGGACCACGGGGGCCCAGACCCGCGTGCCCGGCC
CGTCGGCTGCGGTAACGGCTCCCGCATCTGGTAGCAGCAGCGCCGGCGCC
ACAGGACGTGGAGGGCAACTGACTGCGGCGGATTTGCAGCGCGCCATGAT
GAATCTGACGGGCATGCAGCAGCAGCAGCAGCAGCAGCGGACGGTGCCCT
TGACCGAGATTGTCAACGCGGATGAAGTGCTCCGTTCGGGCGTGCTTTCC
GACCCGGCGGTGCAAGAACAGCTGATTCCCTTGTTGGCGGAGGGGCAGCA
GACACCGGAGCAGCTGGAGGCGATCATGCATAGCCCTCAATTCAGGTCGA
CTCTGGGAAGCTTGACGGGGGCGTTGCAAACGGATAATTTCAATTCTATT
ATGAGTAATTTTGGCTTGGACGCAAGCAGAGGGATGGAGGCCCTGTCGGC
GGGGAATAACGTGGACGCGTTTTTGCAGGCGTTGTTGGCGTTGCAGCAGC
AGGAGGGAGAGGCCGGGGACCGGGGTGAGGGGGGTGAGAAGATGGAGGAG
GAGAAGGATGAGGGGAAAGAGTAAAAGGAGAAGGGCTCTGGCCTGTGCCC
TCGGAATATGGGAAGGGAGGAAGGGAGGGAGGAAGAGGCGGGTATTGAGA
ACAAAGGAAGGAAAACGAAGGGGAGGAATGTAGAAATACACGCGAGGAAG
AGTACACACACGAGAAAAGAAGGAAAAACAAAAGGGAAAAAACGACGATG
AAAGGCA
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Coding sequence (CDS) from alignment at chr1:1049084..1050540+

>NO01G03930.1 ID=NO01G03930.1|Name=NO01G03930.1|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at chr1:1049084..1050540+ (Nannochloropsis oceanica)
ATGGAGCGATTTTTTGGCAGCTTTGTCCCCACGACGCGCGAGTACGTGAC
GTTCAAGGCTGGGAGGTGCGATGTGGAAGATAAGGGCAATAACAAGTTTC
TGATCACGCCGGACCGGCGCAAGGGCCAACTGACCCTCCTCAAGCACGTT
GACGAGCTCACGCACCTGCAGTGGAAAGACCGGACAACCAACACAGTAGT
TGAGGATGTGATTGCCATGCCCCACGACGCCTACTTTGCCCGGGTCAACA
CGGGCCGGGAAAAAGATCGCGTGTACATCTTGCAATATCAGGGGGGTTCC
TCCCGTCGCTTCTTCTTCTGGATGCAAAGCGCATCAGATGAGAAGGACGA
AGAGCTTGTGAAGCGCCTGAACGAATGCATGACCAACCCTCCCCCCAGTG
AGGCGGAGGAAGGTGGCGCCGGTGGGACAGGTGCCGCGGGAGGTACGGGA
GATGCGCCGGCTTCGCAGCAAAATGTGGAAGACCTGCTTTCGTCCATGCT
GGGGGGCGGGACCACGGGGGCCCAGACCCGCGTGCCCGGCCCGTCGGCTG
CGGTAACGGCTCCCGCATCTGGTAGCAGCAGCGCCGGCGCCACAGGACGT
GGAGGGCAACTGACTGCGGCGGATTTGCAGCGCGCCATGATGAATCTGAC
GGGCATGCAGCAGCAGCAGCAGCAGCAGCGGACGGTGCCCTTGACCGAGA
TTGTCAACGCGGATGAAGTGCTCCGTTCGGGCGTGCTTTCCGACCCGGCG
GTGCAAGAACAGCTGATTCCCTTGTTGGCGGAGGGGCAGCAGACACCGGA
GCAGCTGGAGGCGATCATGCATAGCCCTCAATTCAGGTCGACTCTGGGAA
GCTTGACGGGGGCGTTGCAAACGGATAATTTCAATTCTATTATGAGTAAT
TTTGGCTTGGACGCAAGCAGAGGGATGGAGGCCCTGTCGGCGGGGAATAA
CGTGGACGCGTTTTTGCAGGCGTTGTTGGCGTTGCAGCAGCAGGAGGGAG
AGGCCGGGGACCGGGGTGAGGGGGGTGAGAAGATGGAGGAGGAGAAGGAT
GAGGGGAAAGAGTAA
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Synonyms
Publications