NO01G03640.1, NO01G03640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03640.1
Unique NameNO01G03640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr1:966984..968066 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:966984..968066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03640.1 vs.
Match: EWM29295.1 (e3 ubiquitin-protein ligase mdm2 [Nannochloropsis gaditana])

HSP 1 Score: 471.9 bits (1213), Expect = 1.800e-129
Identity = 245/365 (67.12%), Postives = 273/365 (74.79%), Query Frame = 0
Query:    1 MQPPPTTPQSTAAVALAQAAFHYRVVCEDGAYVRAGLELSSRHLYTIASQSTVEVLERCVNIQGLARLRTADGWISEMLNPLSGQRGPIVEVVPLQHPLKFRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRLKLADGSGWISARINAPPPNET-VVELVGLASQEEARAYSAAIIWPTAATPAHGAGMLEGES----MAEEQYGERHAVDGGERRRSLAASSASLVVLPVNKQNRPRRHHQHNQQDHYYHVIDASDKIRCSLQPYDDDFSATSGAGDNHPQQERRRQSKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHFWA 361
            M PPP+TP+STA VA  QAAFHYRVVCEDGAYVRAGLELSSRHLYTI SQST+EVLERCVN QGLARLRT DGWISEMLNPLSGQRGPIVE+VPLQHPLKFRI FP GALVRSGIE+S+ VVGTIP GQEI+VT+KR+SDTPS+RCVPRLKLADG GWIS RIN+PPP++  VVEL+GLA   E   YS            HGAGML+GE        +  G    V  GERR SL+   +     PV K    R   Q +QQ     + D S+KIR +LQP        SG   +   Q  RR++KEDHSCLVCFS+ RN+TFVHGESGHIACCLECARVLKGRGDPCPVCRLP+DSVIQHFWA
Sbjct:    1 MLPPPSTPRSTAVVAFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTMF---DGLVSVHGAGMLDGEGDESIHGYQDGGSPLDVTSGERRGSLSMDLSVSEPQPVGKNRHTRYEQQRHQQG---QIADMSEKIRYALQPASAGIDEQSGTATSKGDQYERRRTKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359          
The following BLAST results are available for this feature:
BLAST of NO01G03640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29295.11.800e-12967.12e3 ubiquitin-protein ligase mdm2 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03640NO01G03640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03640.1NO01G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03640.1.cds1NO01G03640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03640.1 ID=NO01G03640.1|Name=NO01G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
ATGCAACCTCCTCCCACCACCCCCCAGTCCACCGCCGCGGTTGCCCTCGC
CCAAGCCGCCTTCCATTATCGTGTCGTCTGTGAAGATGGTGCCTATGTCC
GCGCCGGGCTCGAGCTGAGCTCCCGACACCTCTACACCATCGCAAGCCAA
AGCACCGTTGAAGTCCTGGAACGCTGTGTCAACATCCAAGGCCTGGCCCG
TCTGCGTACTGCCGACGGCTGGATCTCTGAGATGCTTAATCCTCTATCGG
GGCAGCGGGGACCGATCGTTGAAGTAGTCCCTCTGCAGCACCCTCTTAAA
TTCCGTATTCTGTTCCCTGGAGGCGCCCTGGTGCGAAGCGGCATTGAAAT
TAGCACCAGTGTTGTGGGCACCATCCCCGTGGGGCAAGAGATCATCGTGA
CAGACAAACGCTATTCAGATACACCATCTCACCGATGTGTGCCTCGCTTG
AAGCTGGCGGATGGTTCGGGATGGATTAGCGCGCGGATTAATGCTCCCCC
ACCAAATGAGACGGTCGTCGAACTTGTGGGCTTGGCTAGCCAGGAGGAGG
CGAGGGCATACAGCGCGGCGATCATCTGGCCGACAGCAGCGACACCGGCG
CACGGGGCAGGGATGTTAGAGGGAGAATCTATGGCCGAGGAGCAATATGG
GGAAAGGCATGCGGTGGATGGCGGCGAGAGGAGAAGATCCCTCGCCGCTT
CTTCGGCGTCCTTGGTGGTGTTGCCTGTGAACAAGCAAAACCGCCCCCGT
CGTCATCATCAACACAACCAGCAGGATCACTATTACCACGTCATTGACGC
CTCGGATAAGATTCGATGCTCCTTACAGCCCTACGATGACGACTTTAGTG
CTACATCAGGCGCGGGCGACAATCACCCGCAGCAAGAGCGGAGGCGTCAA
TCGAAGGAGGACCATTCTTGTCTCGTTTGCTTTAGCTCTTATCGGAATTC
TACATTTGTGCATGGAGAATCTGGACATATCGCTTGCTGTTTGGAATGTG
CACGCGTCCTGAAGGGTCGTGGGGATCCTTGCCCAGTTTGCCGGCTGCCG
ATAGATTCTGTCATCCAGCACTTTTGGGCATAG
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protein sequence of NO01G03640.1

>NO01G03640.1-protein ID=NO01G03640.1-protein|Name=NO01G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MQPPPTTPQSTAAVALAQAAFHYRVVCEDGAYVRAGLELSSRHLYTIASQ
STVEVLERCVNIQGLARLRTADGWISEMLNPLSGQRGPIVEVVPLQHPLK
FRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRL
KLADGSGWISARINAPPPNETVVELVGLASQEEARAYSAAIIWPTAATPA
HGAGMLEGESMAEEQYGERHAVDGGERRRSLAASSASLVVLPVNKQNRPR
RHHQHNQQDHYYHVIDASDKIRCSLQPYDDDFSATSGAGDNHPQQERRRQ
SKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLP
IDSVIQHFWA*
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mRNA from alignment at chr1:966984..968066+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03640.1 ID=NO01G03640.1|Name=NO01G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp|location=Sequence derived from alignment at chr1:966984..968066+ (Nannochloropsis oceanica)
ATGCAACCTCCTCCCACCACCCCCCAGTCCACCGCCGCGGTTGCCCTCGC CCAAGCCGCCTTCCATTATCGTGTCGTCTGTGAAGATGGTGCCTATGTCC GCGCCGGGCTCGAGCTGAGCTCCCGACACCTCTACACCATCGCAAGCCAA AGCACCGTTGAAGTCCTGGAACGCTGTGTCAACATCCAAGGCCTGGCCCG TCTGCGTACTGCCGACGGCTGGATCTCTGAGATGCTTAATCCTCTATCGG GGCAGCGGGGACCGATCGTTGAAGTAGTCCCTCTGCAGCACCCTCTTAAA TTCCGTATTCTGTTCCCTGGAGGCGCCCTGGTGCGAAGCGGCATTGAAAT TAGCACCAGTGTTGTGGGCACCATCCCCGTGGGGCAAGAGATCATCGTGA CAGACAAACGCTATTCAGATACACCATCTCACCGATGTGTGCCTCGCTTG AAGCTGGCGGATGGTTCGGGATGGATTAGCGCGCGGATTAATGCTCCCCC ACCAAATGAGACGGTCGTCGAACTTGTGGGCTTGGCTAGCCAGGAGGAGG CGAGGGCATACAGCGCGGCGATCATCTGGCCGACAGCAGCGACACCGGCG CACGGGGCAGGGATGTTAGAGGGAGAATCTATGGCCGAGGAGCAATATGG GGAAAGGCATGCGGTGGATGGCGGCGAGAGGAGAAGATCCCTCGCCGCTT CTTCGGCGTCCTTGGTGGTGTTGCCTGTGAACAAGCAAAACCGCCCCCGT CGTCATCATCAACACAACCAGCAGGATCACTATTACCACGTCATTGACGC CTCGGATAAGATTCGATGCTCCTTACAGCCCTACGATGACGACTTTAGTG CTACATCAGGCGCGGGCGACAATCACCCGCAGCAAGAGCGGAGGCGTCAA TCGAAGGAGGACCATTCTTGTCTCGTTTGCTTTAGCTCTTATCGGAATTC TACATTTGTGCATGGAGAATCTGGACATATCGCTTGCTGTTTGGAATGTG CACGCGTCCTGAAGGGTCGTGGGGATCCTTGCCCAGTTTGCCGGCTGCCG ATAGATTCTGTCATCCAGCACTTTTGGGCATAG
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Coding sequence (CDS) from alignment at chr1:966984..968066+

>NO01G03640.1 ID=NO01G03640.1|Name=NO01G03640.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr1:966984..968066+ (Nannochloropsis oceanica)
ATGCAACCTCCTCCCACCACCCCCCAGTCCACCGCCGCGGTTGCCCTCGC
CCAAGCCGCCTTCCATTATCGTGTCGTCTGTGAAGATGGTGCCTATGTCC
GCGCCGGGCTCGAGCTGAGCTCCCGACACCTCTACACCATCGCAAGCCAA
AGCACCGTTGAAGTCCTGGAACGCTGTGTCAACATCCAAGGCCTGGCCCG
TCTGCGTACTGCCGACGGCTGGATCTCTGAGATGCTTAATCCTCTATCGG
GGCAGCGGGGACCGATCGTTGAAGTAGTCCCTCTGCAGCACCCTCTTAAA
TTCCGTATTCTGTTCCCTGGAGGCGCCCTGGTGCGAAGCGGCATTGAAAT
TAGCACCAGTGTTGTGGGCACCATCCCCGTGGGGCAAGAGATCATCGTGA
CAGACAAACGCTATTCAGATACACCATCTCACCGATGTGTGCCTCGCTTG
AAGCTGGCGGATGGTTCGGGATGGATTAGCGCGCGGATTAATGCTCCCCC
ACCAAATGAGACGGTCGTCGAACTTGTGGGCTTGGCTAGCCAGGAGGAGG
CGAGGGCATACAGCGCGGCGATCATCTGGCCGACAGCAGCGACACCGGCG
CACGGGGCAGGGATGTTAGAGGGAGAATCTATGGCCGAGGAGCAATATGG
GGAAAGGCATGCGGTGGATGGCGGCGAGAGGAGAAGATCCCTCGCCGCTT
CTTCGGCGTCCTTGGTGGTGTTGCCTGTGAACAAGCAAAACCGCCCCCGT
CGTCATCATCAACACAACCAGCAGGATCACTATTACCACGTCATTGACGC
CTCGGATAAGATTCGATGCTCCTTACAGCCCTACGATGACGACTTTAGTG
CTACATCAGGCGCGGGCGACAATCACCCGCAGCAAGAGCGGAGGCGTCAA
TCGAAGGAGGACCATTCTTGTCTCGTTTGCTTTAGCTCTTATCGGAATTC
TACATTTGTGCATGGAGAATCTGGACATATCGCTTGCTGTTTGGAATGTG
CACGCGTCCTGAAGGGTCGTGGGGATCCTTGCCCAGTTTGCCGGCTGCCG
ATAGATTCTGTCATCCAGCACTTTTGGGCATAG
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Synonyms
Publications