NO01G03600, NO01G03600 (gene) Nannochloropsis oceanica

Overview
NameNO01G03600
Unique NameNO01G03600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2290
Alignment locationchr1:953688..955977 +

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Properties
Property NameValue
DescriptionMitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:953688..955977 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO01G03600 vs. NCBI_GenBank
Match: EWM29279.1 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 324.7 bits (831), Expect = 3.000e-85
Identity = 158/163 (96.93%), Postives = 160/163 (98.16%), Query Frame = 0
Query:   55 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPAMPDPTLPPTGPGMLSGF 218
            MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAA+RKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAP ASTPEMG PA+PDPTLPPTGPGMLS F
Sbjct:    1 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPTLPPTGPGMLSSF 163          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: XP_009034781.1 (hypothetical protein AURANDRAFT_7941, partial [Aureococcus anophagefferens] >EGB10066.1 hypothetical protein AURANDRAFT_7941, partial [Aureococcus anophagefferens])

HSP 1 Score: 194.5 bits (493), Expect = 4.700e-46
Identity = 89/131 (67.94%), Postives = 106/131 (80.92%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFA 189
            REPCPYRI+DD+GGA+ MG++GG IWH+ KG RNAPK +   G I  VK RAP+VGG FAVWG  FA FDCS+ AVR KEDPWN+IL+GA TGG+LA RAGPKAAGKNA++GG++LA+IEG  I ITK  A
Sbjct:    1 REPCPYRILDDIGGAYAMGAVGGSIWHFVKGWRNAPKNQGFSGAIEQVKVRAPVVGGNFAVWGGLFACFDCSLVAVRHKEDPWNSILAGAATGGVLAARAGPKAAGKNALVGGVLLALIEGLGILITKMMA 131          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: OEU16142.1 (Tim17-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 194.5 bits (493), Expect = 4.700e-46
Identity = 89/137 (64.96%), Postives = 110/137 (80.29%), Query Frame = 0
Query:   55 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPA 192
            M  REPCP+R+VDDVGGAFCMG+IGGG+WH  KG R AP G R  G +S+V ARAP++GG FAVWG  FA FDCS+ A+R+KEDPWN+I+SGA TGG+LA+RAGP+AA   A+IGG++LA+IEG  I  TK  APP+
Sbjct:    7 MADREPCPWRVVDDVGGAFCMGNIGGGMWHSIKGARMAPAGARFAGSLSAVSARAPVLGGQFAVWGGLFACFDCSLTALRQKEDPWNSIVSGAATGGVLAVRAGPQAAASAALIGGVLLALIEGMGIMFTKMTAPPS 143          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: GAX25638.1 (hypothetical protein FisN_15Lu013 [Fistulifera solaris])

HSP 1 Score: 191.0 bits (484), Expect = 5.200e-45
Identity = 95/158 (60.13%), Postives = 118/158 (74.68%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPAM-PDPTLPPTGPGML 215
            REPCPYRI+DD+GGAFCMG IGGGIWH  KG R AP G R+ G +S+V AR+P++GG FAVWG  FA  DC++ AVR+KEDPWN+I+SGA TGG+LA RAGP+AA   AV+GG++LA+IEG  I I++  AP   T E    AM  D T PPT  G++
Sbjct:    9 REPCPYRIIDDIGGAFCMGCIGGGIWHSVKGARLAPAGARMAGSMSAVIARSPVLGGQFAVWGGLFACCDCTLTAVRQKEDPWNSIISGAATGGILAARAGPRAAASAAVVGGVLLALIEGMGIMISRALAPAPPTAEDYERAMQQDVTAPPTMGGLM 166          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: OQR95370.1 (mitochondrial protein translocase, MPT family [Thraustotheca clavata])

HSP 1 Score: 185.3 bits (469), Expect = 2.900e-43
Identity = 83/133 (62.41%), Postives = 106/133 (79.70%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPP 191
            REPCPYRI++D+GGAF MG++GGGI+H  KG RN+P GER RG + +VKAR+PL+ G FA+WG  F+SFDCS+AA+R+KEDPWN+I +GA TGG LAIR+GP+ A   AVIGG +LA+IEG  I + K   PP
Sbjct:    3 REPCPYRIIEDMGGAFGMGAVGGGIFHSIKGARNSPPGERFRGALYAVKARSPLLAGQFAIWGCLFSSFDCSLAAIRQKEDPWNSICAGALTGGALAIRSGPRVAATQAVIGGALLALIEGLGIMLGKMLTPP 135          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: XP_005707451.1 (mitochondrial protein translocase, MPT family [Galdieria sulphuraria] >EME30931.1 mitochondrial protein translocase, MPT family [Galdieria sulphuraria])

HSP 1 Score: 184.9 bits (468), Expect = 3.700e-43
Identity = 82/138 (59.42%), Postives = 110/138 (79.71%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPE 196
            REPCP+RI+DD+GGA+ MGSIGG +WH+FKG RN+PKG RLRG + +VK R+P++GG FAVWG  F++FDC++A +R KEDPWNAI+SGA TGG+LA R+G   A ++A IGG++LA+IEG  I +T+  A    +PE
Sbjct:    8 REPCPHRILDDIGGAYAMGSIGGALWHFFKGARNSPKGARLRGAVDAVKLRSPVLGGNFAVWGGLFSTFDCALAGIRHKEDPWNAIMSGAITGGVLAARSGVGGATRSAAIGGILLALIEGMGILLTRMTADLGPSPE 145          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: XP_005711142.1 (unnamed protein product [Chondrus crispus] >CDF40848.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 184.9 bits (468), Expect = 3.700e-43
Identity = 83/129 (64.34%), Postives = 107/129 (82.95%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKF 187
            REPCP+RI+DDVGGAF MG+IGG IWH+ KG RN+P+G R  G I +VK RAP +GG+FAVWG  F++FDCS+  +R KEDPWN+I SGA TGG+LA R+G +AAGK+A +GG++LA+IEG SIAIT++
Sbjct:   14 REPCPHRIIDDVGGAFGMGAIGGSIWHFLKGARNSPQGARFIGAIDAVKVRAPALGGSFAVWGGLFSTFDCSLQGIRGKEDPWNSIASGALTGGVLASRSGMRAAGKSAAVGGVLLALIEGISIAITRY 142          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: XP_008608320.1 (hypothetical protein SDRG_04423 [Saprolegnia diclina VS20] >EQC37993.1 hypothetical protein SDRG_04423 [Saprolegnia diclina VS20])

HSP 1 Score: 184.9 bits (468), Expect = 3.700e-43
Identity = 83/133 (62.41%), Postives = 106/133 (79.70%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPP 191
            REPCPYRI++D+GGAF MG++GGGI+H  KG RN+P GER RG + +VKAR+PL+ G FA+WG  F+SFDCS+AA+R+KEDPWN+I +GA TGG LAIR+GP+ A   AVIGG +LA+IEG  I + K   PP
Sbjct:    3 REPCPYRIIEDMGGAFGMGAVGGGIFHSIKGARNSPPGERFRGAVYAVKARSPLLAGQFAIWGCLFSSFDCSLAAIRQKEDPWNSICAGALTGGALAIRSGPRVAFTQAVIGGALLALIEGLGIMVGKMLTPP 135          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: XP_012207404.1 (hypothetical protein SPRG_12347 [Saprolegnia parasitica CBS 223.65] >KDO21846.1 hypothetical protein SPRG_12347 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 184.5 bits (467), Expect = 4.900e-43
Identity = 83/133 (62.41%), Postives = 106/133 (79.70%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPP 191
            REPCPYRI++D+GGAF MG++GGGI+H  KG RN+P GER RG + +VKAR+PL+ G FA+WG  F+SFDCS+AA+R+KEDPWN+I +GA TGG LAIR+GP+ A   AVIGG +LA+IEG  I + K   PP
Sbjct:    3 REPCPYRIIEDMGGAFGMGAVGGGIFHSVKGARNSPPGERFRGAVYAVKARSPLLAGQFAIWGCLFSSFDCSLAAIRQKEDPWNSICAGALTGGALAIRSGPRVAFTQAVIGGALLALIEGLGIMVGKMLTPP 135          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: OQR91351.1 (mitochondrial protein translocase, MPT family [Achlya hypogyna])

HSP 1 Score: 184.1 bits (466), Expect = 6.400e-43
Identity = 83/133 (62.41%), Postives = 106/133 (79.70%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPP 191
            REPCPYRI++D+GGAF MG++GGGI+H  KG RN+P GER RG + +VKAR+PL+ G FA+WG  F+SFDCS+AA+R+KEDPWN+I +GA TGG LAIR+GP+ A   AVIGG +LA+IEG  I + K   PP
Sbjct:    3 REPCPYRIIEDMGGAFGMGAVGGGIFHSIKGARNSPPGERFRGAVYAVKARSPLLAGQFAIWGCLFSSFDCSLAAIRQKEDPWNSISAGALTGGALAIRSGPRVAVTQAVIGGALLALIEGLGIMLGKMLTPP 135          
The following BLAST results are available for this feature:
BLAST of NO01G03600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29279.13.000e-8596.93Mitochondrial inner membrane translocase subunit T... [more]
XP_009034781.14.700e-4667.94hypothetical protein AURANDRAFT_7941, partial [Aur... [more]
OEU16142.14.700e-4664.96Tim17-domain-containing protein [Fragilariopsis cy... [more]
GAX25638.15.200e-4560.13hypothetical protein FisN_15Lu013 [Fistulifera sol... [more]
OQR95370.12.900e-4362.41mitochondrial protein translocase, MPT family [Thr... [more]
XP_005707451.13.700e-4359.42mitochondrial protein translocase, MPT family [Gal... [more]
XP_005711142.13.700e-4364.34unnamed protein product [Chondrus crispus] >CDF408... [more]
XP_008608320.13.700e-4362.41hypothetical protein SDRG_04423 [Saprolegnia dicli... [more]
XP_012207404.14.900e-4362.41hypothetical protein SPRG_12347 [Saprolegnia paras... [more]
OQR91351.16.400e-4362.41mitochondrial protein translocase, MPT family [Ach... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007945NSK007945Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03600.1NO01G03600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577120gene_364Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100029g41gene1336Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03600.1NO01G03600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03600 ID=NO01G03600|Name=NO01G03600|organism=Nannochloropsis oceanica|type=gene|length=2290bp
GTGAGGTGTGGAGTGGGATGATGAGCATTTGACGACGGTGATGCGAGGGA
GGTGGCTAGCAAGAAATGTTGGGGAAATGATTTCTTCAGACACGTCGCCC
AGCTGCTTTACAGGCATCAGAAGGTAGAAGAGTTGTGAGGCCAGACATGG
TTGTAGAGAAATGATGCTCTAGCTAATTGTGTCCACAATTGCCGAGCCGC
AGAGAACAAGTTCATCGCGACCGCTCGCTTCGTCGCTCTCCATGCGTGCT
TGGCAAAATTTGTGCTTGCATGGCCACGACATTCTTAACATCGCACGACA
TGCCGCAAGACAACAATGAGGGGCTCCGAGCTGCCTTGCAGTTCTTGCGG
CGGAGGCTGCTCGACTCATTAAGGCACACATGTTCTTGGCCTCCCCTAGC
CTGGATGCCACATCCGCGGATATAGAACGTCACTCATGCATCACTCAACT
CCCCTACTCCCCTCCCTCCCCCACTTCCCACAAAAGCAGGGGCAAGCCGG
GCAAGCAGCACCTCCAGCTGCTGCACCGGTAGCAACAGCAACAGGAGAAG
TTGCGTCAGCAGTCTGCTCAAGCAGCAGCGCAAGCAGCAGGAGCAGGATG
GAGGGCCGGGAACCATGCCCGTATCGCATTGTCGACGATGTGGGTGGAGC
CTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGCACTACTTCAAGGGTG
TGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGAGGCATTTCGTCTGTC
AAGGCGCGGGCGCCGCTTGTTGGGGgtaggtgttaggctggagatatgtt
tggggagggctgggacgattgtggtacagcttatagcctggttgagatgc
tttcatgctcctggtacctcttgacatggtgcttatgggtttaccggaaa
taagggggataaatggggaatgtggtcgtgaaagagagattgcgttgggt
tatgcgtgcattgtgtctacaatattcctgctccgtactgccacgacact
cattcatctttctctctcctggccttacgttcaattacgtttaacagGTG
CTTTTGCCGTATGGGGACTCTGCTTTGCCAGTTTCGATTGTAGCATAGCG
GCTGTACGAAAGAAGgttcgtttaatctgagggttgtagcgggtagtccc
tcaaccgcctttctctcatgccttggttttctcatttatattcacctttg
aataaccacagGAGGATCCTTGGAATGCAATCCTATCAGGCGCTTGCACC
GGCGGTCTTCTGGCGATAAGAGCAGGGCCCAAGGCCGCGGGCAAGAATGC
AGTGATTGGTGGTTTGGTCCTTGCCATGATCGAGGGTGCTTCGATTGCGA
TCACGAAGgtaggtgagagaggaagggagaagaagggatatagaacgttt
gacaatatggaggagaagaagagggagaaagagaaggataaaaagatgag
aggcagagttgtaggcatgggaggaagaaagcaaaaccagaccatcgagg
agaccgtgtgactgattcatttttttatccccccttccctccttccctcc
ttccctcccctcacttgacatcaatcctttttcctcgaccttcccctcca
caaacagTTTTTCGCTCCTCCGGCCTCGACTCCCGAAATGGGCGGGCCGG
CCATGCCCGACCCGACTCTTCCACCCACCGGTCCGGGTATGCTTTCGGGC
TTTGGTGGTGGCGGTGGGGGCGGGGGGTATGATGGGAGTGGTTCGTCGAC
TCCGTCTTATGCTGATGATCCTGATGCGCCCTCGACAGGCGGCGGATTTG
ACACGGGCGTGAGTGGAAGTTGGGGAGGGGATGGAGGAGGAGGAGGAGGA
GGGGGAGGGGCAGGAGGGATGGGGGGAGGGTACTCGTCAGTACCAGAGCC
GAGTGGAGGGGGAGGAGGAAGTGGATGGTTTGGAGGAATGTTCGGTGGGA
GTAAGTGATGGAGTACAGAGGAGGGACGGAGGCACAGAATAACACAATTT
TGGGTTGGAATGGTTGAGATGAAAGGAGCGAAGGAGAGGGGAGTAGAAGG
CCATTCTTGACAAAGTTGGGTGGAAATACAGAGAAGAAAATGAAAATGCT
GTGATCTATGTTGAAAATAGCAACAGAGAGCTTTGTCGTGGTTATGTGTG
CTGGATCGGTTAATAATGCGATTGTGGGTGGGGCAGTGGTCATGGCTAAT
TTAGTTGGGTGTCCACATTGCTGAGGCCCTCAGAAAGGAGTAGCAGCGAA
ATGGGAAAGAAGAAAGTAAAGCAAGTTTAAACAAGGACAG
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protein sequence of NO01G03600.1

>NO01G03600.1-protein ID=NO01G03600.1-protein|Name=NO01G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MHHSTPLLPSLPHFPQKQGQAGQAAPPAAAPVATATGEVASAVCSSSSAS
SRSRMEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRG
GISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTG
GLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPA
MPDPTLPPTGPGMLSGFGGGGGGGGYDGSGSSTPSYADDPDAPSTGGGFD
TGVSGSWGGDGGGGGGGGGAGGMGGGYSSVPEPSGGGGGSGWFGGMFGGS
K*
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Synonyms
Publications