NO01G03920, NO01G03920 (gene) Nannochloropsis oceanica

Overview
NameNO01G03920
Unique NameNO01G03920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length699
Alignment locationchr1:1047835..1048533 -

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Properties
Property NameValue
DescriptionPeptidylprolyl isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1047835..1048533 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO01G03920 vs. NCBI_GenBank
Match: XP_005538674.1 (hypothetical protein CYME_CMR473C [Cyanidioschyzon merolae strain 10D] >BAM82638.1 hypothetical protein CYME_CMR473C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 112.1 bits (279), Expect = 2.400e-21
Identity = 63/171 (36.84%), Postives = 94/171 (54.97%), Query Frame = 0
Query:   30 PVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGY----------IRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDDLTFDSQYLQDGM 191
            P+   T +GLRYYD  +G+G SP WG + ++++  Y            A+P  +L  +  T  R   YL+KHG+GR I G++E +HTMR  G RR++VP  L Y    LGP+P   + R  L ++LE+ E       +V+D+EL  +  D  D GYY D+      ++DGM
Sbjct:  121 PLGKVTATGLRYYDFVEGDGTSPDWGDLCVVEFVLYSVPRPRAAPGSSAAPAIRLRPWYSTGGR--GYLIKHGDGRTIAGIEEAIHTMREHGRRRVIVPPRLAYVHADLGPVPDRTWTRLRLAKKLEEGEL------LVFDLELRKVMKDPKDRGYYKDI-----IVRDGM 278          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: CEL93820.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 111.7 bits (278), Expect = 3.100e-21
Identity = 73/197 (37.06%), Postives = 102/197 (51.78%), Query Frame = 0
Query:    3 ISFSSPSPFQPPSAF-AATNSVQDSDLPPVA----FKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYAR------KTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLE---LGYTKT---GLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDDLTFD 183
            +SF  PS   P   F A     + S  PP A    F TKSG+ + D  +G G +P+WGQ      EGY++    S  V +  + A       +   L+ HGNGR IRGL+E +HTMR GG RR++VP     L Y  T      P P N  +R    R L + +   P G+ ++DV+LV ++D+EAD GY++D   D
Sbjct:  125 LSFPRPSEALPEGFFDAVFKPFEPSKQPPPAPKNGFITKSGVIFSDFEQGTGPTPRWGQFVSAFVEGYMKTDRESAPVQYFSSQAELKGKYGRGEMLMHHGNGRTIRGLEEAIHTMRAGGRRRVIVPANNPILSYFATDERAFMPAPFNFMQRYRYERLLSQMQ---PDGQFIFDVKLVKIFDNEADQGYFEDEILD 318          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: XP_009032266.1 (hypothetical protein AURANDRAFT_16767, partial [Aureococcus anophagefferens] >EGB12602.1 hypothetical protein AURANDRAFT_16767, partial [Aureococcus anophagefferens])

HSP 1 Score: 103.6 bits (257), Expect = 8.400e-19
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   36 KSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLG 130
            K+GL+Y D   G GA+P+WGQV  I+Y  Y R     KL   D        YLV+HGNGR IRGLDEG+HTMR+GG RR+ VPL +GYT  GLG
Sbjct:   14 KNGLKYVDGVAGAGAAPEWGQVLKIKYTAYTRDGA-GKLTKVDAV----PTYLVRHGNGRTIRGLDEGIHTMRVGGTRRVEVPLTMGYTAPGLG 102          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: XP_005756873.1 (hypothetical protein EMIHUDRAFT_60569, partial [Emiliania huxleyi CCMP1516] >EOD04444.1 hypothetical protein EMIHUDRAFT_60569, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 97.8 bits (242), Expect = 4.600e-17
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 0
Query:   35 TKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGY 124
            T SGLRY+D  +G GA P++GQ+    Y GY        L  FD +Y R+TPY  KHGNG  ++GL+E LHTMR GG RR+++P +L Y
Sbjct:    1 TASGLRYFDFAEGSGAPPRFGQLIRFHYVGYTATD--DSLEPFDSSYERRTPYFTKHGNGFTVQGLEEALHTMRPGGRRRVILPPKLSY 87          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: XP_002179372.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49195.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 97.8 bits (242), Expect = 4.600e-17
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 0
Query:   38 GLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLP 133
            GL+Y D+  G+G +P++GQ+  I Y  Y +  P +        + R   Y+VKHGNGR+I GLDEGLH MR+GG RRI+VP +LGY  +GLGP+P
Sbjct:    1 GLKYLDLVVGDGPTPRYGQLLSIAYTAYGKL-PAAARNNQPQQFDRDDGYVVKHGNGRIIPGLDEGLHGMRVGGTRRILVPPKLGYVDSGLGPMP 94          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: WP_096624258.1 (FKBP-type peptidyl-prolyl cis-trans isomerase [Calothrix sp. NIES-3974] >BAZ07291.1 FKBP-type peptidylprolyl isomerase [Calothrix sp. NIES-3974])

HSP 1 Score: 95.9 bits (237), Expect = 1.800e-16
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 0
Query:   35 TKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNA 136
            T SGL+Y D++ G GA+PK GQ  ++ Y G +          FD +  R  P+    G G+VI+G DEG+ TM++GG R++V+P +LGY + G+GP+PPNA
Sbjct:   69 TPSGLKYTDLKVGSGATPKTGQTVVVHYTGTLPDG-----TKFDSSRDRNQPFEFAIGTGQVIKGWDEGVGTMQVGGRRQLVIPPQLGYGEAGVGPIPPNA 164          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: OEU22249.1 (hypothetical protein FRACYDRAFT_155129, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 94.7 bits (234), Expect = 3.900e-16
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = 0
Query:   38 GLRYYDVRKGEGAS---PKWGQVAIIQYEGYIRASPFSKLVLFDDT---YARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLP 133
            GL+Y ++ +G G S   P++GQV +I Y GY++          DDT   +A ++ +++KHG+GR+I GLDEGLHTM+ GG RR+++P +LG+   GLGP+P
Sbjct:    1 GLKYIELEEGIGDSSKTPRYGQVCVISYTGYLQLPK-------DDTKKKFASQSGFILKHGSGRLIAGLDEGLHTMKQGGQRRLLIPPKLGFVLNGLGPIP 94          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: XP_005762243.1 (hypothetical protein EMIHUDRAFT_216423 [Emiliania huxleyi CCMP1516] >EOD09814.1 hypothetical protein EMIHUDRAFT_216423 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 94.4 bits (233), Expect = 5.100e-16
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0
Query:    3 ISFSSPSPFQPPSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRR 115
            ++ + PS  +P  A A          P V +KT SGLRY+D  +G GA P++GQ+    Y GY        L  FD +Y R+TPY  KHGNG  ++GL+E LHTMR GG RR
Sbjct:   28 LAAAGPSALRPAGASA----------PQVGYKTASGLRYFDFAEGSGAPPRFGQLIRFHYVGYTATD--DSLEPFDSSYERRTPYFTKHGNGFTVQGLEEALHTMRPGGRRR 127          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: WP_011432059.1 (FKBP-type peptidyl-prolyl cis-trans isomerase [Synechococcus sp. JA-2-3B'a(2-13)] >ABD01391.1 peptidyl-prolyl cis-trans isomerase, FKBP-type [Synechococcus sp. JA-2-3B'a(2-13)])

HSP 1 Score: 93.6 bits (231), Expect = 8.700e-16
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 0
Query:   35 TKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGL-GPLPPNA 136
            T+SGL+YYD+ +G G SP+ GQ  ++ Y G ++        +FD +Y R  P++  +G G+VIRG +EGL TMR+GG R + +P EL Y   G  G +PPNA
Sbjct:   46 TESGLQYYDIAQGSGPSPQPGQTVVVNYVGKLQDG-----TIFDSSYKRNQPFVFTYGVGQVIRGWEEGLATMRVGGKRYLRIPPELAYGSRGAGGVIPPNA 142          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: WP_015227426.1 (FKBP-type peptidyl-prolyl cis-trans isomerase [Halothece sp. PCC 7418] >AFZ45554.1 Peptidylprolyl isomerase [Halothece sp. PCC 7418])

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-15
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 0
Query:   35 TKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGL-GPLPPNA 136
            T+SGLRY D+ +G+GA+PK GQ  ++ Y G +          FD +  R  P+  K G G+VI+G +EG+ TM++GG R++++P ELGY + G  G +PPNA
Sbjct:   62 TESGLRYVDIEEGDGATPKEGQTVVVHYTGSLADG-----TKFDSSRDRDRPFSFKLGEGQVIKGWEEGISTMQVGGRRQLIIPPELGYGQRGAGGVIPPNA 158          
The following BLAST results are available for this feature:
BLAST of NO01G03920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005538674.12.400e-2136.84hypothetical protein CYME_CMR473C [Cyanidioschyzon... [more]
CEL93820.13.100e-2137.06unnamed protein product [Vitrella brassicaformis C... [more]
XP_009032266.18.400e-1955.32hypothetical protein AURANDRAFT_16767, partial [Au... [more]
XP_005756873.14.600e-1749.44hypothetical protein EMIHUDRAFT_60569, partial [Em... [more]
XP_002179372.14.600e-1749.47predicted protein, partial [Phaeodactylum tricornu... [more]
WP_096624258.11.800e-1643.56FKBP-type peptidyl-prolyl cis-trans isomerase [Cal... [more]
OEU22249.13.900e-1644.55hypothetical protein FRACYDRAFT_155129, partial [F... [more]
XP_005762243.15.100e-1643.75hypothetical protein EMIHUDRAFT_216423 [Emiliania ... [more]
WP_011432059.18.700e-1644.12FKBP-type peptidyl-prolyl cis-trans isomerase [Syn... [more]
WP_015227426.11.100e-1543.14FKBP-type peptidyl-prolyl cis-trans isomerase [Hal... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007903NSK007903Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03920.1NO01G03920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577230gene_403Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g6gene1303Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03920.1NO01G03920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03920 ID=NO01G03920|Name=NO01G03920|organism=Nannochloropsis oceanica|type=gene|length=699bp
ATGGGCATCTCCTTCTCCTCTCCCTCCCCTTTCCAGCCACCCTCTGCCTT
TGCTGCCACCAACAGCGTGCAAGACTCGGACTTACCGCCTGTTGCTTTCA
AAACCAAAAGTGGACTCCGGTACTATGATGTGCGAAAAGGTGAAGGTGCC
AGTCCGAAATGGGGTCAAGTCGCCATCATTCAATATGAGGGCTATATACG
TGCCTCGCCCTTCTCAAAACTCGTCTTGTTCGACGACACTTACGCTCGCA
AGACCCCTTATTTGGTGAAACATGGGAATGGTCGTGTCATCCGTGGGTTG
GACGAAGGGTTGCATACCATGAGACTGGGAGGACTGCGACGCATTGTCGT
ACCGCTTGAACTAGGGTACACCAAAACAGGCCTCGGTCCCCTCCCTCCCA
ATGCCTTTCGCCGCAAAATTTTGGTGCGTGAGCTCGAAAAGGCCGAGACC
AACGATCCGATGGGCGAAATAGTGTATGATGTGGAACTCGTATCATTGTA
CGATGATGAGGCGGATTTGGGGTATTATGACGACTTGACTTTTGACTCGC
AATATCTCCAAGATGGGATGGCGAAAAGCTTGCAGGAATTGAGGGATAAG
GGGGTAAAGGTACCATCAACCAAGACCTTTATGACCAAACCGGAGATTTT
GGGAAGTAGAAGGCAGGAGATAGAATTAAATTTGCCGGAGGAGGATTGA
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protein sequence of NO01G03920.1

>NO01G03920.1-protein ID=NO01G03920.1-protein|Name=NO01G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MGISFSSPSPFQPPSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGA
SPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGL
DEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAET
NDPMGEIVYDVELVSLYDDEADLGYYDDLTFDSQYLQDGMAKSLQELRDK
GVKVPSTKTFMTKPEILGSRRQEIELNLPEED*
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Synonyms
Publications