NO01G03560, NO01G03560 (gene) Nannochloropsis oceanica

Overview
NameNO01G03560
Unique NameNO01G03560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2169
Alignment locationchr1:942709..944877 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna guanosine-2-o-methyltransferase trm13
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:942709..944877 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0032259methylation
GO:0030488tRNA methylation
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0106050tRNA 2'-O-methyltransferase activity
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR007871Methyltransferase_TRM13
IPR022776TRM13/UPF0224_CHHC_Znf_dom
IPR021721Znf_CCCH-type_TRM13
Homology
BLAST of NO01G03560 vs. NCBI_GenBank
Match: EWM29297.1 (trna guanosine-2 -o-methyltransferase trm13 [Nannochloropsis gaditana])

HSP 1 Score: 536.2 bits (1380), Expect = 1.300e-148
Identity = 297/564 (52.66%), Postives = 359/564 (63.65%), Query Frame = 0
Query:   48 PKPDRCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAGRATHASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAFPQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFXXXXXXXVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTK---TRKEDKVEE--KAEEGATTALADIDKANGTREKQEIKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACWVPSLTSSRG-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHND--------LSREEKIEIGWACKRLIDYGRLQFLRASGLEAECVVYCEPDVSPENSCILAWSSRAGEGEERKLRDGE 592
            PK DRC+FFLKRK+R+CTVPRLP S WCGNHQHL AG+ ++ A   RSKTQEKRGGQRR+PCPLD  HTVYEREL+AHL+VCNVK+E + LE +PFYR   NSG+  R      P      L V+E  A+ A+ R L  +K+ HPRG+ +EQ+  GPVA KILA++ + N TSE+KARH++QQASL+SHL+RRGLL  RSTCVE+GAGRGTLG AVH AFP+ARV+LVER+GV+ KADAP+RRTGEG  F RYRLDIRDLWI GLPL                   T PLVFMGKHVCGVATDLSLRA+A +++  + +K      E   E+  +  EGAT    D   +   +   + K    VG+VIATCCYHVC Y+DYVG+E WEN+L L R +FEVAQ+SACWV SLTS+RG                                                                  A  +D        LSR++KI+IG ACKRLIDYGRL +LRASGLEAEC++YCEPDVSPENSCILAW+    E E    R+ E
Sbjct:   33 PKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGY-ENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRR------PGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGP--------------GGLTSPLVFMGKHVCGVATDLSLRAVADYVRDFEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILAWTP-INEEEAENFRNVE 574          
BLAST of NO01G03560 vs. NCBI_GenBank
Match: XP_005856020.1 (coiled-coil domain containing 76, partial [Nannochloropsis gaditana CCMP526] >XP_005856065.1 coiled-coil domain containing 76, partial [Nannochloropsis gaditana CCMP526] >EKU20296.1 coiled-coil domain containing 76, partial [Nannochloropsis gaditana CCMP526] >EKU20338.1 coiled-coil domain containing 76, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 246.1 bits (627), Expect = 2.700e-61
Identity = 124/197 (62.94%), Postives = 152/197 (77.16%), Query Frame = 0
Query:  118 YERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAGRATHASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAFPQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPL 315
            YEREL+AHL+VCNVK+E + LE +PFYR   NSG+  R      P      L V+E  A+ A+ R L  +K+ HPRG+ +EQ+  GPVA KILA++ + N TSE+KARH++QQASL+SHL+RRGLL  RSTCVE+GAGRGTLG AVH AFP+ARV+LVER+GV+ KADAP+RRTGEG  F RYRLDIRDLWI GLPL
Sbjct:    1 YERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRR------PGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPL 191          
BLAST of NO01G03560 vs. NCBI_GenBank
Match: XP_012195702.1 (hypothetical protein SPRG_19285 [Saprolegnia parasitica CBS 223.65] >KDO33675.1 hypothetical protein SPRG_19285 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 189.1 bits (479), Expect = 3.900e-44
Identity = 150/542 (27.68%), Postives = 225/542 (41.51%), Query Frame = 0
Query:   52 RCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAGRA-------------------THASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAFPQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFXXXXXXXVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTKTRKEDKVEEKAEEGATTALADIDKANGTREKQEIKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACWVPSLTSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHNDLSREEKIEIGWACKRLIDYGRLQFLRASGLEAECVVYCEPDVSPENSCILA 575
            +C F L+RK RYC V R+  S++CGNH     G   + +K  +++ ++      R+PC LDP HTVY  +L  HL VCN  KE   ++  P++    NSG+   A                   +H +P +A  +++    A+  +               G +  + +K    TK+L   E+    S    RH+ QQAS++ H+ R+ LL+   T +E+GAGR  L  A+   +P +  +L++R+G + KAD   +     S   R ++DIR L + G+                   A   PLV + KH+CGVATDLSLRA+A                          T L  + +AN              G+ IA CC+H C++DDYV   T+  EL  + ADF+V    + W      + G                                                                 SRE++  +G   KR+ID GR+ +LRA G+ AE V YCE   S EN  +LA
Sbjct:   48 QCMFKLERKARYCNVARVAGSLYCGNHIERDEGVVSNKSKKFKAEMRQ------RVPCTLDPSHTVYLYDLKKHLVVCNKLKEAEAMQALPYFSRNINSGSHAAAPQDNTDVSVDEPDNETEENSHEAPSAARQASIFQILAKMDYTAFAAKVEAAYAKAVGSIPTETLKHDACTKLLVEKEATG-ASHGALRHIQQQASIIGHMERKSLLHKSFTYMELGAGRAMLSLALTQLYPASPFILIDRAGTRGKAD---QYIATESTCTRAKIDIRHLNLAGMK-----------------EATETPLVCLSKHLCGVATDLSLRALA--------------------------TTLPPV-QANAMSPHLH-------GLAIALCCHHACSWDDYVN-PTYLEELGFSAADFKVLVSLSGWATCGMGTEGDAVETVLGW--------------------------------------------------------SREKRTALGRKSKRVIDMGRVLYLRAHGMHAELVHYCEETDSLENCLLLA 471          
BLAST of NO01G03560 vs. NCBI_GenBank
Match: OQR96828.1 (tRNA guanosine-2'-O-methyltransferase [Thraustotheca clavata])

HSP 1 Score: 188.3 bits (477), Expect = 6.700e-44
Identity = 151/542 (27.86%), Postives = 228/542 (42.07%), Query Frame = 0
Query:   52 RCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAGRATHASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGD----------VIEQLIKGPVATKILASIESNNVTSEAKA--------RHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAFPQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFXXXXXXXVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTKTRKEDKVEEKAEEGATTALADIDKANGTREKQEIKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACWVPSLTSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHNDLSREEKIEIGWACKRLIDYGRLQFLRASGLEAECVVYCEPDVSPENSCILAW 576
            RC F L+RK R+C V R+P S +CGNH  L  G + +  K  +++       ++R+PC LDP HTVY  +L  HL +CN  K+   +++ P+Y +  NSG++       P  A  ++   EE       A   AS  +   + D             +LI G + TK L     + + +E +A        RH+ QQAS++ H+  + LL+   T +E+GAGR  L  A+   +P +  +L++R+G + KAD   +     S   R ++DIR L + G+                   A   PLV + KH+CGVATDLSLRA+                         ATT   + DK      K         G  IA CC+H CN+DDY+  + +  ++  T  +F++    + W     ++ G                                                                  RE++  +G  CKRLID GR+ +LR  G+ AE V YCE   S EN  +LAW
Sbjct:   29 RCMFKLERKARFCNVARVPGSQYCGNHIDLDTGVESNKTKKFKAEM------RKRVPCTLDPTHTVYLFDLKKHLVICNKLKDAEAMKQLPYYSLNINSGSSTE----KPEEAEETSGKDEENEHSQPTAARQASVFQTLSKMDYNVFAVRLEKAYNELI-GSIPTKTLNHEACSKLLTEKQATGAAHGALRHIQQQASILGHMEEKKLLHPSYTYMELGAGRAMLSLALTQLYPASPFILIDRAGTRGKAD---QYIATESKCTRAKIDIRHLNLSGMQ-----------------EAVNTPLVCLSKHLCGVATDLSLRAL-------------------------ATTLPPNEDKKMSPHLK---------GFAIALCCHHACNWDDYINPD-YFLKMGFTAVEFKLLISLSGWATCGMATEGDAVETVLGW--------------------------------------------------------GREKRTTLGRICKRLIDMGRVHYLRDRGMHAELVHYCEQSESLENCLLLAW 448          
BLAST of NO01G03560 vs. NCBI_GenBank
Match: XP_008615902.1 (hypothetical protein SDRG_11634 [Saprolegnia diclina VS20] >EQC30576.1 hypothetical protein SDRG_11634 [Saprolegnia diclina VS20])

HSP 1 Score: 188.0 bits (476), Expect = 8.800e-44
Identity = 149/542 (27.49%), Postives = 226/542 (41.70%), Query Frame = 0
Query:   52 RCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAGRA-------------------THASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAFPQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFXXXXXXXVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTKTRKEDKVEEKAEEGATTALADIDKANGTREKQEIKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACWVPSLTSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHNDLSREEKIEIGWACKRLIDYGRLQFLRASGLEAECVVYCEPDVSPENSCILA 575
            +C F L+RK RYC V R+  S++CGNH     G   + +K  +++ ++      R+PC LDP HTVY  +L  HL VCN  KE   ++  P++    NSGA                       +H +P +A  +++    A+  +               G +  + +K    TK+L   E+    S    RH+ QQAS++ H+ R+ LL+   T +E+GAGR  L  A+   +P +  +L++R+G + KAD   +     S   R ++DIR L + G+                   A   PLV + KH+CGVATDLSLRA+A                          T L  +       +   +  D++ G+ IA CC+H C++DDYV   T+  EL  + ADF+V    + W      + G                                                                 SRE++  +G   KR+ID GR+ +LRA G+ AE V YCE   S EN  +LA
Sbjct:   46 QCMFKLERKARYCNVARVAGSLYCGNHIERDEGFVSNKSKKFKAEMRQ------RVPCTLDPSHTVYLYDLKKHLVVCNKLKEAEAMQALPYFSRNINSGAHAATPQESTEPSVDEPENETEDNSHQAPSAARQASILQILAKMDYNAFAAKIEAAYAKAIGSIPTETLKHDGCTKLLLEKEATG-ASHGALRHIQQQASIIGHMERKSLLHPSFTYMELGAGRAMLSLALTQLYPASPFILIDRAGTRGKAD---QYIATESKCTRAKIDIRHLNLAGMK-----------------EATETPLVCLSKHLCGVATDLSLRALA--------------------------TTLPPV-------QANAMSPDLH-GLAIALCCHHACSWDDYVN-PTYLKELGFSAADFKVLVSLSGWATCGMGTEGDAVETVLGW--------------------------------------------------------SREKRTALGRKSKRVIDMGRVLYLRAHGMHAELVHYCEQTESLENCLLLA 469          
BLAST of NO01G03560 vs. NCBI_GenBank
Match: XP_021380827.1 (tRNA:m(4)X modification enzyme TRM13 homolog [Lonchura striata domestica] >OWK64517.1 tRNA:m(4)X modification enzyme TRM13 [Lonchura striata domestica])

HSP 1 Score: 186.8 bits (473), Expect = 2.000e-43
Identity = 151/544 (27.76%), Postives = 239/544 (43.93%), Query Frame = 0
Query:   44 PLYAPKPDRCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAGRATHASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAF---PQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFXXXXXXXVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTKTRKEDKVEEKAEEGATTALADI--DKANGTREKQEIKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACWVP---SLTSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHND-----LSREEKIEIGWACKRLIDYGRLQFLRASGLEAECVVYCEPDVSPENSCILA 575
            P   P P RC+ F+ RK R+C +   P   +CG H H                 +E++  ++R+PCPLDPKHTVYE +L  HLK CN +++ +     P Y V   +         S     +S+L++EE + L  K +  ++    H +  ++          + L    S+    E+  +H+ QQAS++ ++ +  LL      VE GAGRG L   V +A       + +LVER+  +FK D   +R    S FER ++DI+ L +  +P+               +  +  P+V +GKH+CG ATDL+LR +       +   T  + + EE A +    A  ++   K+ G     E+++ V  G+VIA CC+H C++  YVG E +++   L   +F   Q+ + W       T+S+                                                            AS +D     LS EE+ EIG  CKRLID+GR+++L+  G +A    Y EP VS EN  + A
Sbjct:    4 PGAGPGPGRCAHFVLRKRRFCRMIPAPGRRFCGEHGH-----------------EEEQNDRKRIPCPLDPKHTVYEDQLQKHLKKCNSREKPK-----PVYFVQDINAGLKDVVEISEKQVPLSSLSLEELQNLIIKLKKASNGLEVHLKEQILSH--------QALQEALSDPKNGESAFKHLKQQASILGNMEKLHLLGPGRCFVEFGAGRGKLSHWVDIALENVENVQFLLVERATTRFKVDGKHKR--RDSIFERLQVDIQHLCLNKVPI---------------LEKKKLPVVGIGKHLCGAATDLALRCL------VESYTTSCDGEDEEPAPKRCRAAQTEVAPHKSAGNESTTEVRKPV-AGIVIALCCHHKCDWTHYVGREFFKS-TGLGPVEFHYFQRMSSWATCGMQETTSK------------------------------------VSASEDGEDQTNDTEEHEHTLSRTASGSDTLQGILSVEERKEIGCLCKRLIDHGRIEYLQQQGYKAAMQYYTEPAVSLENVLLTA 456          
BLAST of NO01G03560 vs. NCBI_GenBank
Match: XP_009086749.2 (PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog isoform X1 [Serinus canaria])

HSP 1 Score: 183.0 bits (463), Expect = 2.800e-42
Identity = 149/541 (27.54%), Postives = 237/541 (43.81%), Query Frame = 0
Query:   47 APKPDRCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAGRATHASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAF---PQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFXXXXXXXVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTKTRKEDKVEEKAEEGATTALADI--DKANGTREKQEIKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACWVP---SLTSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHND-----LSREEKIEIGWACKRLIDYGRLQFLRASGLEAECVVYCEPDVSPENSCILA 575
            AP+P RC+ F+ RK R+C +   P   +CG H H                 +E++  ++R+PCPLDPKHTVYE +L  HLK CN +++ +     P Y V   +     A         +S+L++EE + L  + +   +    H +  ++          + L    S+    E+  +H+ QQAS++ ++ +  LL      VE GAGRG L   + +A       + +LVER+  +FK D   +R    S FER ++DI+ L +  +P+               +  +  P+V +GKH+CG ATDL+LR +       +   T  + K EE A +       ++   K+ G     E  + V  G+VIA CC+H C++  YVG E +++ + L   +F   Q+ + W       T+S+                                                            AS +D     LS EE+ EIG  CKRLID+GR+++L+  G +A    Y EP VS EN  + A
Sbjct:   13 APEPGRCAHFVLRKKRFCKMIPAPGRRFCGEHGH-----------------EEEQNDRKRIPCPLDPKHTVYEDQLQKHLKKCNSREKPK-----PVYFVQDINAGLKDAAEIPEKQVPLSSLSIEELQNLITRLKKATNGLELHLKEQILSH--------QALQEALSDPKNGESAFKHLKQQASILGNMEKLHLLGPGKCFVEFGAGRGKLSHWLDIALENVESVQFLLVERATTRFKVDGKHKR--RDSIFERLQVDIQHLCLNKVPI---------------LEKKKLPVVGIGKHLCGAATDLALRCL------VESYTTCCDGKDEEPAPKRCRAVQTEVAPHKSAGNESITEDHKPV-AGIVIALCCHHKCDWTHYVGREFFKS-VGLGPVEFHYFQRMSSWATCGMQETTSKA------------------------------------STSEDSGDQTNDTEEHEHTLSRTASGSDTLQGILSVEERKEIGCLCKRLIDHGRIEYLQQRGYKAALQYYTEPAVSLENVLLTA 462          
BLAST of NO01G03560 vs. NCBI_GenBank
Match: OQR90398.1 (tRNA guanosine-2'-O-methyltransferase [Achlya hypogyna])

HSP 1 Score: 182.6 bits (462), Expect = 3.700e-42
Identity = 150/552 (27.17%), Postives = 225/552 (40.76%), Query Frame = 0
Query:   52 RCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSG--AAGRATHASPPSATVS--------------------------TLTVEEARALFAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAFPQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFXXXXXXXVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTKTRKEDKVEEKAEEGATTALADIDKANGTREKQEIKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACWVPSLTSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHNDLSREEKIEIGWACKRLIDYGRLQFLRASGLEAECVVYCEPDVSPENSCILAW 576
            +C F L +K RYC V R+  S++CGNH        +D+   +    + K   ++R+PC LDP HTVY  +L  HL +CN  KE    +  P+Y    NSG  A    + A+P   T +                          TLT  +  A  A+   + +       GD+  + +      K+L   ++      A  RH+ QQAS++ H+  +GLL+  +T +E+GAGR  L  A+   +P +  +LV+RSG + KAD   +     S   R ++DIR L + G+                   A   P+V + KH+CGVATDLSLRA+A  L                    GA +                       G+ IA CC+H CN++DY+   ++  +L  T A+F+V    + W      + G                                                                 SRE++  +G  CKRLID GR+++LR+ G+EA  V YCE   S EN  +LAW
Sbjct:   29 QCMFMLVKKGRYCNVGRVAGSLYCGNH------IVEDEGVVSNKSKKFKAELRQRVPCTLDPSHTVYAFDLKKHLIICNKLKEAEATKALPYYAFNINSGNNATDSPSEAAPADETAAEGDNDNDLEDGRHNQPSAARQANVFQTLTTMDHNAFAARIEAVFA----RVVGDIPTRTLNHEACAKLLTDKQATGAAHGA-LRHIQQQASILGHMEAKGLLHPSNTYMELGAGRAMLSLALTQLYPASPFILVDRSGTRGKAD---QYIAPESKCTRAKIDIRHLNLAGMQ-----------------EAVNTPVVALSKHLCGVATDLSLRALATTL---------------PPTTPGALSPHLR-------------------GLAIALCCHHACNWEDYI-HPSFLTDLGFTPAEFKVLVSLSGWATCGMGTEGDAVETVLGW--------------------------------------------------------SREKRTALGRQCKRLIDMGRVEYLRSRGMEAHLVHYCEQAESLENCLLLAW 458          
BLAST of NO01G03560 vs. NCBI_GenBank
Match: XP_007901106.1 (PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog [Callorhinchus milii])

HSP 1 Score: 181.4 bits (459), Expect = 8.200e-42
Identity = 149/534 (27.90%), Postives = 223/534 (41.76%), Query Frame = 0
Query:   47 APKPDRCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAGRATHASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAF---PQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFXXXXXXXVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTKTRKEDKVEEKAEEGATTALADIDKANGTREKQEIKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACWV---PSLTSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHNDLSREEKIEIGWACKRLIDYGRLQFLRASGLEAECVVYCEPDVSPENSCILA 575
            AP   RCS+F+ +K RYC +        CG H+             T S+ Q K     R+ CPLDPKHTV E +L  HLK CN +++ + +    +YR   N G    A   S     +  L+ EE   +  K R   S         +   +    +    L     +    ++ ++H+ QQASLV +L R GLL +    VE GAGRG L   V  A    P    +LVER+  +FK D   +   +GS F R ++DI+ L +  +PL +S               +T P+V +GKH+CG ATDLSLR + +  +        KED   E A +       +  +     +K E+     +G+ +A CC+H C +  YVG E + ++  L R DF++ Q+ + W     S + SR                                                                 L+  E+  +G  CKRLID+GR+++L+  G  A    Y  P +SPEN  + A
Sbjct:   12 APLSGRCSYFVVKKRRYCRMVTARGHRLCGEHR-------------TESENQGK-----RIRCPLDPKHTVDEDKLEKHLKKCNSREKPKPV----YYRHNVNGGPED-AEENSKQQVPLCDLSKEEIEIMITKLRKATS--------GLNSTITDRTLTHTALREALDDPKNGDSASKHLKQQASLVGNLERLGLLGSNRCFVEFGAGRGKLSHWVARALQGVPNVHFLLVERASTRFKVDG--KHQNQGSMFGRLQIDIQHLSLDKVPLLTS---------------ETLPVVGIGKHLCGAATDLSLRCLVERYRV-------KEDNDTEPATKRLKADPTETQQQQRDPDK-EVNSSPTLGIAVALCCHHKCEWKHYVGKEFFSSQ-GLDREDFQIFQRMSSWATCEKSCSLSRAASAEPPQEHGWGESSQCAAEVLEM----------------------------------------LTVRERESLGLLCKRLIDHGRIEYLQQRGFMATLQYYTSPCISPENVLLTA 448          
BLAST of NO01G03560 vs. NCBI_GenBank
Match: XP_005482098.2 (PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog [Zonotrichia albicollis])

HSP 1 Score: 181.4 bits (459), Expect = 8.200e-42
Identity = 156/533 (29.27%), Postives = 244/533 (45.78%), Query Frame = 0
Query:   48 PKPDRCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAGRATHASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAF---PQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFXXXXXXXVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTKTRKEDKVEEKAEEGATTALADI--DKANGTREKQEIKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACWVP-SLTSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHNDLSREEKIEIGWACKRLIDYGRLQFLRASGLEAECVVYCEPDVSPENSCILA 575
            P+P RC+ F+ RK R+C +   P   +CG H H                 +E++  ++R+PCPLDPKHTVYE +L  HLK CN +++ +     P Y V   +      +        +S+L++EE + L  + +  ++    H +  ++          + L    S+    E+  +H+ QQAS++ ++ R  LL      VE GAGRG L   V +A       + +LVER+  +FK D   +R    S FER ++DI+ L +  +P+               +  +  P+V +GKH+CG ATDL+LR +       +   T  + K EE A +    A  ++   K+ G     E  + V  G+VIA CC+H C++  YVG E +++ + L   +F   Q+ + W    +  + G                                      XXXXXXXXXXXX              LS EE+ E+G  CKRLID+GR+++L+  G +A    Y E  VS EN  + A
Sbjct:   20 PEPGRCAHFVLRKKRFCRMIPAPGRRFCGEHGH-----------------EEEQNDRKRIPCPLDPKHTVYEDQLQKHLKKCNSREKPK-----PVYFVQDINAGLKDVSEIPEKQVPLSSLSIEELQNLITRLKKASNGLELHLKEQILSH--------QALQEALSDPKNGESAFKHLKQQASILGNMERLHLLGPGRCFVEFGAGRGKLSHWVDIALENVESVQFLLVERATTRFKVDGKHKR--RDSIFERLQVDIQHLCLNKVPI---------------LEKKKLPVVGIGKHLCGAATDLALRCL------VESYTTCCDGKDEEPAPKRCRAAQTEVAPHKSAGNESTTEDHKPV-AGIVIALCCHHKCDWTHYVGREFFKS-VGLGPVEFHYFQRMSSWATCGMQETTG-----------------------------KASTSEDSEXXXXXXXXXXXXLSSTASGSDTLQGTLSVEERKELGCLCKRLIDHGRIEYLQQQGYKAALQYYTEAAVSLENVLLTA 468          
The following BLAST results are available for this feature:
BLAST of NO01G03560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29297.11.300e-14852.66trna guanosine-2 -o-methyltransferase trm13 [Nanno... [more]
XP_005856020.12.700e-6162.94coiled-coil domain containing 76, partial [Nannoch... [more]
XP_012195702.13.900e-4427.68hypothetical protein SPRG_19285 [Saprolegnia paras... [more]
OQR96828.16.700e-4427.86tRNA guanosine-2'-O-methyltransferase [Thraustothe... [more]
XP_008615902.18.800e-4427.49hypothetical protein SDRG_11634 [Saprolegnia dicli... [more]
XP_021380827.12.000e-4327.76tRNA:m(4)X modification enzyme TRM13 homolog [Lonc... [more]
XP_009086749.22.800e-4227.54PREDICTED: tRNA:m(4)X modification enzyme TRM13 ho... [more]
OQR90398.13.700e-4227.17tRNA guanosine-2'-O-methyltransferase [Achlya hypo... [more]
XP_007901106.18.200e-4227.90PREDICTED: tRNA:m(4)X modification enzyme TRM13 ho... [more]
XP_005482098.28.200e-4229.27PREDICTED: tRNA:m(4)X modification enzyme TRM13 ho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007950NSK007950Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03560.1NO01G03560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636714gene_359Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100029g38gene1339Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03560.1NO01G03560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03560 ID=NO01G03560|Name=NO01G03560|organism=Nannochloropsis oceanica|type=gene|length=2169bp
CTCTAATCCAGAGGGCTGATTTTCTTCTAAAGGGATCCCGAAAAGGTCGA
CAAGGTTGAGCCTTTGGCTAGTTTTGTCCTCATGCTTGTGATGGTAAATC
GTCTGAGTTGTTCTTGAACGTCTGTTTTAGCCAGGAAAGAAATCGAGGGG
GTAAAGGTCGGTGACCGCGAGTTATTATTCGGGAACGTAGACTCGATGCT
CTGTGTCGTGGCTGATCAACCTAGCCAAACAAATCCACGCCACAACCTTT
GATAAATCTATCCCTCCTCAAAGCCGCAGAATGCGATGGAGAGCGTTTCA
CCTCCTGTTTCTGAATCAGACGCCATTAAGGTCAATGTTACACCAATATC
ACCAGCGCTACCATCTGCGTCATCATCGTCCACCACTTCCACCACCGATA
CCCCCGGGCTTATCCCTCTCTATGCCCCCAAGCCAGACCGCTGCTCCTTC
TTCCTTAAGAGGAAAATGCGCTACTGTACCGTGCCTCGACTGCCTGACTC
AGTCTGGTGTGGGAACCATCAACACCTTGCTGCGGGGCACGACGACGACG
ATGCCAAGCCCACGCGGAGCAAAACTCAGGAGAAACGGGGCGGACAACGC
CGCCTGCCTTGCCCTTTGGATCCCAAACACACTGTGTACGAACGCGAGCT
CAACGCACATCTCAAGGTGTGCAATGTTAAGAAGGAGATGCGAGGCTTGG
AACGTCAACCGTTCTATCGAGTGGGGGCCAACAGTGGTGCTGCTGGTAGA
GCCACACACGCATCCCCCCCTTCTGCCACTGTATCCACCCTCACAGTAGA
AGAAGCCCGCGCCCTCTTTGCCAAAGCTCGCCACCTAGCTTCGGAAAAGC
GACCTCATCCTCGGGGCGACGTGATCGAGCAATTAATCAAGGGACCAGTA
GCCACGAAAATCCTCGCCAGCATTGAAAGCAACAACGTGACCAGCGAAGC
AAAAGCGCGGCATGTCATCCAACAAGCGTCTCTTGTTTCCCATTTAAACC
GTCGCGGCCTTTTATACAATCGGAGTACGTGCGTAGAAATGGGTGCCGGC
CGAGGGACTTTGGGACAAGCTGTTCATTTGGCTTTCCCCCAAGCTCGCGT
CATGCTGGTCGAGAGATCAGGTGTTAAGTTCAAGGCGGACGCGCCCTTTC
GAAGGACGGGGGAGGGATCCTACTTCGAGCGATATCGATTGGATATCCGT
GATTTATGGATCAAGGGACTCCCGCTTTCTTCTTCGTCGCCGTCCTCCTT
CTCCTCCTCCTCGTCCCCGTCGGTGGCGGCGCAGACCCCTCCCTTAGTGT
TCATGGGCAAGCACGTATGTGGAGTGGCTACCGATTTGTCATTGCGTGCG
ATTGCTAAGTTTCTTCAGGCGGCTGACAAGACCAAGACGAGGAAGGAAGA
TAAAGTGGAAGAAAAAGCCGAAGAAGGAGCAACGACGGCACTGGCCGATA
TAGATAAAGCAAATGGAACGAGAGAAAAGCAAGAAATCAAAGAGGATGTA
AATGTAGGAGTAGTAATAGCAACCTGCTGTTATCATGTCTGCAATTATGA
TGATTATGTCGGTATGGAAACGTGGGAGAACGAATTAAAGCTGACAAGGG
CGGATTTTGAGGTGGCTCAAAAGAGTGCTTGTTGGGTTCCCTCCTTGACC
AGCTCTAGGGGTCACCGGCATAAAAGCAGGGCACGGAAGGCGGCAGCAGC
AGCAGCAGCAGCAACAATACCAACAACAACAACTACTACTATTACTACTA
CTACCACTAGAATGGAGGCTGAGGGAGAGGGCCGGGAGGAAGAAGAGAAA
AGGGAGGAGGAGGGAAGGGAGGAGGAAGAGGAAGAGTTTGCCTCACACAA
TGACCTGAGCAGGGAGGAGAAGATTGAGATTGGCTGGGCGTGTAAACGGT
TGATCGACTATGGTCGACTGCAGTTTTTGCGAGCAAGTGGGTTAGAAGCA
GAGTGTGTCGTATATTGTGAGCCGGATGTATCGCCGGAAAATTCGTGCAT
CTTGGCGTGGTCGTCTCGGGCTGGGGAAGGGGAGGAGAGAAAGCTAAGGG
ATGGAGAGAGTGGTGGTGAAAAAGAAGATTTGGATGAATGAGTGTACGAA
TATAGTTTTGATAGGATATGCGACAAGGCGCATTGCCATGCAATGCAGAT
AAGTGCCGCGTCTTTCTTA
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protein sequence of NO01G03560.1

>NO01G03560.1-protein ID=NO01G03560.1-protein|Name=NO01G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MESVSPPVSESDAIKVNVTPISPALPSASSSSTTSTTDTPGLIPLYAPKP
DRCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEK
RGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANS
GAAGRATHASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQL
IKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCV
EMGAGRGTLGQAVHLAFPQARVMLVERSGVKFKADAPFRRTGEGSYFERY
RLDIRDLWIKGLPLSSSSPSSFSSSSSPSVAAQTPPLVFMGKHVCGVATD
LSLRAIAKFLQAADKTKTRKEDKVEEKAEEGATTALADIDKANGTREKQE
IKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACW
VPSLTSSRGHRHKSRARKAAAAAAAATIPTTTTTTITTTTTRMEAEGEGR
EEEEKREEEGREEEEEEFASHNDLSREEKIEIGWACKRLIDYGRLQFLRA
SGLEAECVVYCEPDVSPENSCILAWSSRAGEGEERKLRDGESGGEKEDLD
E*
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Synonyms
Publications