NO01G03850.1, NO01G03850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03850.1
Unique NameNO01G03850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr1:1031290..1032425 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1031290..1032425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G03850.1 vs.
Match: EWM29320.1 (TRM112-like protein [Nannochloropsis gaditana])

HSP 1 Score: 227.6 bits (579), Expect = 2.700e-56
Identity = 112/149 (75.17%), Postives = 128/149 (85.91%), Query Frame = 0 
Query:   16 PLTSHPPL--LRPIRRRQAHNPSA--MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIPNMLLHEDEVA 161
            P  S PP   L   ++   H P+   MRLITHNMLKSN+KGV+NGFPLRIEA+KVEVKETEFN+EFVQNLLPK++W ALR ASK LGMDELPE+++E NKTD+SFL++VHKLLLDVHVLEG+LVCPETGRRFPIN GIPNMLLHEDEVA
Sbjct:   26 PPCSRPPRIPLNSTKKYHQHAPTTVVMRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEVA 174
The following BLAST results are available for this feature:
BLAST of NO01G03850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29320.12.700e-5675.17TRM112-like protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03850NO01G03850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03850.1NO01G03850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03850.1.cds1NO01G03850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03850.1.cds2NO01G03850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03850.1.cds3NO01G03850.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03850.1 ID=NO01G03850.1|Name=NO01G03850.1|organism=Nannochloropsis oceanica|type=mRNA|length=819bp
AGAATGGCACATCCCATGTGTCCTCCCATGGTCGAGCCACTGTGATAACA
GGCCTACCATCTCTGCCAATTCAAATGCAGCCACGTGGATGACAACCATA
GATTTCCATGCATGTTCTGGCTGCGATACTGTCCTCGAATTCCCTCCTCA
CCCAGGCCTCTGACCTCCCACCCACCCCTACTTCGCCCCATTCGACGCAG
GCAGGCACATAATCCGTCAGCCATGCGGCTCATCACGCACAACATGCTCA
AGAGCAACATCAAGGGCGTAGTAAATGGCTTTCCCTTGAGAATAGAGGCC
GACAAGGTGGAGGTGAAGGAGACGGAGTTCAACGCAGAATTTGTGCAAAA
TTTGTTGCCGAAGATCGAGTGGGGGGCACTTCGGGAAGCAAGCAAAGCGT
TGGGAATGGATGAGCTGCCGGAAAAGGTTGAAGAAGGCAACAAGACAGAC
GAATCATTTTTGGAAATAGTGCACAAGCTGTTGCTGGACGTACATGTGCT
GGAGGGGGCGTTGGTCTGCCCCGAGACAGGGAGGCGGTTTCCCATTAATG
AGGGCATTCCAAATATGTTGCTGCATGAGGACGAGGTGGCGTAGAAGAAA
GGGGAGGAGAGGAAGAGATAAGGAGGGAAGAAGAGAGAGAGACAGATATG
GGTATGAATGTAAAGATAGCCAAAAGAAACAATGCCATCGCAATTAAGAC
GACGATGGGACACATGTGCTATTTCCGTGTGTTAGATTTTCTTTTCGGAG
AGGAAAAAAAAGGCACGCATATGAACTTTTCAATTGCAATATGCTGAGAG
AATGAATTCCAATAAGAAT
back to top

protein sequence of NO01G03850.1

>NO01G03850.1-protein ID=NO01G03850.1-protein|Name=NO01G03850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MFWLRYCPRIPSSPRPLTSHPPLLRPIRRRQAHNPSAMRLITHNMLKSNI
KGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEWGALREASKALGMD
ELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCPETGRRFPINEGIP
NMLLHEDEVA*
back to top

mRNA from alignment at chr1:1031290..1032425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03850.1 ID=NO01G03850.1|Name=NO01G03850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1136bp|location=Sequence derived from alignment at chr1:1031290..1032425- (Nannochloropsis oceanica)
AGAATGGCACATCCCATGTGTCCTCCCATGGTCGAGCCACTGTGATAACA
GGCCTACCATCTCTGCCAATTCAAATGCAGCCACGTGGATGACAACCATA
GATTTCCATGCATGTTCTGGCTGCGATACTGTCCTCGAATTCCCTCCTCA
CCCAGGCCTCTGACCTCCCACCCACCCCTACTTCGCCCCATTCGACGCAG
GCAGGCACATAATCCGTCAGCCATGCGGCTCATCACGCACAACATGCTCA
AGAGCAACATCAAGGGCGTAGTAAATGGCTTTCCCTTGAGAATAGAGGCC
GACAAGGTGGAGGTGAAGGAGACGGAGTTCAACGCAGGTATGTTGACATG
GCATTGGGCAGAGAATGGAGAACGGAAATAGGAAGGAGGTGTCTGCCGGC
GATGTGTACTTGTAATGATTGCCTACGCTTGCATGGAACGTAATCGCTCG
TCTAATCTTCACTGGGCTGCATGTGTATCGTTATGTCTGTGTAGCAATGC
CTAAGTGTGTGCTGCTTCGCATACCGTCGTATCCATGTACACTTTCTCCG
CAACCCCCCACACGACACAGAATTTGTGCAAAATTTGTTGCCGAAGATCG
AGTGGGGGGCACTTCGGGAAGCAAGCAAAGCGTTGGGAATGGATGAGCTG
CCGGAAAAGGTAAGAACTACAGCGCTCCGTTCCTCCCTCACAGCTCCCCC
TCCTCCTCCCACCTACTAGCTTTCACCCTCGCCTCACCCACAGGTTGAAG
AAGGCAACAAGACAGACGAATCATTTTTGGAAATAGTGCACAAGCTGTTG
CTGGACGTACATGTGCTGGAGGGGGCGTTGGTCTGCCCCGAGACAGGGAG
GCGGTTTCCCATTAATGAGGGCATTCCAAATATGTTGCTGCATGAGGACG
AGGTGGCGTAGAAGAAAGGGGAGGAGAGGAAGAGATAAGGAGGGAAGAAG
AGAGAGAGACAGATATGGGTATGAATGTAAAGATAGCCAAAAGAAACAAT
GCCATCGCAATTAAGACGACGATGGGACACATGTGCTATTTCCGTGTGTT
AGATTTTCTTTTCGGAGAGGAAAAAAAAGGCACGCATATGAACTTTTCAA
TTGCAATATGCTGAGAGAATGAATTCCAATAAGAAT
back to top

Coding sequence (CDS) from alignment at chr1:1031290..1032425-

>NO01G03850.1 ID=NO01G03850.1|Name=NO01G03850.1|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at chr1:1031290..1032425- (Nannochloropsis oceanica)
ATGTTCTGGCTGCGATACTGTCCTCGAATTCCCTCCTCACCCAGGCCTCT
GACCTCCCACCCACCCCTACTTCGCCCCATTCGACGCAGGCAGGCACATA
ATCCGTCAGCCATGCGGCTCATCACGCACAACATGCTCAAGAGCAACATC
AAGGGCGTAGTAAATGGCTTTCCCTTGAGAATAGAGGCCGACAAGGTGGA
GGTGAAGGAGACGGAGTTCAACGCAGAATTTGTGCAAAATTTGTTGCCGA
AGATCGAGTGGGGGGCACTTCGGGAAGCAAGCAAAGCGTTGGGAATGGAT
GAGCTGCCGGAAAAGGTTGAAGAAGGCAACAAGACAGACGAATCATTTTT
GGAAATAGTGCACAAGCTGTTGCTGGACGTACATGTGCTGGAGGGGGCGT
TGGTCTGCCCCGAGACAGGGAGGCGGTTTCCCATTAATGAGGGCATTCCA
AATATGTTGCTGCATGAGGACGAGGTGGCGTAG
back to top
Synonyms
Publications