NO01G03850, NO01G03850 (gene) Nannochloropsis oceanica

Overview
NameNO01G03850
Unique NameNO01G03850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1136
Alignment locationchr1:1031290..1032425 -

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Properties
Property NameValue
DescriptionTRM112-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1031290..1032425 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005651UPF0434/Trm112
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
[Close]
BLAST of NO01G03850 vs. NCBI_GenBank
Match: EWM29320.1 (TRM112-like protein [Nannochloropsis gaditana])

HSP 1 Score: 227.6 bits (579), Expect = 2.700e-56
Identity = 112/149 (75.17%), Postives = 128/149 (85.91%), Query Frame = 0 
Query:   16 PLTSHPPL--LRPIRRRQAHNPS--AMRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEVA 161
            P  S PP   L   ++   H P+   MRLITHNMLKSN+KGV+NGFPLRIEA+KVEVKETEFN+EFVQNLLPK++W ALR ASK LGMDELPE+++E NKTD+SFL++VHKLLLDVHVLEG+LVCPETGRRFPIN GIPNMLLHEDEVA
Sbjct:   26 PPCSRPPRIPLNSTKKYHQHAPTTVVMRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEVA 174
[Close]
BLAST of NO01G03850 vs. NCBI_GenBank
Match: GAQ90207.1 (hypothetical protein KFL_006130040 [Klebsormidium nitens])

HSP 1 Score: 169.9 bits (429), Expect = 6.600e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 0 
Query:   38 MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEV 160
            MRL+THNML  NIKGV  G+PL+IEA K E KET+FNA F++++ PK++W ALREA+ +LG++ELPE+VE     DE FL   H +LL++H+ EGALVCPETGRRFP+++GIPNMLL+EDEV
Sbjct:    1 MRLLTHNMLACNIKGVTKGYPLKIEATKTEEKETDFNAGFLRHIYPKLDWKALREAAASLGLEELPEQVEPSQLEDEDFLRRFHHVLLEIHLEEGALVCPETGRRFPVSKGIPNMLLNEDEV 122
[Close]
BLAST of NO01G03850 vs. NCBI_GenBank
Match: XP_007223437.1 (multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Prunus persica] >ONI35118.1 hypothetical protein PRUPE_1G517100 [Prunus persica])

HSP 1 Score: 168.3 bits (425), Expect = 1.900e-38
Identity = 79/122 (64.75%), Postives = 96/122 (78.69%), Query Frame = 0 
Query:   38 MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEV 160
            MRL+THNML SNIKGV NGFPLRIE +KV  K+ +FNA+F++N+ PKIEW AL  A++ LG  ELPE+VE      E FL   H  LL++H+ EGALVCPETGRRFP+++GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVTNGFPLRIEIEKVVEKQVDFNADFLRNMFPKIEWKALVGAARTLGYVELPEEVEPSRLDSEDFLRKFHHALLELHLEEGALVCPETGRRFPVSKGIPNMLLHEDEV 122
[Close]
BLAST of NO01G03850 vs. NCBI_GenBank
Match: XP_008391084.1 (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Malus domestica] >XP_008391085.1 PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Malus domestica])

HSP 1 Score: 167.9 bits (424), Expect = 2.500e-38
Identity = 79/122 (64.75%), Postives = 95/122 (77.87%), Query Frame = 0 
Query:   38 MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEV 160
            MRL+THNML SNIKGV NGFPLRIE +KV  K+ EFN +F++N+ PKIEW AL  AS ++G  ELPE+VE      E FL   H  LL++H+ EGALVCPETGRRFP+++GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVTNGFPLRIEIEKVVEKQVEFNPDFLKNMFPKIEWKALVNASHSMGYVELPEEVEPSRLDSEDFLHKFHHALLELHLEEGALVCPETGRRFPVSKGIPNMLLHEDEV 122
[Close]
BLAST of NO01G03850 vs. NCBI_GenBank
Match: XP_009368441.1 (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Pyrus x bretschneideri] >XP_009368447.1 PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Pyrus x bretschneideri])

HSP 1 Score: 167.9 bits (424), Expect = 2.500e-38
Identity = 79/122 (64.75%), Postives = 96/122 (78.69%), Query Frame = 0 
Query:   38 MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEV 160
            MRL+THNML SNIKGV NGFPLRIE +KV  K  +FN EF++N+LPKIEW AL  A++++G  ELPE+VE      E FL   H  LL++H+ EGALVCPETGRRFP+++GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVTNGFPLRIEIEKVVEKPVDFNPEFLRNMLPKIEWKALVNAARSMGYVELPEEVEPSTLYSEDFLHKFHHALLELHLEEGALVCPETGRRFPVSKGIPNMLLHEDEV 122
[Close]
BLAST of NO01G03850 vs. NCBI_GenBank
Match: XP_023918915.1 (multifunctional methyltransferase subunit TRM112 homolog A-like [Quercus suber])

HSP 1 Score: 167.5 bits (423), Expect = 3.300e-38
Identity = 77/122 (63.11%), Postives = 96/122 (78.69%), Query Frame = 0 
Query:   38 MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEV 160
            MRL+THNML SNIKGV NGFPLRIE +KV  K+ +FNA+F++N+ PKIEW A  +A+K +G  ELPE+V+      E FL   H  LL++H+ EGALVCPETGRRFP+++GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVSNGFPLRIEVEKVAEKQVDFNADFLRNMFPKIEWKAFVDAAKTIGYAELPEEVDSSALESEEFLNKFHHALLELHLEEGALVCPETGRRFPVSKGIPNMLLHEDEV 122
[Close]
BLAST of NO01G03850 vs. NCBI_GenBank
Match: XP_008219426.1 (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Prunus mume])

HSP 1 Score: 167.2 bits (422), Expect = 4.300e-38
Identity = 79/122 (64.75%), Postives = 95/122 (77.87%), Query Frame = 0 
Query:   38 MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEV 160
            MRL+THNML SNIKGV NGFPLRIE +KV  K+ +FNA+F++N+ PKIEW AL  A+  LG  ELPE+VE      E FL   H  LL++H+ EGALVCPETGRRFP+++GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVANGFPLRIEIEKVVEKQVDFNADFLRNMFPKIEWKALVGAAHTLGYVELPEEVEPSRLDSEDFLRKFHHALLELHLEEGALVCPETGRRFPVSKGIPNMLLHEDEV 122
[Close]
BLAST of NO01G03850 vs. NCBI_GenBank
Match: XP_009373146.1 (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Pyrus x bretschneideri] >XP_009373147.1 PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Pyrus x bretschneideri] >XP_018506649.1 PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Pyrus x bretschneideri] >XP_018506650.1 PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Pyrus x bretschneideri])

HSP 1 Score: 167.2 bits (422), Expect = 4.300e-38
Identity = 78/122 (63.93%), Postives = 95/122 (77.87%), Query Frame = 0 
Query:   38 MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEV 160
            MRL+THNML SNIKGV NGFPLRIE +KV  K+ EFN +F++N+ PKIEW AL  AS ++G  ELPE+VE      E FL   H  LL++H+ EGALVCPETGRRFP+++G+PNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVTNGFPLRIEIEKVVEKQVEFNPDFLKNMFPKIEWKALVNASHSMGYVELPEEVEPSRLDSEDFLHKFHHALLELHLEEGALVCPETGRRFPVSKGLPNMLLHEDEV 122
[Close]
BLAST of NO01G03850 vs. NCBI_GenBank
Match: XP_021817320.1 (multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Prunus avium])

HSP 1 Score: 167.2 bits (422), Expect = 4.300e-38
Identity = 79/122 (64.75%), Postives = 95/122 (77.87%), Query Frame = 0 
Query:   38 MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEV 160
            MRL+THNML SNIKGV NGFPLRIE +KV  K+ +FNA+F++N+ PKIEW AL  A+  LG  ELPE+VE      E FL   H  LL++H+ EGALVCPETGRRFP+++GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVTNGFPLRIEIEKVVEKQVDFNADFLRNMFPKIEWKALVGAAHTLGYVELPEEVEPSRLDSEDFLRKFHHALLELHLEEGALVCPETGRRFPVSKGIPNMLLHEDEV 122
[Close]
BLAST of NO01G03850 vs. NCBI_GenBank
Match: XP_023767786.1 (multifunctional methyltransferase subunit TRM112-like protein At1g22270 isoform X2 [Lactuca sativa] >PLY82454.1 hypothetical protein LSAT_2X108521 [Lactuca sativa])

HSP 1 Score: 166.0 bits (419), Expect = 9.600e-38
Identity = 77/123 (62.60%), Postives = 99/123 (80.49%), Query Frame = 0 
Query:   38 MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTD-ESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEV 160
            MRL+THNML SNIKGV+NGFPLRIE +KV  K+ +FN +F++N+  KI+W AL +ASK +G  ELPE+V + +  D + FL+  H  LL++H+ EGALVCPETGRRFP+N+GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVINGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIDWKALADASKIMGYAELPEEVPDASVLDSDEFLQKFHHALLELHLEEGALVCPETGRRFPVNKGIPNMLLHEDEV 123
The following BLAST results are available for this feature:
BLAST of NO01G03850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29320.12.700e-5675.17TRM112-like protein [Nannochloropsis gaditana][more]
GAQ90207.16.600e-3963.11hypothetical protein KFL_006130040 [Klebsormidium ... [more]
XP_007223437.11.900e-3864.75multifunctional methyltransferase subunit TRM112-l... [more]
XP_008391084.12.500e-3864.75PREDICTED: multifunctional methyltransferase subun... [more]
XP_009368441.12.500e-3864.75PREDICTED: multifunctional methyltransferase subun... [more]
XP_023918915.13.300e-3863.11multifunctional methyltransferase subunit TRM112 h... [more]
XP_008219426.14.300e-3864.75PREDICTED: multifunctional methyltransferase subun... [more]
XP_009373146.14.300e-3863.93PREDICTED: multifunctional methyltransferase subun... [more]
XP_021817320.14.300e-3864.75multifunctional methyltransferase subunit TRM112-l... [more]
XP_023767786.19.600e-3862.60multifunctional methyltransferase subunit TRM112-l... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007912NSK007912Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03850.1NO01G03850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577211gene_395Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g13gene1309Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03850.1NO01G03850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03850 ID=NO01G03850|Name=NO01G03850|organism=Nannochloropsis oceanica|type=gene|length=1136bp
AGAATGGCACATCCCATGTGTCCTCCCATGGTCGAGCCACTGTGATAACA
GGCCTACCATCTCTGCCAATTCAAATGCAGCCACGTGGATGACAACCATA
GATTTCCATGCATGTTCTGGCTGCGATACTGTCCTCGAATTCCCTCCTCA
CCCAGGCCTCTGACCTCCCACCCACCCCTACTTCGCCCCATTCGACGCAG
GCAGGCACATAATCCGTCAGCCATGCGGCTCATCACGCACAACATGCTCA
AGAGCAACATCAAGGGCGTAGTAAATGGCTTTCCCTTGAGAATAGAGGCC
GACAAGGTGGAGGTGAAGGAGACGGAGTTCAACGCAGgtatgttgacatg
gcattgggcagagaatggagaacggaaataggaaggaggtgtctgccggc
gatgtgtacttgtaatgattgcctacgcttgcatggaacgtaatcgctcg
tctaatcttcactgggctgcatgtgtatcgttatgtctgtgtagcaatgc
ctaagtgtgtgctgcttcgcataccgtcgtatccatgtacactttctccg
caaccccccacacgacacagAATTTGTGCAAAATTTGTTGCCGAAGATCG
AGTGGGGGGCACTTCGGGAAGCAAGCAAAGCGTTGGGAATGGATGAGCTG
CCGGAAAAGgtaagaactacagcgctccgttcctccctcacagctccccc
tcctcctcccacctactagctttcaccctcgcctcacccacagGTTGAAG
AAGGCAACAAGACAGACGAATCATTTTTGGAAATAGTGCACAAGCTGTTG
CTGGACGTACATGTGCTGGAGGGGGCGTTGGTCTGCCCCGAGACAGGGAG
GCGGTTTCCCATTAATGAGGGCATTCCAAATATGTTGCTGCATGAGGACG
AGGTGGCGTAGAAGAAAGGGGAGGAGAGGAAGAGATAAGGAGGGAAGAAG
AGAGAGAGACAGATATGGGTATGAATGTAAAGATAGCCAAAAGAAACAAT
GCCATCGCAATTAAGACGACGATGGGACACATGTGCTATTTCCGTGTGTT
AGATTTTCTTTTCGGAGAGGAAAAAAAAGGCACGCATATGAACTTTTCAA
TTGCAATATGCTGAGAGAATGAATTCCAATAAGAAT
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protein sequence of NO01G03850.1

>NO01G03850.1-protein ID=NO01G03850.1-protein|Name=NO01G03850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MFWLRYCPRIPSSPRPLTSHPPLLRPIRRRQAHNPSAMRLITHNMLKSNI
KGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMD
ELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIP
NMLLHEDEVA*
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Synonyms
Publications