NO01G03920.1, NO01G03920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03920.1
Unique NameNO01G03920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length699
Alignment locationchr1:1047835..1048533 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1047835..1048533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03920.1 vs.
Match: EWM29325.1 (fkbp-type peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 398.7 bits (1023), Expect = 1.300e-107
Identity = 202/233 (86.70%), Postives = 211/233 (90.56%), Query Frame = 0
Query:    1 MGISFSSPSPF--QPPSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDDLTFDSQYLQDGMAKSLQELRDKGVKVPSTKTFMTKPEILGSRRQEIELN-LPE 231
            MG  FS    F  +P  A AA N VQD DLP VAF+TKSGLRYYDVRKGEG SPKWGQVAIIQYEGY+RASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEG+H+M+LGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVREL KAE NDP GEI+YDVELVSLYDDEADLGYYDDLTFD  YLQ+GMAKSLQELRDKGVKVPSTK+FMTKPEILGSRRQEIELN LPE
Sbjct:  128 MGAFFSPDPDFPRRPRHAHAAANRVQDMDLPAVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDPGYLQEGMAKSLQELRDKGVKVPSTKSFMTKPEILGSRRQEIELNGLPE 360          
The following BLAST results are available for this feature:
BLAST of NO01G03920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29325.11.300e-10786.70fkbp-type peptidyl-prolyl cis-trans isomerase [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03920NO01G03920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03920.1NO01G03920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03920.1.cds1NO01G03920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03920.1 ID=NO01G03920.1|Name=NO01G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=699bp
ATGGGCATCTCCTTCTCCTCTCCCTCCCCTTTCCAGCCACCCTCTGCCTT
TGCTGCCACCAACAGCGTGCAAGACTCGGACTTACCGCCTGTTGCTTTCA
AAACCAAAAGTGGACTCCGGTACTATGATGTGCGAAAAGGTGAAGGTGCC
AGTCCGAAATGGGGTCAAGTCGCCATCATTCAATATGAGGGCTATATACG
TGCCTCGCCCTTCTCAAAACTCGTCTTGTTCGACGACACTTACGCTCGCA
AGACCCCTTATTTGGTGAAACATGGGAATGGTCGTGTCATCCGTGGGTTG
GACGAAGGGTTGCATACCATGAGACTGGGAGGACTGCGACGCATTGTCGT
ACCGCTTGAACTAGGGTACACCAAAACAGGCCTCGGTCCCCTCCCTCCCA
ATGCCTTTCGCCGCAAAATTTTGGTGCGTGAGCTCGAAAAGGCCGAGACC
AACGATCCGATGGGCGAAATAGTGTATGATGTGGAACTCGTATCATTGTA
CGATGATGAGGCGGATTTGGGGTATTATGACGACTTGACTTTTGACTCGC
AATATCTCCAAGATGGGATGGCGAAAAGCTTGCAGGAATTGAGGGATAAG
GGGGTAAAGGTACCATCAACCAAGACCTTTATGACCAAACCGGAGATTTT
GGGAAGTAGAAGGCAGGAGATAGAATTAAATTTGCCGGAGGAGGATTGA
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protein sequence of NO01G03920.1

>NO01G03920.1-protein ID=NO01G03920.1-protein|Name=NO01G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MGISFSSPSPFQPPSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGA
SPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGL
DEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAET
NDPMGEIVYDVELVSLYDDEADLGYYDDLTFDSQYLQDGMAKSLQELRDK
GVKVPSTKTFMTKPEILGSRRQEIELNLPEED*
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mRNA from alignment at chr1:1047835..1048533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03920.1 ID=NO01G03920.1|Name=NO01G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=699bp|location=Sequence derived from alignment at chr1:1047835..1048533- (Nannochloropsis oceanica)
ATGGGCATCTCCTTCTCCTCTCCCTCCCCTTTCCAGCCACCCTCTGCCTT TGCTGCCACCAACAGCGTGCAAGACTCGGACTTACCGCCTGTTGCTTTCA AAACCAAAAGTGGACTCCGGTACTATGATGTGCGAAAAGGTGAAGGTGCC AGTCCGAAATGGGGTCAAGTCGCCATCATTCAATATGAGGGCTATATACG TGCCTCGCCCTTCTCAAAACTCGTCTTGTTCGACGACACTTACGCTCGCA AGACCCCTTATTTGGTGAAACATGGGAATGGTCGTGTCATCCGTGGGTTG GACGAAGGGTTGCATACCATGAGACTGGGAGGACTGCGACGCATTGTCGT ACCGCTTGAACTAGGGTACACCAAAACAGGCCTCGGTCCCCTCCCTCCCA ATGCCTTTCGCCGCAAAATTTTGGTGCGTGAGCTCGAAAAGGCCGAGACC AACGATCCGATGGGCGAAATAGTGTATGATGTGGAACTCGTATCATTGTA CGATGATGAGGCGGATTTGGGGTATTATGACGACTTGACTTTTGACTCGC AATATCTCCAAGATGGGATGGCGAAAAGCTTGCAGGAATTGAGGGATAAG GGGGTAAAGGTACCATCAACCAAGACCTTTATGACCAAACCGGAGATTTT GGGAAGTAGAAGGCAGGAGATAGAATTAAATTTGCCGGAGGAGGATTGA
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Coding sequence (CDS) from alignment at chr1:1047835..1048533-

>NO01G03920.1 ID=NO01G03920.1|Name=NO01G03920.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr1:1047835..1048533- (Nannochloropsis oceanica)
ATGGGCATCTCCTTCTCCTCTCCCTCCCCTTTCCAGCCACCCTCTGCCTT
TGCTGCCACCAACAGCGTGCAAGACTCGGACTTACCGCCTGTTGCTTTCA
AAACCAAAAGTGGACTCCGGTACTATGATGTGCGAAAAGGTGAAGGTGCC
AGTCCGAAATGGGGTCAAGTCGCCATCATTCAATATGAGGGCTATATACG
TGCCTCGCCCTTCTCAAAACTCGTCTTGTTCGACGACACTTACGCTCGCA
AGACCCCTTATTTGGTGAAACATGGGAATGGTCGTGTCATCCGTGGGTTG
GACGAAGGGTTGCATACCATGAGACTGGGAGGACTGCGACGCATTGTCGT
ACCGCTTGAACTAGGGTACACCAAAACAGGCCTCGGTCCCCTCCCTCCCA
ATGCCTTTCGCCGCAAAATTTTGGTGCGTGAGCTCGAAAAGGCCGAGACC
AACGATCCGATGGGCGAAATAGTGTATGATGTGGAACTCGTATCATTGTA
CGATGATGAGGCGGATTTGGGGTATTATGACGACTTGACTTTTGACTCGC
AATATCTCCAAGATGGGATGGCGAAAAGCTTGCAGGAATTGAGGGATAAG
GGGGTAAAGGTACCATCAACCAAGACCTTTATGACCAAACCGGAGATTTT
GGGAAGTAGAAGGCAGGAGATAGAATTAAATTTGCCGGAGGAGGATTGA
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Synonyms
Publications