NO01G03840, NO01G03840 (gene) Nannochloropsis oceanica

Overview
NameNO01G03840
Unique NameNO01G03840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1443
Alignment locationchr1:1029733..1031175 +

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Properties
Property NameValue
Description40s ribosomal protein s14
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1029733..1031175 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
Homology
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: KXZ46647.1 (hypothetical protein GPECTOR_42RPS14 [Gonium pectorale])

HSP 1 Score: 246.9 bits (629), Expect = 5.200e-62
Identity = 122/150 (81.33%), Postives = 135/150 (90.00%), Query Frame = 0 
Query:   48 KRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            K+G   +      ++LGP   EGEHVFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDE+SPYAAMLAAQDVA KCKELGITA+HIK+RATGGN+TK+PGPGAQ ALRALAR+G+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:    4 KKGKGEEDKPKEVVSLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 153
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BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_021861490.1 (40S ribosomal protein S14 [Spinacia oleracea])

HSP 1 Score: 246.9 bits (629), Expect = 5.200e-62
Identity = 121/149 (81.21%), Postives = 133/149 (89.26%), Query Frame = 0 
Query:   49 RGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            R   T+     T+ LGP   EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:    3 RNRKTREPKEETITLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 151
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: GAY33070.1 (hypothetical protein CUMW_005470, partial [Citrus unshiu])

HSP 1 Score: 246.9 bits (629), Expect = 5.200e-62
Identity = 128/172 (74.42%), Postives = 144/172 (83.72%), Query Frame = 0 
Query:   31 PTNPQVFR-----LSHSSSKMAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            P    VFR     LS SS+ M++R   T+      + LGP   +GEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:   32 PAAASVFRGFCDQLSVSSAAMSRR--KTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 201
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: EMS67175.1 (40S ribosomal protein S14 [Triticum urartu])

HSP 1 Score: 246.5 bits (628), Expect = 6.900e-62
Identity = 126/164 (76.83%), Postives = 138/164 (84.15%), Query Frame = 0 
Query:   34 PQVFRLSHSSSKMAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            P V  + H  S   K    T+      + LGP   EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLA+QDVAV+CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTPVPTDSTRRK GRRGRRL
Sbjct:   19 PPVQCIGHRKSGRKK----TREPKEENVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAVRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 178
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_010683691.1 (PREDICTED: 40S ribosomal protein S14-2 [Beta vulgaris subsp. vulgaris] >KMT06755.1 hypothetical protein BVRB_7g159150 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 246.5 bits (628), Expect = 6.900e-62
Identity = 121/145 (83.45%), Postives = 132/145 (91.03%), Query Frame = 0 
Query:   53 TKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            TK     T+ LGP   EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:    6 TKEPKEETVTLGPTVKEGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_006631947.2 (PREDICTED: 40S ribosomal protein S14 [Lepisosteus oculatus])

HSP 1 Score: 246.5 bits (628), Expect = 6.900e-62
Identity = 123/155 (79.35%), Postives = 141/155 (90.97%), Query Frame = 0 
Query:   43 SSKMAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            SS+MA R G  K ++   ++LGP+ AEGE+VFGV HIFASFNDTFVHVTDLSG+ET+ RVTGGMKVKADRDE+SPYAAMLAAQDVA +CKELGITA+HIK+RATGGN+TK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:    8 SSEMAPRKGKEKKEEQ-VISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 161
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_020260383.1 (40S ribosomal protein S14-3 [Asparagus officinalis] >ONK71299.1 uncharacterized protein A4U43_C04F7040 [Asparagus officinalis])

HSP 1 Score: 246.5 bits (628), Expect = 6.900e-62
Identity = 124/152 (81.58%), Postives = 136/152 (89.47%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            M+KR      +D+ T  LGP   EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:    1 MSKRKTREPKEDNVT--LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_021765192.1 (40S ribosomal protein S14-2 [Chenopodium quinoa] >XP_021766528.1 40S ribosomal protein S14-2 [Chenopodium quinoa])

HSP 1 Score: 246.5 bits (628), Expect = 6.900e-62
Identity = 124/152 (81.58%), Postives = 136/152 (89.47%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            M+KR   TK     T+ LGP   EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:    1 MSKR--KTKEPKVETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: GAX73198.1 (hypothetical protein CEUSTIGMA_g651.t1 [Chlamydomonas eustigma])

HSP 1 Score: 246.5 bits (628), Expect = 6.900e-62
Identity = 121/137 (88.32%), Postives = 130/137 (94.89%), Query Frame = 0 
Query:   61 LNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            + LGP   EGEHVFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDE+SPYAAMLAAQDVA KCKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALAR+G+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:   14 VTLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARTGIKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: PPR89531.1 (hypothetical protein GOBAR_AA31162 [Gossypium barbadense])

HSP 1 Score: 246.5 bits (628), Expect = 6.900e-62
Identity = 125/162 (77.16%), Postives = 139/162 (85.80%), Query Frame = 0 
Query:   36 VFRLSHSSSKMAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            VF LS S  +   R    +  +  T NLGP   EGEHVFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:   26 VFELSFSFPESMSRRKVREPKEENT-NLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 186
The following BLAST results are available for this feature:
BLAST of NO01G03840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KXZ46647.15.200e-6281.33hypothetical protein GPECTOR_42RPS14 [Gonium pecto... [more]
XP_021861490.15.200e-6281.2140S ribosomal protein S14 [Spinacia oleracea][more]
GAY33070.15.200e-6274.42hypothetical protein CUMW_005470, partial [Citrus ... [more]
EMS67175.16.900e-6276.8340S ribosomal protein S14 [Triticum urartu][more]
XP_010683691.16.900e-6283.45PREDICTED: 40S ribosomal protein S14-2 [Beta vulga... [more]
XP_006631947.26.900e-6279.35PREDICTED: 40S ribosomal protein S14 [Lepisosteus ... [more]
XP_020260383.16.900e-6281.5840S ribosomal protein S14-3 [Asparagus officinalis... [more]
XP_021765192.16.900e-6281.5840S ribosomal protein S14-2 [Chenopodium quinoa] >... [more]
GAX73198.16.900e-6288.32hypothetical protein CEUSTIGMA_g651.t1 [Chlamydomo... [more]
PPR89531.16.900e-6277.16hypothetical protein GOBAR_AA31162 [Gossypium barb... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007913NSK007913Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03840.1NO01G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577208gene_394Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g14gene1310Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03840.1NO01G03840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03840 ID=NO01G03840|Name=NO01G03840|organism=Nannochloropsis oceanica|type=gene|length=1443bp
AGCCGCTCCTCTCGCCCTCACGTCTTCTGCTCCCTTTCTTCCGCCGCCTG
GCTTTTCACGCATTCCAAACCAAGGCTCAGACAACCCTTGACCCTTAACG
TGATAACTGTTTCCAACATGAGGTCCTCGAGCAGAGATGGAGGCGAATGG
TTATTGTGCCTTAGCTCCTCTCCCATGCACCATCAGCCGCCTCCCTCACC
TCTCTACTTCGCCCCTCAATCATCACCCTACCAACCCACAGGTCTTTCGC
CTTTCCCACTCTTCATCAAAGATGgtaagtccacgcgttatggcgaagat
tggacgttgacagatgtgtattgggattgcgaatgtggttttcggtttgt
atcgcaatggtggacatgctcctttccactcgtcacgggaagaagcatca
cccttgtcgtggccttacacggctagcagccaaggaggactacagccctt
gtgtacatttatgagaaaaatgatgagtgtaacgagacacgtatgctttc
catgtccctccgacaaagcacagacacagagcaagtcctcatcatcttcc
ctcccacgtgcttccttcctttttacccacccacctaaatagGCAAAGCG
AGGAGGTGCAACCAAGCTGGACGACTCCACAACCCTGAACCTGGGCCCCA
AGGCCGCGGAAGGGGAGCACGTCTTCGGTGTCGCTCACATATTCGCTTCC
TTCAACGACACCTTCGTGCATGTCACTGATTTGTCTGGACGAGAGACCCT
GTCACGTGTCACGGGAGGGATGAAGGTCAAGGCCGATCGTGACGAGGCGT
CCCCGTACGCGGCCATGCTTGCCGCACAGGACGTGGCCGTCAAGTGCAAG
GAGCTGGGCATCACGGCCGTGCACATCAAGATGCGTGCGACGGGCGGGAA
CAAGACCAAGTCCCCGGGGCCGGGAGCGCAACATGCTTTGCGTGCGTTGG
CACGTTCGGGCTTGAAGATTGGGCGTATTGAGGATGTGACTCCTGTCCCC
ACGGATAGCACCCGCCGAAAGAGTGGTCGCCGTGGTCGTCGTTTGTAAAC
AAAGGAAGCAGAGAGTCGAAAGGGGGGACGGAGTGTGGGAGGGAAGGAGG
GTAGTAGGATGGAAAATTATGTTTATGCGATGCGGGGCGGGAGTTGCTTT
GTCTCCTTTTGTTTGTGAGCATTTAAACAAACAGAAAAGAGGCGGGACAA
GTCGCCCTTCCGCGACGAGGACGGTGAAGCGAGGAGGGGTATCAAGAGAG
GGCGCACCCACGCTCTTCTTTCCTTAACTCCTTCCCCTGGCCTTTTCACC
TTCTCTTTTCGGGATCGGGGTTTTCCTTGTTCTGGATTTCTTGTCTTGAA
GACATTTCTGGGTGGGATTTATCGGAGGTTGAAGGAGATAAGAAGATTCA
GAGGATAAAAGAAGGAATGAGGGGCTTCGCGGCCCGGAAAGGA
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protein sequence of NO01G03840.1

>NO01G03840.1-protein ID=NO01G03840.1-protein|Name=NO01G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MEANGYCALAPLPCTISRLPHLSTSPLNHHPTNPQVFRLSHSSSKMAKRG
GATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLS
RVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNK
TKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL*
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Synonyms
Publications