NO01G03640, NO01G03640 (gene) Nannochloropsis oceanica

Overview
NameNO01G03640
Unique NameNO01G03640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr1:966984..968066 +

Link to JBrowse

Properties
Property NameValue
DescriptionE3 ubiquitin-protein ligase mdm2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:966984..968066 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO:0000122negative regulation of transcription by RNA polymerase II
GO:0016567protein ubiquitination
GO:0000122negative regulation of transcription by RNA polymerase II
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR015459MDM2_E3_ligase
Vocabulary: Molecular Function
TermDefinition
GO:0016874ligase activity
Homology
[Close]
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_022779278.1 (protein Mdm4-like isoform X2 [Stylophora pistillata])

HSP 1 Score: 82.0 bits (201), Expect = 4.100e-12
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:  303 EDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHF 359
            ++  C++C    +N+T +HG++GH  CC  CA+VLK RGDPCP+CR PID VI+ F
Sbjct:  326 DNSKCIICMDQPKNATVIHGDTGHCCCCWACAQVLKQRGDPCPICRAPIDHVIRQF 381
[Close]
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_022779277.1 (uncharacterized protein LOC111320837 isoform X1 [Stylophora pistillata])

HSP 1 Score: 82.0 bits (201), Expect = 4.100e-12
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:  303 EDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHF 359
            ++  C++C    +N+T +HG++GH  CC  CA+VLK RGDPCP+CR PID VI+ F
Sbjct:  349 DNSKCIICMDQPKNATVIHGDTGHCCCCWACAQVLKQRGDPCPICRAPIDHVIRQF 404
[Close]
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_002158168.2 (PREDICTED: protein Mdm4-like isoform X1 [Hydra vulgaris] >XP_012556378.1 PREDICTED: protein Mdm4-like isoform X2 [Hydra vulgaris])

HSP 1 Score: 81.3 bits (199), Expect = 7.000e-12
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 0 
Query:  303 EDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHF 359
            +   C+VC+   +N+T VHG +GH+ CCL CA  L+ RGD CP+CR PID VI+H+
Sbjct:  290 DSQKCIVCYGRPKNATIVHGSTGHVCCCLSCAYKLERRGDSCPICRAPIDRVIKHY 345
[Close]
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_015772271.1 (PREDICTED: uncharacterized protein LOC107350549 [Acropora digitifera])

HSP 1 Score: 80.5 bits (197), Expect = 1.200e-11
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 0 
Query:  300 QSKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHF 359
            +S +++ C++C    +N+T +HGE+GH   C  CA+VLK RGDPCP+CR PI+ VI+ F
Sbjct:  310 ESTDNNKCIICMEEPKNATIIHGETGHCCSCWACAQVLKQRGDPCPICRAPIEHVIRQF 368
[Close]
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_020623080.1 (uncharacterized protein LOC110060635 isoform X4 [Orbicella faveolata])

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-10
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 0 
Query:  307 CLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHF 359
            C++C  + +N+T +HG++GH  CC  CA+VLK RGDPCP+CR  I+ VI+ F
Sbjct:  318 CIICMENPKNATLIHGDTGHCCCCWPCAQVLKQRGDPCPICRAHIEHVIRQF 369
[Close]
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_020623079.1 (uncharacterized protein LOC110060635 isoform X3 [Orbicella faveolata])

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-10
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 0 
Query:  307 CLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHF 359
            C++C  + +N+T +HG++GH  CC  CA+VLK RGDPCP+CR  I+ VI+ F
Sbjct:  319 CIICMENPKNATLIHGDTGHCCCCWPCAQVLKQRGDPCPICRAHIEHVIRQF 370
[Close]
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_020623077.1 (uncharacterized protein LOC110060635 isoform X1 [Orbicella faveolata])

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-10
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 0 
Query:  307 CLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHF 359
            C++C  + +N+T +HG++GH  CC  CA+VLK RGDPCP+CR  I+ VI+ F
Sbjct:  320 CIICMENPKNATLIHGDTGHCCCCWPCAQVLKQRGDPCPICRAHIEHVIRQF 371
[Close]
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_020623078.1 (uncharacterized protein LOC110060635 isoform X2 [Orbicella faveolata])

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-10
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 0 
Query:  307 CLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHF 359
            C++C  + +N+T +HG++GH  CC  CA+VLK RGDPCP+CR  I+ VI+ F
Sbjct:  319 CIICMENPKNATLIHGDTGHCCCCWPCAQVLKQRGDPCPICRAHIEHVIRQF 370
[Close]
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_020905951.1 (protein Mdm4-like [Exaiptasia pallida] >XP_020905952.1 protein Mdm4-like [Exaiptasia pallida] >KXJ25648.1 E3 ubiquitin-protein ligase Mdm2 [Exaiptasia pallida])

HSP 1 Score: 77.0 bits (188), Expect = 1.300e-10
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 0 
Query:  300 QSKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHF 359
            ++ +   C++C  + +N+T +HG++GH+ CC  CA+VLK RGD CP+CR  ID VI+ F
Sbjct:  311 EADDGDECIICLENPKNATLIHGDTGHLCCCWSCAQVLKKRGDKCPICRQRIDHVIKQF 369
[Close]
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_001634286.1 (predicted protein [Nematostella vectensis] >EDO42223.1 predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 76.3 bits (186), Expect = 2.200e-10
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 0 
Query:  307 CLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHFWA 361
            C++C  + +N+T +HG++GH+ CC  CA+VLK R DPCP+CR  ID VI+ + A
Sbjct:    1 CIICLENPKNATLIHGDTGHLCCCWSCAQVLKRRCDPCPICRSRIDHVIRQYAA 54
The following BLAST results are available for this feature:
BLAST of NO01G03640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_022779278.14.100e-1251.79protein Mdm4-like isoform X2 [Stylophora pistillat... [more]
XP_022779277.14.100e-1251.79uncharacterized protein LOC111320837 isoform X1 [S... [more]
XP_002158168.27.000e-1251.79PREDICTED: protein Mdm4-like isoform X1 [Hydra vul... [more]
XP_015772271.11.200e-1149.15PREDICTED: uncharacterized protein LOC107350549 [A... [more]
XP_020623080.11.000e-1051.92uncharacterized protein LOC110060635 isoform X4 [O... [more]
XP_020623079.11.000e-1051.92uncharacterized protein LOC110060635 isoform X3 [O... [more]
XP_020623077.11.000e-1051.92uncharacterized protein LOC110060635 isoform X1 [O... [more]
XP_020623078.11.000e-1051.92uncharacterized protein LOC110060635 isoform X2 [O... [more]
XP_020905951.11.300e-1045.76protein Mdm4-like [Exaiptasia pallida] >XP_0209059... [more]
XP_001634286.12.200e-1050.00predicted protein [Nematostella vectensis] >EDO422... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007940NSK007940Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03640.1NO01G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577131gene_368Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100029g46gene1333Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03640.1NO01G03640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03640 ID=NO01G03640|Name=NO01G03640|organism=Nannochloropsis oceanica|type=gene|length=1083bp
ATGCAACCTCCTCCCACCACCCCCCAGTCCACCGCCGCGGTTGCCCTCGC
CCAAGCCGCCTTCCATTATCGTGTCGTCTGTGAAGATGGTGCCTATGTCC
GCGCCGGGCTCGAGCTGAGCTCCCGACACCTCTACACCATCGCAAGCCAA
AGCACCGTTGAAGTCCTGGAACGCTGTGTCAACATCCAAGGCCTGGCCCG
TCTGCGTACTGCCGACGGCTGGATCTCTGAGATGCTTAATCCTCTATCGG
GGCAGCGGGGACCGATCGTTGAAGTAGTCCCTCTGCAGCACCCTCTTAAA
TTCCGTATTCTGTTCCCTGGAGGCGCCCTGGTGCGAAGCGGCATTGAAAT
TAGCACCAGTGTTGTGGGCACCATCCCCGTGGGGCAAGAGATCATCGTGA
CAGACAAACGCTATTCAGATACACCATCTCACCGATGTGTGCCTCGCTTG
AAGCTGGCGGATGGTTCGGGATGGATTAGCGCGCGGATTAATGCTCCCCC
ACCAAATGAGACGGTCGTCGAACTTGTGGGCTTGGCTAGCCAGGAGGAGG
CGAGGGCATACAGCGCGGCGATCATCTGGCCGACAGCAGCGACACCGGCG
CACGGGGCAGGGATGTTAGAGGGAGAATCTATGGCCGAGGAGCAATATGG
GGAAAGGCATGCGGTGGATGGCGGCGAGAGGAGAAGATCCCTCGCCGCTT
CTTCGGCGTCCTTGGTGGTGTTGCCTGTGAACAAGCAAAACCGCCCCCGT
CGTCATCATCAACACAACCAGCAGGATCACTATTACCACGTCATTGACGC
CTCGGATAAGATTCGATGCTCCTTACAGCCCTACGATGACGACTTTAGTG
CTACATCAGGCGCGGGCGACAATCACCCGCAGCAAGAGCGGAGGCGTCAA
TCGAAGGAGGACCATTCTTGTCTCGTTTGCTTTAGCTCTTATCGGAATTC
TACATTTGTGCATGGAGAATCTGGACATATCGCTTGCTGTTTGGAATGTG
CACGCGTCCTGAAGGGTCGTGGGGATCCTTGCCCAGTTTGCCGGCTGCCG
ATAGATTCTGTCATCCAGCACTTTTGGGCATAG
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protein sequence of NO01G03640.1

>NO01G03640.1-protein ID=NO01G03640.1-protein|Name=NO01G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MQPPPTTPQSTAAVALAQAAFHYRVVCEDGAYVRAGLELSSRHLYTIASQ
STVEVLERCVNIQGLARLRTADGWISEMLNPLSGQRGPIVEVVPLQHPLK
FRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRL
KLADGSGWISARINAPPPNETVVELVGLASQEEARAYSAAIIWPTAATPA
HGAGMLEGESMAEEQYGERHAVDGGERRRSLAASSASLVVLPVNKQNRPR
RHHQHNQQDHYYHVIDASDKIRCSLQPYDDDFSATSGAGDNHPQQERRRQ
SKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLP
IDSVIQHFWA*
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Synonyms
Publications