NO01G03920, NO01G03920 (gene) Nannochloropsis oceanica

Overview
NameNO01G03920
Unique NameNO01G03920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length699
Alignment locationchr1:1047835..1048533 -

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Properties
Property NameValue
DescriptionPeptidylprolyl isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1047835..1048533 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO01G03920 vs. NCBI_GenBank
Match: EWM29325.1 (fkbp-type peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 398.7 bits (1023), Expect = 1.300e-107
Identity = 202/233 (86.70%), Postives = 211/233 (90.56%), Query Frame = 0
Query:    1 MGISFSSPSPF--QPPSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDDLTFDSQYLQDGMAKSLQELRDKGVKVPSTKTFMTKPEILGSRRQEIELN-LPE 231
            MG  FS    F  +P  A AA N VQD DLP VAF+TKSGLRYYDVRKGEG SPKWGQVAIIQYEGY+RASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEG+H+M+LGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVREL KAE NDP GEI+YDVELVSLYDDEADLGYYDDLTFD  YLQ+GMAKSLQELRDKGVKVPSTK+FMTKPEILGSRRQEIELN LPE
Sbjct:  128 MGAFFSPDPDFPRRPRHAHAAANRVQDMDLPAVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDPGYLQEGMAKSLQELRDKGVKVPSTKSFMTKPEILGSRRQEIELNGLPE 360          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: CBJ28081.1 (FKBP-type peptidyl-prolyl cis-trans isomerase [Ectocarpus siliculosus])

HSP 1 Score: 157.9 bits (398), Expect = 3.800e-35
Identity = 75/170 (44.12%), Postives = 109/170 (64.12%), Query Frame = 0
Query:   19 ATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDDLTFDSQYLQD 189
            A    ++ ++P V   TK+G++Y+D R GEG SP+WGQ  II++  Y R++P  KL+    +   K  YL KHGNG  I+G++EG+H+MR+GG RR+++P  +GY+  GLGP P +  +R ILV  L   E     GE+V D+EL+  +DDEAD GYY+D     + LQD
Sbjct:  106 AAGMQEEEEVPTVGKITKAGIKYFDFRVGEGPSPRWGQDCIIRFTMYGRSTPDEKLIKIQSSDNNKEKYLFKHGNGFQIKGMEEGMHSMRVGGKRRVIMPQSMGYSVQGLGPYPADPRKRDILVEVLTSFE-KTTTGELVMDIELLDAFDDEADQGYYEDTAVTPEQLQD 274          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: EJK63695.1 (hypothetical protein THAOC_15633 [Thalassiosira oceanica])

HSP 1 Score: 146.7 bits (369), Expect = 8.700e-32
Identity = 77/171 (45.03%), Postives = 104/171 (60.82%), Query Frame = 0
Query:    8 PSPFQPPSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDD 179
            P   +PP++ A+ + V+        FKT SGL+Y ++R+G G SPK+G    I Y  Y++    S+     D +     YL+KHGNGR I GLDEGLHTM++GG RRI++P +LGY   GLGPLP   + R  L R LEK       G +V DVE+ S+ +DEAD GYY+D
Sbjct:   88 PQSTKPPTSTASEDGVR-------VFKTNSGLQYIELREGSGESPKYGNFVTIAYRAYVKLPDTSEKKFDLDEFDSDKAYLIKHGNGRTIPGLDEGLHTMKVGGKRRIIIPPKLGYVTNGLGPLPVGPYGRFKLYRLLEKM-VEYRGGNVVVDVEMKSIMEDEADQGYYED 250          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: XP_002288036.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95479.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 141.7 bits (356), Expect = 2.800e-30
Identity = 71/146 (48.63%), Postives = 95/146 (65.07%), Query Frame = 0
Query:   33 FKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDD 179
            FKTKSGL+Y D+ +G GASPK+G    I Y+ +I+           D +     +LVKHGNGR + GLDEGLHTM++GG RRI+VP +LGY  +GLGP+P   + R  L R L++       G +V+DVE+ S+ +DEAD GYYDD
Sbjct:  131 FKTKSGLQYIDLVEGTGASPKYGNFITISYKAFIKLPDIQGKKSEFDEFDSDKGFLVKHGNGRNVPGLDEGLHTMKVGGKRRIIVPPKLGYVSSGLGPIPVGPYGRWKLNRLLDRM-VEAKGGNVVFDVEMKSILEDEADQGYYDD 275          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: OSX75750.1 (hypothetical protein BU14_0223s0022 [Porphyra umbilicalis])

HSP 1 Score: 140.2 bits (352), Expect = 8.100e-30
Identity = 78/177 (44.07%), Postives = 102/177 (57.63%), Query Frame = 0
Query:   13 PPSAFAA-------TNSVQDSDLPP-VAFKTKSGLRYYDVRKGEG-ASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDDLT 181
            PP A AA       TN+ +D   PP   F T SGLRY+D   G G   P WG +  + Y  Y  +    +L + D TYARK   LV HGNG+ I G++E LH MR GG RR+V+P  LGYT +GLGP+PP   +R+ L + L     N+  G +V+D+ELV++  D  D G Y DLT
Sbjct:   97 PPRASAAPAVGPTVTNAAKDGSTPPETGFVTNSGLRYFDFAVGSGDRRPVWGDLLTVSYVLYTVSPEGDRLDIADSTYARKQHMLVHHGNGQTILGVEEALHGMRAGGRRRVVIPPSLGYTSSGLGPVPPRTTKRRALNKAL-----NEGNGLVVFDLELVAVLPDTNDTGLYTDLT 268          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: KOO23127.1 (amine oxidase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 129.0 bits (323), Expect = 1.900e-26
Identity = 66/146 (45.21%), Postives = 92/146 (63.01%), Query Frame = 0
Query:   34 KTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDDL 180
            +T+SGL Y D ++G G++P++GQ+    Y GY   +    LV FD +Y R++ YLVKHGNG   +G++E LHTMR+GG RR+V+P  LGYT    GP+PP A  R  L   +   E       +++D+ELVS+ DD  D G YDDL
Sbjct:   52 RTRSGLLYMDFKEGSGSTPRFGQLLRFHYVGYAPNTQKRTLVSFDSSYDRRSAYLVKHGNGFTCQGIEEALHTMRVGGRRRVVLPPALGYT-ADKGPMPPGAGARSKLFDAVTAGE------PLIFDLELVSIMDDLLDRGDYDDL 190          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: XP_001712520.1 (fkbp-like protein [Hemiselmis andersenii] >ABW98195.1 fkbp-like protein [Hemiselmis andersenii])

HSP 1 Score: 122.9 bits (307), Expect = 1.300e-24
Identity = 68/166 (40.96%), Postives = 95/166 (57.23%), Query Frame = 0
Query:    1 MGISFSSPSPFQPPSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSL 167
            +GI FS    F+  +   A N  ++S    +AF TKSGL+  D   GE   P+WG   II Y  Y  +S   K+    DTY + TP+L  HG G+ I+GL+E +H+M+ GG RR+V+P ELGY   GLGP+PP   +RK L   L + E  +    I+ D+ELV +
Sbjct:   60 IGIDFS----FENKNFAMAENLEKNS----LAFSTKSGLKIIDFLPGEAQMPQWGDFVIINYVLYKNSS--QKIEKISDTYQKNTPFLFIHGGGQTIKGLEEAVHSMKKGGKRRVVIPQELGYNVPGLGPIPPENSKRKKL---LSQEELENKSSNIILDIELVDI 212          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: XP_005708790.1 (immunophilin isoform 1 [Galdieria sulphuraria] >EME32270.1 immunophilin isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 116.3 bits (290), Expect = 1.300e-22
Identity = 61/169 (36.09%), Postives = 89/169 (52.66%), Query Frame = 0
Query:   14 PSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDDLTFD 183
            P+   A    + S+     FKT  G  Y D R G G SP WG + +I Y  Y       +L  F  TY  K P+  +HGNG+ I+GL+EG+ +M++GG RR+V+P  L Y+  GLGP+PP+   R+ L   L++         +  DVEL+ ++ D   + YY D   D
Sbjct:   81 PNNLLAQKVSESSEKSLTVFKTSGGTEYVDFRVGSGDSPAWGDMVVIHYVIYTVEG--GQLRKFYSTYDDKQPFAFRHGNGQTIKGLEEGIDSMKVGGRRRMVIPGSLAYSVAGLGPIPPSTSVRRKLADSLKQGNV------LSLDVELLKIWKDPVGMEYYSDFVPD 241          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: XP_005708791.1 (immunophilin isoform 2 [Galdieria sulphuraria] >EME32271.1 immunophilin isoform 2 [Galdieria sulphuraria])

HSP 1 Score: 113.6 bits (283), Expect = 8.200e-22
Identity = 62/178 (34.83%), Postives = 93/178 (52.25%), Query Frame = 0
Query:   14 PSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETN--------DPMGEIV-YDVELVSLYDDEADLGYYDDLTFD 183
            P+   A    + S+     FKT  G  Y D R G G SP WG + +I Y  Y       +L  F  TY  K P+  +HGNG+ I+GL+EG+ +M++GG RR+V+P  L Y+  GLGP+PP+   R+ L   L++ +            +G ++  DVEL+ ++ D   + YY D   D
Sbjct:   81 PNNLLAQKVSESSEKSLTVFKTSGGTEYVDFRVGSGDSPAWGDMVVIHYVIYTVEG--GQLRKFYSTYDDKQPFAFRHGNGQTIKGLEEGIDSMKVGGRRRMVIPGSLAYSVAGLGPIPPSTSVRRKLADSLKQGKRAIQCDTFYLKQIGNVLSLDVELLKIWKDPVGMEYYSDFVPD 256          
BLAST of NO01G03920 vs. NCBI_GenBank
Match: AFP65359.1 (fkbp-like protein (nucleomorph) [Chroomonas mesostigmatica CCMP1168])

HSP 1 Score: 112.8 bits (281), Expect = 1.400e-21
Identity = 63/174 (36.21%), Postives = 100/174 (57.47%), Query Frame = 0
Query:   16 AFAATNSVQDSDLP-PVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDEADLGYYDDLTFDSQYLQD 189
            +F   + + D DL    AF TKSGL+  +  +GEG +P+WG + +I Y  Y   +P   L   D T+ R  P+L  HG G+VIRG++E +H M++GG RR+++  E GY    LGP+PP  ++RK L  E  K E  +    IV+D+ELV +  +   LG + +   ++  +++
Sbjct:   64 SFPGFSVIADDDLKNKKAFSTKSGLKILEFTEGEGKAPEWGNLLVINYVIY-ELTP-KGLDQIDSTFGRNQPFLFAHGGGQVIRGIEETVHDMKMGGKRRVILSEETGYVNPTLGPVPPLNYQRKKLF-EKNKNEFLENKKLIVFDIELVDIKKNIHTLGNFSNFFLNNTEIRN 234          
The following BLAST results are available for this feature:
BLAST of NO01G03920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29325.11.300e-10786.70fkbp-type peptidyl-prolyl cis-trans isomerase [Nan... [more]
CBJ28081.13.800e-3544.12FKBP-type peptidyl-prolyl cis-trans isomerase [Ect... [more]
EJK63695.18.700e-3245.03hypothetical protein THAOC_15633 [Thalassiosira oc... [more]
XP_002288036.12.800e-3048.63predicted protein [Thalassiosira pseudonana CCMP13... [more]
OSX75750.18.100e-3044.07hypothetical protein BU14_0223s0022 [Porphyra umbi... [more]
KOO23127.11.900e-2645.21amine oxidase [Chrysochromulina sp. CCMP291][more]
XP_001712520.11.300e-2440.96fkbp-like protein [Hemiselmis andersenii] >ABW9819... [more]
XP_005708790.11.300e-2236.09immunophilin isoform 1 [Galdieria sulphuraria] >EM... [more]
XP_005708791.18.200e-2234.83immunophilin isoform 2 [Galdieria sulphuraria] >EM... [more]
AFP65359.11.400e-2136.21fkbp-like protein (nucleomorph) [Chroomonas mesost... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007903NSK007903Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03920.1NO01G03920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577230gene_403Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g6gene1303Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03920.1NO01G03920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03920 ID=NO01G03920|Name=NO01G03920|organism=Nannochloropsis oceanica|type=gene|length=699bp
ATGGGCATCTCCTTCTCCTCTCCCTCCCCTTTCCAGCCACCCTCTGCCTT
TGCTGCCACCAACAGCGTGCAAGACTCGGACTTACCGCCTGTTGCTTTCA
AAACCAAAAGTGGACTCCGGTACTATGATGTGCGAAAAGGTGAAGGTGCC
AGTCCGAAATGGGGTCAAGTCGCCATCATTCAATATGAGGGCTATATACG
TGCCTCGCCCTTCTCAAAACTCGTCTTGTTCGACGACACTTACGCTCGCA
AGACCCCTTATTTGGTGAAACATGGGAATGGTCGTGTCATCCGTGGGTTG
GACGAAGGGTTGCATACCATGAGACTGGGAGGACTGCGACGCATTGTCGT
ACCGCTTGAACTAGGGTACACCAAAACAGGCCTCGGTCCCCTCCCTCCCA
ATGCCTTTCGCCGCAAAATTTTGGTGCGTGAGCTCGAAAAGGCCGAGACC
AACGATCCGATGGGCGAAATAGTGTATGATGTGGAACTCGTATCATTGTA
CGATGATGAGGCGGATTTGGGGTATTATGACGACTTGACTTTTGACTCGC
AATATCTCCAAGATGGGATGGCGAAAAGCTTGCAGGAATTGAGGGATAAG
GGGGTAAAGGTACCATCAACCAAGACCTTTATGACCAAACCGGAGATTTT
GGGAAGTAGAAGGCAGGAGATAGAATTAAATTTGCCGGAGGAGGATTGA
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protein sequence of NO01G03920.1

>NO01G03920.1-protein ID=NO01G03920.1-protein|Name=NO01G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MGISFSSPSPFQPPSAFAATNSVQDSDLPPVAFKTKSGLRYYDVRKGEGA
SPKWGQVAIIQYEGYIRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGL
DEGLHTMRLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELEKAET
NDPMGEIVYDVELVSLYDDEADLGYYDDLTFDSQYLQDGMAKSLQELRDK
GVKVPSTKTFMTKPEILGSRRQEIELNLPEED*
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Synonyms
Publications