NO01G03600.1, NO01G03600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03600.1
Unique NameNO01G03600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1673
Alignment locationchr1:953688..955977 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:953688..955977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03600.1 vs.
Match: EWM29279.1 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 356.7 bits (914), Expect = 7.200e-95
Identity = 182/198 (91.92%), Postives = 186/198 (93.94%), Query Frame = 0 
Query:   55 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPAMPDPTLPPTGPGMLSGFGGGGGGGGYDGSGSSTPSYADDPDAPSTGGGFDTG 253
            MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAA+RKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAP ASTPEMG PA+PDPTLPPTGPGMLS F GG   GG + SGS+ PSYADDP AP TGGGFDTG
Sbjct:    1 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPTLPPTGPGMLSSF-GGSSFGGVEESGSANPSYADDPSAPGTGGGFDTG 197
The following BLAST results are available for this feature:
BLAST of NO01G03600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29279.17.200e-9591.92Mitochondrial inner membrane translocase subunit T... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03600NO01G03600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03600.1NO01G03600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03600.1.cds1NO01G03600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03600.1.cds2NO01G03600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03600.1.cds3NO01G03600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03600.1.cds4NO01G03600.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03600.1 ID=NO01G03600.1|Name=NO01G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1673bp
GTGAGGTGTGGAGTGGGATGATGAGCATTTGACGACGGTGATGCGAGGGA
GGTGGCTAGCAAGAAATGTTGGGGAAATGATTTCTTCAGACACGTCGCCC
AGCTGCTTTACAGGCATCAGAAGGTAGAAGAGTTGTGAGGCCAGACATGG
TTGTAGAGAAATGATGCTCTAGCTAATTGTGTCCACAATTGCCGAGCCGC
AGAGAACAAGTTCATCGCGACCGCTCGCTTCGTCGCTCTCCATGCGTGCT
TGGCAAAATTTGTGCTTGCATGGCCACGACATTCTTAACATCGCACGACA
TGCCGCAAGACAACAATGAGGGGCTCCGAGCTGCCTTGCAGTTCTTGCGG
CGGAGGCTGCTCGACTCATTAAGGCACACATGTTCTTGGCCTCCCCTAGC
CTGGATGCCACATCCGCGGATATAGAACGTCACTCATGCATCACTCAACT
CCCCTACTCCCCTCCCTCCCCCACTTCCCACAAAAGCAGGGGCAAGCCGG
GCAAGCAGCACCTCCAGCTGCTGCACCGGTAGCAACAGCAACAGGAGAAG
TTGCGTCAGCAGTCTGCTCAAGCAGCAGCGCAAGCAGCAGGAGCAGGATG
GAGGGCCGGGAACCATGCCCGTATCGCATTGTCGACGATGTGGGTGGAGC
CTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGCACTACTTCAAGGGTG
TGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGAGGCATTTCGTCTGTC
AAGGCGCGGGCGCCGCTTGTTGGGGGTGCTTTTGCCGTATGGGGACTCTG
CTTTGCCAGTTTCGATTGTAGCATAGCGGCTGTACGAAAGAAGGAGGATC
CTTGGAATGCAATCCTATCAGGCGCTTGCACCGGCGGTCTTCTGGCGATA
AGAGCAGGGCCCAAGGCCGCGGGCAAGAATGCAGTGATTGGTGGTTTGGT
CCTTGCCATGATCGAGGGTGCTTCGATTGCGATCACGAAGTTTTTCGCTC
CTCCGGCCTCGACTCCCGAAATGGGCGGGCCGGCCATGCCCGACCCGACT
CTTCCACCCACCGGTCCGGGTATGCTTTCGGGCTTTGGTGGTGGCGGTGG
GGGCGGGGGGTATGATGGGAGTGGTTCGTCGACTCCGTCTTATGCTGATG
ATCCTGATGCGCCCTCGACAGGCGGCGGATTTGACACGGGCGTGAGTGGA
AGTTGGGGAGGGGATGGAGGAGGAGGAGGAGGAGGGGGAGGGGCAGGAGG
GATGGGGGGAGGGTACTCGTCAGTACCAGAGCCGAGTGGAGGGGGAGGAG
GAAGTGGATGGTTTGGAGGAATGTTCGGTGGGAGTAAGTGATGGAGTACA
GAGGAGGGACGGAGGCACAGAATAACACAATTTTGGGTTGGAATGGTTGA
GATGAAAGGAGCGAAGGAGAGGGGAGTAGAAGGCCATTCTTGACAAAGTT
GGGTGGAAATACAGAGAAGAAAATGAAAATGCTGTGATCTATGTTGAAAA
TAGCAACAGAGAGCTTTGTCGTGGTTATGTGTGCTGGATCGGTTAATAAT
GCGATTGTGGGTGGGGCAGTGGTCATGGCTAATTTAGTTGGGTGTCCACA
TTGCTGAGGCCCTCAGAAAGGAGTAGCAGCGAAATGGGAAAGAAGAAAGT
AAAGCAAGTTTAAACAAGGACAG
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protein sequence of NO01G03600.1

>NO01G03600.1-protein ID=NO01G03600.1-protein|Name=NO01G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MHHSTPLLPSLPHFPQKQGQAGQAAPPAAAPVATATGEVASAVCSSSSAS
SRSRMEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRG
GISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTG
GLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPA
MPDPTLPPTGPGMLSGFGGGGGGGGYDGSGSSTPSYADDPDAPSTGGGFD
TGVSGSWGGDGGGGGGGGGAGGMGGGYSSVPEPSGGGGGSGWFGGMFGGS
K*
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mRNA from alignment at chr1:953688..955977+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03600.1 ID=NO01G03600.1|Name=NO01G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp|location=Sequence derived from alignment at chr1:953688..955977+ (Nannochloropsis oceanica)
GTGAGGTGTGGAGTGGGATGATGAGCATTTGACGACGGTGATGCGAGGGA
GGTGGCTAGCAAGAAATGTTGGGGAAATGATTTCTTCAGACACGTCGCCC
AGCTGCTTTACAGGCATCAGAAGGTAGAAGAGTTGTGAGGCCAGACATGG
TTGTAGAGAAATGATGCTCTAGCTAATTGTGTCCACAATTGCCGAGCCGC
AGAGAACAAGTTCATCGCGACCGCTCGCTTCGTCGCTCTCCATGCGTGCT
TGGCAAAATTTGTGCTTGCATGGCCACGACATTCTTAACATCGCACGACA
TGCCGCAAGACAACAATGAGGGGCTCCGAGCTGCCTTGCAGTTCTTGCGG
CGGAGGCTGCTCGACTCATTAAGGCACACATGTTCTTGGCCTCCCCTAGC
CTGGATGCCACATCCGCGGATATAGAACGTCACTCATGCATCACTCAACT
CCCCTACTCCCCTCCCTCCCCCACTTCCCACAAAAGCAGGGGCAAGCCGG
GCAAGCAGCACCTCCAGCTGCTGCACCGGTAGCAACAGCAACAGGAGAAG
TTGCGTCAGCAGTCTGCTCAAGCAGCAGCGCAAGCAGCAGGAGCAGGATG
GAGGGCCGGGAACCATGCCCGTATCGCATTGTCGACGATGTGGGTGGAGC
CTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGCACTACTTCAAGGGTG
TGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGAGGCATTTCGTCTGTC
AAGGCGCGGGCGCCGCTTGTTGGGGGTAGGTGTTAGGCTGGAGATATGTT
TGGGGAGGGCTGGGACGATTGTGGTACAGCTTATAGCCTGGTTGAGATGC
TTTCATGCTCCTGGTACCTCTTGACATGGTGCTTATGGGTTTACCGGAAA
TAAGGGGGATAAATGGGGAATGTGGTCGTGAAAGAGAGATTGCGTTGGGT
TATGCGTGCATTGTGTCTACAATATTCCTGCTCCGTACTGCCACGACACT
CATTCATCTTTCTCTCTCCTGGCCTTACGTTCAATTACGTTTAACAGGTG
CTTTTGCCGTATGGGGACTCTGCTTTGCCAGTTTCGATTGTAGCATAGCG
GCTGTACGAAAGAAGGTTCGTTTAATCTGAGGGTTGTAGCGGGTAGTCCC
TCAACCGCCTTTCTCTCATGCCTTGGTTTTCTCATTTATATTCACCTTTG
AATAACCACAGGAGGATCCTTGGAATGCAATCCTATCAGGCGCTTGCACC
GGCGGTCTTCTGGCGATAAGAGCAGGGCCCAAGGCCGCGGGCAAGAATGC
AGTGATTGGTGGTTTGGTCCTTGCCATGATCGAGGGTGCTTCGATTGCGA
TCACGAAGGTAGGTGAGAGAGGAAGGGAGAAGAAGGGATATAGAACGTTT
GACAATATGGAGGAGAAGAAGAGGGAGAAAGAGAAGGATAAAAAGATGAG
AGGCAGAGTTGTAGGCATGGGAGGAAGAAAGCAAAACCAGACCATCGAGG
AGACCGTGTGACTGATTCATTTTTTTATCCCCCCTTCCCTCCTTCCCTCC
TTCCCTCCCCTCACTTGACATCAATCCTTTTTCCTCGACCTTCCCCTCCA
CAAACAGTTTTTCGCTCCTCCGGCCTCGACTCCCGAAATGGGCGGGCCGG
CCATGCCCGACCCGACTCTTCCACCCACCGGTCCGGGTATGCTTTCGGGC
TTTGGTGGTGGCGGTGGGGGCGGGGGGTATGATGGGAGTGGTTCGTCGAC
TCCGTCTTATGCTGATGATCCTGATGCGCCCTCGACAGGCGGCGGATTTG
ACACGGGCGTGAGTGGAAGTTGGGGAGGGGATGGAGGAGGAGGAGGAGGA
GGGGGAGGGGCAGGAGGGATGGGGGGAGGGTACTCGTCAGTACCAGAGCC
GAGTGGAGGGGGAGGAGGAAGTGGATGGTTTGGAGGAATGTTCGGTGGGA
GTAAGTGATGGAGTACAGAGGAGGGACGGAGGCACAGAATAACACAATTT
TGGGTTGGAATGGTTGAGATGAAAGGAGCGAAGGAGAGGGGAGTAGAAGG
CCATTCTTGACAAAGTTGGGTGGAAATACAGAGAAGAAAATGAAAATGCT
GTGATCTATGTTGAAAATAGCAACAGAGAGCTTTGTCGTGGTTATGTGTG
CTGGATCGGTTAATAATGCGATTGTGGGTGGGGCAGTGGTCATGGCTAAT
TTAGTTGGGTGTCCACATTGCTGAGGCCCTCAGAAAGGAGTAGCAGCGAA
ATGGGAAAGAAGAAAGTAAAGCAAGTTTAAACAAGGACAG
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Coding sequence (CDS) from alignment at chr1:953688..955977+

>NO01G03600.1 ID=NO01G03600.1|Name=NO01G03600.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr1:953688..955977+ (Nannochloropsis oceanica)
ATGCATCACTCAACTCCCCTACTCCCCTCCCTCCCCCACTTCCCACAAAA
GCAGGGGCAAGCCGGGCAAGCAGCACCTCCAGCTGCTGCACCGGTAGCAA
CAGCAACAGGAGAAGTTGCGTCAGCAGTCTGCTCAAGCAGCAGCGCAAGC
AGCAGGAGCAGGATGGAGGGCCGGGAACCATGCCCGTATCGCATTGTCGA
CGATGTGGGTGGAGCCTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGC
ACTACTTCAAGGGTGTGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGA
GGCATTTCGTCTGTCAAGGCGCGGGCGCCGCTTGTTGGGGGTGCTTTTGC
CGTATGGGGACTCTGCTTTGCCAGTTTCGATTGTAGCATAGCGGCTGTAC
GAAAGAAGGAGGATCCTTGGAATGCAATCCTATCAGGCGCTTGCACCGGC
GGTCTTCTGGCGATAAGAGCAGGGCCCAAGGCCGCGGGCAAGAATGCAGT
GATTGGTGGTTTGGTCCTTGCCATGATCGAGGGTGCTTCGATTGCGATCA
CGAAGTTTTTCGCTCCTCCGGCCTCGACTCCCGAAATGGGCGGGCCGGCC
ATGCCCGACCCGACTCTTCCACCCACCGGTCCGGGTATGCTTTCGGGCTT
TGGTGGTGGCGGTGGGGGCGGGGGGTATGATGGGAGTGGTTCGTCGACTC
CGTCTTATGCTGATGATCCTGATGCGCCCTCGACAGGCGGCGGATTTGAC
ACGGGCGTGAGTGGAAGTTGGGGAGGGGATGGAGGAGGAGGAGGAGGAGG
GGGAGGGGCAGGAGGGATGGGGGGAGGGTACTCGTCAGTACCAGAGCCGA
GTGGAGGGGGAGGAGGAAGTGGATGGTTTGGAGGAATGTTCGGTGGGAGT
AAGTGA
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Synonyms
Publications