NO01G03920.1, NO01G03920.1 (mRNA) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO01G03920.1 vs.
Match: EWM29325.1 (fkbp-type peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana]) HSP 1 Score: 398.7 bits (1023), Expect = 1.300e-107 Identity = 202/233 (86.70%), Postives = 211/233 (90.56%), Query Frame = 0 Query: 1 MGISFSSPSPF--QPPSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDDLTFDSQYLQDGMAKSLQELRDKGVKVPSTKTFMTKPEILGSRRQEIELN-LPE 231 MG FS F +P A AA N VQD DLP VAF+TKSGLRYYDVRKGEG SPKWGQVAIIQYEGY+RASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEG+H+M+LGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVREL KAE NDP GEI+YDVELVSLYDDEADLGYYDDLTFD YLQ+GMAKSLQELRDKGVKVPSTK+FMTKPEILGSRRQEIELN LPE Sbjct: 128 MGAFFSPDPDFPRRPRHAHAAANRVQDMDLPAVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDPGYLQEGMAKSLQELRDKGVKVPSTKSFMTKPEILGSRRQEIELNGLPE 360 The following BLAST results are available for this feature:
BLAST of NO01G03920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1) Total hits: 1
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03920.1 ID=NO01G03920.1|Name=NO01G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=699bpback to top protein sequence of NO01G03920.1 >NO01G03920.1-protein ID=NO01G03920.1-protein|Name=NO01G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bpback to top mRNA from alignment at chr1:1047835..1048533- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>NO01G03920.1 ID=NO01G03920.1|Name=NO01G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=699bp|location=Sequence derived from alignment at chr1:1047835..1048533- (Nannochloropsis oceanica)back to top Coding sequence (CDS) from alignment at chr1:1047835..1048533- >NO01G03920.1 ID=NO01G03920.1|Name=NO01G03920.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr1:1047835..1048533- (Nannochloropsis oceanica)back to top Synonyms
Publications
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