NO01G03700, NO01G03700 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G03700
Unique Name	NO01G03700
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2246
Alignment location	chr1:991134..993379 -

Link to JBrowse

Properties


Property Name	Value
Description	Far upstream element binding protein 3

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:991134..993379 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036612	KH_dom_type_1_sf
IPR004088	KH_dom_type_1
IPR004087	KH_dom

Homology

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BLAST of NO01G03700 vs. NCBI_GenBank
Match: XP_005854787.1 (hypothetical protein NGA_0401010 [Nannochloropsis gaditana CCMP526] >EKU21576.1 hypothetical protein NGA_0401010 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 709.9 bits (1831), Expect = 7.600e-201
Identity = 533/683 (78.04%), Postives = 568/683 (83.16%), Query Frame = 0

Query:    1 MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESDVPRKREKVYIPKDNTEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAPDGEPQEDMHVLIEGTDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEIKGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVGLVIGRGGENIQKLTAKTGCFVQVSKETEPGEQTRVVSIKGPTKEGVAEALKMIQEQVDEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAATLTVPVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAPDMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLIIGRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYEIEMKLMNEGCRDAQGNYIPYQPSPAFMVPVGPNGVPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPTQYWDXXXXXXQHYGEEYARKQYDTWAPPDGTPPPPGITLPSPAEAAAAIAALSKTA 684
            MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFG+GES+ PRKREK++IPKDN +FNFFSLLIGPRGSTQKRLQE+TGARINIR  GS+G K E+AP+GEPQEDMHVLIEGT+EQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAE+KGGY PG   +GG G   +GHYGP R++PGLGFGAEPETG+MKIPSSMVGLVIGRGGENIQK+TAKTGCFVQVSKETEPGE TR VS+KGPTKEGVAEAL+MIQ QVDEAQ             XXXXXXXXXXXXXXXXX G AATLTVPVPS+KVGLIIGRGGSTIR IQ+RTGANV IPSA QGD+P++R +T                                    GGTAL+MHIDQ+KVGLIIGRSGAVIKEIQHRT TRIQVPTTAEP ++PPVRAVTIMGPGDGPERARYEIE KLMNEGCRDA GNYIPYQPSPAF+VPVGP GVP    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX          DPTQYWD       HYGEEYARKQY TWAPP+GTPPPPGI+LPS A+A AAIAAL +T+
Sbjct:    1 MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIR--GSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGG--DEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQVDEAQ----AERSKPRAGXXXXXXXXXXXXXXXXXYGVAATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVT------------------------------------GGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLMNEGCRDAHGNYIPYQPSPAFIVPVGPGGVPIMPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQSDPYAAYYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGAVGGEAAYDPTQYWDQFWAYAVHYGEEYARKQYGTWAPPEGTPPPPGISLPSAAQAMAAIAALGQTS 639

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BLAST of NO01G03700 vs. NCBI_GenBank
Match: EWM29308.1 (far upstream element binding protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 706.4 bits (1822), Expect = 8.400e-200
Identity = 509/657 (77.47%), Postives = 541/657 (82.34%), Query Frame = 0

Query:    1 MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESDVPRKREKVYIPKDNTEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAPDGEPQEDMHVLIEGTDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEIKGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVGLVIGRGGENIQKLTAKTGCFVQVSKETEPGEQTRVVSIKGPTKEGVAEALKMIQEQVDEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAATLTVPVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAPDMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLIIGRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYEIEMKLMNEGCRDAQGNYIPYQPSPAFMVPVGPNGVPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPTQYWDXXXXXXQHYGEEYARKQYDTWAPPDG 658
            MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFG+GES+ PRKREK++IPKDN +FNFFSLLIGPRGSTQKRLQE+TGARINIR  GS+G K E+AP+GEPQEDMHVLIEGT+EQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAE+KGGY PG   +GG G   +GHYGP R++PGLGFGAEPETG+MKIPSSMVGLVIGRGGENIQK+TAKTGCFVQVSKETEPGE TR VS+KGPTKEGVAEAL+MIQ Q  E                                 G AATLTVPVPS+KVGLIIGRGGSTIR IQ+RTGANV IPSA QGD+P++R +T+SAPDM AAE ARSEI  LLA GPG              AL+MHIDQ+KVGLIIGRSGAVIKEIQHRT TRIQVPTTAEP ++PPVRAVTIMGPGDGPERARYEIE KLMNEGCRDA GNYIPYQPSPAF+VPVGP GVP    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX          DPTQYWD       HYGEEYARKQY TWAPP+G
Sbjct:   23 MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIR--GSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGG--DEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQSSE--------------------------------YGVAATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGXXXXXXXXXXXXXXALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLMNEGCRDAHGNYIPYQPSPAFIVPVGPGGVPIMPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQSDPYAAYYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGAVGGEAAYDPTQYWDQFWAYAVHYGEEYARKQYGTWAPPEG 643

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BLAST of NO01G03700 vs. NCBI_GenBank
Match: XP_005854823.1 (hypothetical protein NGA_0401020, partial [Nannochloropsis gaditana CCMP526] >EKU21535.1 hypothetical protein NGA_0401020, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 433.0 bits (1112), Expect = 1.800e-117
Identity = 224/261 (85.82%), Postives = 243/261 (93.10%), Query Frame = 0

Query:    1 MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESDVPRKREKVYIPKDNTEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAPDGEPQEDMHVLIEGTDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEIKGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVGLVIGRGGENIQKLTAKTGCFVQVSKETEPGEQTRVVSIKGPTKEGVAEALKMIQEQVDEAQ 262
            MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFG+GES+ PRKREK++IPKDN +FNFFSLLIGPRGSTQKRLQE+TGARINIR  GS+G K E+AP+GEPQEDMHVLIEGT+EQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAE+KGGY PG   +GG G   +GHYGP R++PGLGFGAEPETG+MKIPSSMVGLVIGRGGENIQK+TAKTGCFVQVSKETEPGE TR VS+KGPTKEGVAEAL+MIQ QVDEAQ
Sbjct:   39 MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIR--GSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGG--DEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQVDEAQ 295

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BLAST of NO01G03700 vs. NCBI_GenBank
Match: XP_009536185.1 (hypothetical protein PHYSODRAFT_339892 [Phytophthora sojae] >EGZ08013.1 hypothetical protein PHYSODRAFT_339892 [Phytophthora sojae])

HSP 1 Score: 270.0 bits (689), Expect = 2.000e-68
Identity = 186/463 (40.17%), Postives = 251/463 (54.21%), Query Frame = 0

Query:    7 DAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESD---------VPRKREKVYIPKDN-TEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAPDGEPQEDMHVLIEG-TDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEIKGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVGLVIGRGGENIQKLTAKTGCFVQVSKETEPGEQT--RVVSIKGPTKEGVAEALKMIQEQVDEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAATLTVPVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAPDMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLIIGRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYEIEMKLM 457
            D +ARA+ IAARL A+  P G   G ++   EG+ D           +KR+KVYIP D   + NF  LLIGPRGS QKR+++ +GARI IRG GS    T D PD    E++HVLI   TDE VA A+  VE ILF+P +AM+LK  QLR +AE+ G          G   D D H G G A  G G      + +MK+P  +VG +IGRGGE I+ L  K+G  +Q+ +E E   QT  R V+I G  ++ +  A ++IQ  +DE Q                                   ++ + VP+E+VGLIIGRGG TI+AIQ RTG +V IP     + P +R ITI    M A E A+ EIH ++   PG   G G      G  + M +  ++VG+IIG+ G  IK IQ R   RIQ+P   +PGSNPPVR ++I GP      A+ E++M ++
Sbjct:    5 DPVARAREIAARLAAAAIPGGDALGKRKSRWEGDVDGGVRPAPGMGEKKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGSSKDPTGD-PD--ENEELHVLITADTDEAVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNDNY----GGPRDGDSHSGGGNAHYGPGSSDGQSSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRFVNITG-NQDALDLAQRLIQNLIDERQQNQGAGGFRERDDRDRMARYGGINPDG------TDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPDMRLITIRG-TMEAKEAAKFEIHSMINEEPGQRHGYG---MASGQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVPDPGSNPPVRTISIQGPPQNLTGAKEEVDMVIL 449

[Close]

BLAST of NO01G03700 vs. NCBI_GenBank
Match: XP_002906007.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY67359.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 265.8 bits (678), Expect = 3.800e-67
Identity = 189/475 (39.79%), Postives = 257/475 (54.11%), Query Frame = 0

Query:    7 DAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESD---------VPRKREKVYIPKDN-TEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAPDGEPQEDMHVLIEG-TDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEIKGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVGLVIGRGGENIQKLTAKTGCFVQVSKETEPGEQT--RVVSIKGPTKEGVAEALKMIQEQVDEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAATLTVPVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAPDMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLIIGRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYEIEMK-LMNEGCRDAQGNY 468
            D +ARA+ IAARL A+  P G   G ++   EG++D           +KR+KVYIP D   + NF  LLIGPRGS QKR+++ +GARI IRG GS    T D PD    E++HVLI   TDE VA A+  VE+ILF+P +AM+LK  QLR +AE+ G        +   G     +YGPG         A   + +MK+P  +VG +IGRGGE I+ L  K+G  +Q+ +E E   QT  R V+I G  ++ +  A K+IQ  +DE Q                                 + ++ + VP+E+VGLIIGRGG TI+AIQ RTG +V IP     + P +R ITI    M A E A+ EI  +++  PG   G G      G  + M +  ++VG+IIG+ G  IK IQ R   RIQ+P  A+ GSNPPVR ++I GP      A+ E++M  L   GC   QG Y
Sbjct:    3 DPVARAREIAARLAAAAIPGGDALGKRKSRWEGDADGGMRPAPGMGEKKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGSSKDPTGD-PD--ENEELHVLITADTDEAVAKAQSAVEEILFNPQQAMKLKQEQLRKVAELNGTLNENYSESHSIG---QNNYGPGN-------DAHSSSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTADRFVNIAG-NQDTLELAQKLIQNLIDERQQNQGAGGFRERDDRDRMARYGGINPDG------SDSVEIMVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPEMRLITIRG-TMEAKEAAKFEIQSMVSDEPGQRHGYG---ATSGQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADEGSNPPVRTISIQGPAPNLAGAKEEVDMVILQGAGC---QGGY 450

[Close]

BLAST of NO01G03700 vs. NCBI_GenBank
Match: ETI54276.1 (hypothetical protein F443_02901 [Phytophthora parasitica P1569] >ETL80558.1 hypothetical protein L917_18958 [Phytophthora parasitica] >ETM33757.1 hypothetical protein L914_19037 [Phytophthora parasitica])

HSP 1 Score: 265.0 bits (676), Expect = 6.400e-67
Identity = 186/465 (40.00%), Postives = 253/465 (54.41%), Query Frame = 0

Query:    7 DAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESD---------VPRKREKVYIPKDN-TEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAPDGEP--QEDMHVLIEG-TDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEIKGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVGLVIGRGGENIQKLTAKTGCFVQVSKETEPGEQT--RVVSIKGPTKEGVAEALKMIQEQVDEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAATLTVPVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAPDMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLIIGRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYEIEMKLM 457
            D +ARA+ IAARL A+  P G   G ++   EG+ D           +KR+KVYIP D   + NF  LLIGPRGS QKR+++ +GARI IRG GS        P GEP   E++HVLI   TDE VA A+  VE ILF+P +AM+LK  QLR +AE+ G        +   G +S  HYGPG         A+  + +MK+P  +VG +IGRGGE I+ L  K+G  +Q+ +E E   QT  R V+I G  +E +  A ++IQ  +DE Q                                 + ++ + VP+E+VGLIIGRGG TI+AIQ RTG +V IP     + P  R ITI    M A E A+ EI  L++  PG   G G      G  + M +  ++VG+IIG+ G  IK IQ R   RIQ+P  A+ GSNPPVR ++I GP      A+ E++M ++
Sbjct:    3 DPVARAREIAARLAAAAIPGGDALGKRKSRWEGDVDGGVRPAPGMGEKKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGS-----SKDPTGEPDENEELHVLITADTDEAVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNENYD-SHAIGQNSGAHYGPGN-------DAQTSSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRYVNIAG-NQEALDLAQRLIQNLIDERQQNQSAGGFRERDDRDRMARYGGINPDG------SDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPDKRLITIRG-TMEAKEAAKFEIQSLVSEEPGQRHGYG---MASGQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADEGSNPPVRTISIQGPPQNLAGAKEEVDMVIL 443

[Close]

BLAST of NO01G03700 vs. NCBI_GenBank
Match: ETI54277.1 (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETL80559.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM33758.1 hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 265.0 bits (676), Expect = 6.400e-67
Identity = 186/465 (40.00%), Postives = 253/465 (54.41%), Query Frame = 0

Query:    7 DAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESD---------VPRKREKVYIPKDN-TEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAPDGEP--QEDMHVLIEG-TDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEIKGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVGLVIGRGGENIQKLTAKTGCFVQVSKETEPGEQT--RVVSIKGPTKEGVAEALKMIQEQVDEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAATLTVPVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAPDMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLIIGRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYEIEMKLM 457
            D +ARA+ IAARL A+  P G   G ++   EG+ D           +KR+KVYIP D   + NF  LLIGPRGS QKR+++ +GARI IRG GS        P GEP   E++HVLI   TDE VA A+  VE ILF+P +AM+LK  QLR +AE+ G        +   G +S  HYGPG         A+  + +MK+P  +VG +IGRGGE I+ L  K+G  +Q+ +E E   QT  R V+I G  +E +  A ++IQ  +DE Q                                 + ++ + VP+E+VGLIIGRGG TI+AIQ RTG +V IP     + P  R ITI    M A E A+ EI  L++  PG   G G      G  + M +  ++VG+IIG+ G  IK IQ R   RIQ+P  A+ GSNPPVR ++I GP      A+ E++M ++
Sbjct:    3 DPVARAREIAARLAAAAIPGGDALGKRKSRWEGDVDGGVRPAPGMGEKKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGS-----SKDPTGEPDENEELHVLITADTDEAVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNENYD-SHAIGQNSGAHYGPGN-------DAQTSSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRYVNIAG-NQEALDLAQRLIQNLIDERQQNQSAGGFRERDDRDRMARYGGINPDG------SDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPDKRLITIRG-TMEAKEAAKFEIQSLVSEEPGQRHGYG---MASGQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADEGSNPPVRTISIQGPPQNLAGAKEEVDMVIL 443

[Close]

BLAST of NO01G03700 vs. NCBI_GenBank
Match: ETK73873.1 (hypothetical protein L915_19238 [Phytophthora parasitica] >ETO62315.1 hypothetical protein F444_19770 [Phytophthora parasitica P1976] >ETP03388.1 hypothetical protein F441_19646 [Phytophthora parasitica CJ01A1] >ETP31568.1 hypothetical protein F442_19601 [Phytophthora parasitica P10297])

HSP 1 Score: 265.0 bits (676), Expect = 6.400e-67
Identity = 186/465 (40.00%), Postives = 253/465 (54.41%), Query Frame = 0

Query:    7 DAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESD---------VPRKREKVYIPKDN-TEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAPDGEP--QEDMHVLIEG-TDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEIKGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVGLVIGRGGENIQKLTAKTGCFVQVSKETEPGEQT--RVVSIKGPTKEGVAEALKMIQEQVDEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAATLTVPVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAPDMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLIIGRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYEIEMKLM 457
            D +ARA+ IAARL A+  P G   G ++   EG+ D           +KR+KVYIP D   + NF  LLIGPRGS QKR+++ +GARI IRG GS        P GEP   E++HVLI   TDE VA A+  VE ILF+P +AM+LK  QLR +AE+ G        +   G +S  HYGPG         A+  + +MK+P  +VG +IGRGGE I+ L  K+G  +Q+ +E E   QT  R V+I G  +E +  A ++IQ  +DE Q                                 + ++ + VP+E+VGLIIGRGG TI+AIQ RTG +V IP     + P  R ITI    M A E A+ EI  L++  PG   G G      G  + M +  ++VG+IIG+ G  IK IQ R   RIQ+P  A+ GSNPPVR ++I GP      A+ E++M ++
Sbjct:    3 DPVARAREIAARLAAAAIPGGDALGKRKSRWEGDVDGGVRPAPGMGEKKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGS-----SKDPTGEPDENEELHVLITADTDEAVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNENYD-SHAIGQNSGAHYGPGN-------DAQASSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRYVNIAG-NQEALDLAQRLIQNLIDERQQNQSAGGFRERDDRDRMARYGGINPDG------SDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPDKRLITIRG-TMEAKEAAKFEIQSLVSEEPGQRHGYG---MASGQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADEGSNPPVRTISIQGPPQNLAGAKEEVDMVIL 443

[Close]

BLAST of NO01G03700 vs. NCBI_GenBank
Match: ETK73874.1 (hypothetical protein, variant 1 [Phytophthora parasitica] >ETO62316.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP03389.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP31569.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 265.0 bits (676), Expect = 6.400e-67
Identity = 186/465 (40.00%), Postives = 253/465 (54.41%), Query Frame = 0

Query:    7 DAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESD---------VPRKREKVYIPKDN-TEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAPDGEP--QEDMHVLIEG-TDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEIKGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVGLVIGRGGENIQKLTAKTGCFVQVSKETEPGEQT--RVVSIKGPTKEGVAEALKMIQEQVDEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAATLTVPVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAPDMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLIIGRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYEIEMKLM 457
            D +ARA+ IAARL A+  P G   G ++   EG+ D           +KR+KVYIP D   + NF  LLIGPRGS QKR+++ +GARI IRG GS        P GEP   E++HVLI   TDE VA A+  VE ILF+P +AM+LK  QLR +AE+ G        +   G +S  HYGPG         A+  + +MK+P  +VG +IGRGGE I+ L  K+G  +Q+ +E E   QT  R V+I G  +E +  A ++IQ  +DE Q                                 + ++ + VP+E+VGLIIGRGG TI+AIQ RTG +V IP     + P  R ITI    M A E A+ EI  L++  PG   G G      G  + M +  ++VG+IIG+ G  IK IQ R   RIQ+P  A+ GSNPPVR ++I GP      A+ E++M ++
Sbjct:    3 DPVARAREIAARLAAAAIPGGDALGKRKSRWEGDVDGGVRPAPGMGEKKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGS-----SKDPTGEPDENEELHVLITADTDEAVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNENYD-SHAIGQNSGAHYGPGN-------DAQASSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRYVNIAG-NQEALDLAQRLIQNLIDERQQNQSAGGFRERDDRDRMARYGGINPDG------SDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPDKRLITIRG-TMEAKEAAKFEIQSLVSEEPGQRHGYG---MASGQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADEGSNPPVRTISIQGPPQNLAGAKEEVDMVIL 443

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BLAST of NO01G03700 vs. NCBI_GenBank
Match: XP_008913814.1 (hypothetical protein PPTG_17784 [Phytophthora parasitica INRA-310] >ETL27305.1 hypothetical protein L916_19132 [Phytophthora parasitica] >ETN00900.1 hypothetical protein PPTG_17784 [Phytophthora parasitica INRA-310])

HSP 1 Score: 265.0 bits (676), Expect = 6.400e-67
Identity = 186/465 (40.00%), Postives = 253/465 (54.41%), Query Frame = 0

Query:    7 DAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESD---------VPRKREKVYIPKDN-TEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAPDGEP--QEDMHVLIEG-TDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEIKGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVGLVIGRGGENIQKLTAKTGCFVQVSKETEPGEQT--RVVSIKGPTKEGVAEALKMIQEQVDEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAATLTVPVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAPDMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLIIGRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYEIEMKLM 457
            D +ARA+ IAARL A+  P G   G ++   EG+ D           +KR+KVYIP D   + NF  LLIGPRGS QKR+++ +GARI IRG GS        P GEP   E++HVLI   TDE VA A+  VE ILF+P +AM+LK  QLR +AE+ G        +   G +S  HYGPG         A+  + +MK+P  +VG +IGRGGE I+ L  K+G  +Q+ +E E   QT  R V+I G  +E +  A ++IQ  +DE Q                                 + ++ + VP+E+VGLIIGRGG TI+AIQ RTG +V IP     + P  R ITI    M A E A+ EI  L++  PG   G G      G  + M +  ++VG+IIG+ G  IK IQ R   RIQ+P  A+ GSNPPVR ++I GP      A+ E++M ++
Sbjct:    3 DPVARAREIAARLAAAAIPGGDALGKRKSRWEGDVDGGVRPAPGMGEKKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGS-----SKDPTGEPDENEELHVLITADTDEAVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNENYD-SHAIGQNSGAHYGPGN-------DAQASSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRYVNIAG-NQEALDLAQRLIQNLIDERQQNQSAGGFRERDDRDRMARYGGINPDG------SDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPDKRLITIRG-TMEAKEAAKFEIQSLVSEEPGQRHGYG---MASGQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADEGSNPPVRTISIQGPPQNLAGAKEEVDMVIL 443

The following BLAST results are available for this feature:

BLAST of NO01G03700 vs. NCBI_GenBank

BLAST of NO01G03700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005854787.1	7.600e-201	78.04	hypothetical protein NGA_0401010 [Nannochloropsis ...	[more]
EWM29308.1	8.400e-200	77.47	far upstream element binding protein 3 [Nannochlor...	[more]
XP_005854823.1	1.800e-117	85.82	hypothetical protein NGA_0401020, partial [Nannoch...	[more]
XP_009536185.1	2.000e-68	40.17	hypothetical protein PHYSODRAFT_339892 [Phytophtho...	[more]
XP_002906007.1	3.800e-67	39.79	conserved hypothetical protein [Phytophthora infes...	[more]
ETI54276.1	6.400e-67	40.00	hypothetical protein F443_02901 [Phytophthora para...	[more]
ETI54277.1	6.400e-67	40.00	hypothetical protein, variant 1 [Phytophthora para...	[more]
ETK73873.1	6.400e-67	40.00	hypothetical protein L915_19238 [Phytophthora para...	[more]
ETK73874.1	6.400e-67	40.00	hypothetical protein, variant 1 [Phytophthora para...	[more]
XP_008913814.1	6.400e-67	40.00	hypothetical protein PPTG_17784 [Phytophthora para...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL005	nonsL005	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR047	ncniR047	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR091	ngnoR091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK007931	NSK007931	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO01G03700.1	NO01G03700.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627849	gene_380	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100152g10	gene1325	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO01G03700.1	NO01G03700.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO01G03700 ID=NO01G03700|Name=NO01G03700|organism=Nannochloropsis oceanica|type=gene|length=2246bp
ACAGGGTTCTACCCGAACGGTGGTGCTACCATCATTACCACCACGTTGGA
CAAGAGCCATGAGCGGGCTGCCTGATGATGCTATTGCTCGTGCCAAGGCC
ATTGCAGCACGGCTGACGGCTAGCCTGGGGCCGGAAGGGGGCGGCGGGGG
CACCAAGCGGCGGTTTGGGGAGGGCGAGTCGGATGTGCCGCGGAAGAGGG
AGAAGGTGTACATCCCCAAGGATAATACCGAGTTTAACTTCTTCAGCTTG
TTGATTGGCCCGCGTGGGTCGACCCAGAAGCGCTTGCAAGAACACACGGG
CGCGCGCATCAACATCCGGGGCACAGGCTCAGAGGGGGGCAAGACTGAAG
ATGCGCCGGACGGGGAGCCACAAGAAGATATGCACGTGTTAATCGAGGGC
ACAGACGAGCAAGTGGCGGCAGCCAAGAAGGAAGTGGAGAAGATTTTGTT
CGACCCTGCCGAGGCCATGCGGCTCAAGGCAGCCCAATTGCGGAACCTGG
CCGAGATCAAGGGTGGTTATCAGCCTGGGGTTGGCGTGGCGGGTGGGGCG
GGAGCCGACAGCGATGGCCATTACGGACCAGGGCGGGCACGGCCTGGGTT
GGGGTTCGGTGCGGAACCGGAGACGGGGGAAATGAAAATTCCGTCGTCGA
TGGTGGGGTTGGTAATTGGCCGTGGAGGAGAAAATATTCAGAAGCTGACG
GCAAAAACGGGGTGTTTTGTCCAGGTGTCGAAGGAGACGGAGCCAGGTGA
GCAAACGCGAGTGGTTAGTATCAAAGGCCCGACGAAAGAGGGGGTGGCTG
AGGCGTTGAAAATGATACAGGAACAAGTGGATGAAGCGCAGCAAGAACGT
AGCCGACCTCGTACTGGCGCCGGAGGGGGTGGTGGTGGTGGTGGTCACTA
CGGTGGAGGAGGAGGGGCCCCTGGATCCGATTATGGCTTTGCGGCCACGT
TGACCGTGCCAGTGCCGTCGGAGAAAGTGGGGTTGATAATCGGGAGAGGT
GGGAGTACCATCCGCGCGATTCAAGACAGGACGGGCGCGAACGTCATGAT
CCCGAGCGCGCAACAGGGTGATGATCCGCACATCCGTACGATTACGATCT
CAGCGCCAGACATGGGGGCGGCGGAGTTTGCGCGCAGTGAGATCCATGGT
CTATTGGCCTCGGGACCTGGTGGCACGGGGGGAGGGGGGCCGCAGATGCA
GCAAGGGGGAACGGCACTTATCATGCATATTGACCAGGAGAAGGTGGGGT
TGATCATTGGAAGATCGGGGGCCGTGATCAAGGAGATCCAACACCGGACG
GGGACGAGGATTCAGGTCCCCACCACTGCTGAGCCGGGGAGCAACCCTCC
AGTTCGTGCTGTCACCATCATGGGTCCTGGTGATGGCCCTGAGCGAGCAC
GGTACGAAATTGAGATGAAGCTCATGAACGAAGGCTGTCGAGACGCGCAA
GGCAATTACATCCCTTACCAACCAAGTCCCGCCTTCATGGTGCCTGTCGG
TCCAAATGGTGTTCCAGGCGCTACTCCTCCCCCTCCTCCTCCTCAGGCCT
CCCCATACTTCCAAGCCCCCCCCGGCTATCCGCCCCAGCAGCCTCCTCCC
GGCTATCCGCCTACTGTTTATCCTCCCCAACCCCAACAACACCAGCCAGA
CCCCTATGCTGCGTACTACCAGCAGCACCAGCAGCAGCAGCAGCAGCAGC
AGCAGCACCAGCAGCACCAGCAGCCTCCTCCTCCTCAGCATCAGCAACAC
ACCGCATACCCTCCCCAGCCCAATGGTGGTACTGGTGCCCTCCCCCCTCC
TCAGCAACAACAGCCGGCCGCGGCCCCTGCTCCTGCGCCCGCTCCCGCAA
CCAATGGTGCCGCTGGTACATCTTCGGCCGGTGGCACGGCTTCTAACGCT
GGTGGCGCTGCTGCTAGTGGAGCCTCGTACGATCCTACACAATACTGGGA
TCAATATTGGGCGTATGCGCAGCATTATGGCGAGGAGTATGCACGCAAGC
AGTATGACACGTGGGCACCGCCGGATGGGACACCTCCTCCCCCCGGGATC
ACCTTGCCGAGCCCCGCGGAGGCTGCCGCTGCAATTGCGGCGTTATCTAA
GACTGCATAGTGAGAATGGAGGGTGGATAACGAGGGCGGGAGGGAGAAAT
AATGAAAGAAGTTGTGGAACACATCAAGGTTTTGAAAACGTGGGTTGGTA
GCGGAAGGAATTCTCCCAAAAGAAGCGGTGATCGTTTGATTCCTGG

protein sequence of NO01G03700.1

>NO01G03700.1-protein ID=NO01G03700.1-protein|Name=NO01G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=684bp
MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESDVPRKREKV
YIPKDNTEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAP
DGEPQEDMHVLIEGTDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEI
KGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVG
LVIGRGGENIQKLTAKTGCFVQVSKETEPGEQTRVVSIKGPTKEGVAEAL
KMIQEQVDEAQQERSRPRTGAGGGGGGGGHYGGGGGAPGSDYGFAATLTV
PVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAP
DMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLII
GRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYE
IEMKLMNEGCRDAQGNYIPYQPSPAFMVPVGPNGVPGATPPPPPPQASPY
FQAPPGYPPQQPPPGYPPTVYPPQPQQHQPDPYAAYYQQHQQQQQQQQQH
QQHQQPPPPQHQQHTAYPPQPNGGTGALPPPQQQQPAAAPAPAPAPATNG
AAGTSSAGGTASNAGGAAASGASYDPTQYWDQYWAYAQHYGEEYARKQYD
TWAPPDGTPPPPGITLPSPAEAAAAIAALSKTA*

Synonyms

Publications