NO01G03560.1, NO01G03560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03560.1
Unique NameNO01G03560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2169
Alignment locationchr1:942709..944877 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:942709..944877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03560.1 vs.
Match: EWM29297.1 (trna guanosine-2 -o-methyltransferase trm13 [Nannochloropsis gaditana])

HSP 1 Score: 545.4 bits (1404), Expect = 2.200e-151
Identity = 320/600 (53.33%), Postives = 394/600 (65.67%), Query Frame = 0 
Query:   19 TPISPALPSASSSSTTSTTDTPGLIPLYAPKPDRCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAGRATHASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAFPQARVMLVERSGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFSSSSSPSVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTK---TRKEDKVEE--KAEEGATTALADIDKANGTREKQEIKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACWVPSLTSSRGHRHKSRARKAAAAAAAATIPTTTTTTITTTTTRMEAEGEGREEEEK-----REEE--------------GREEEEEEFASHN---DLSREEKIEIGWACKRLIDYGRLQFLRASGLEAECVVYCEPDVSPENSCILAWSSRAGEGEERKLRDGE 592
            TP    +P +  + T       GL     PK DRC+FFLKRK+R+CTVPRLP S WCGNHQHL AG+++  A   RSKTQEKRGGQRR+PCPLD  HTVYEREL+AHL+VCNVK+E + LE +PFYR   NSG+  R      P      L V+E  A+ A+ R L  +K+ HPRG+ +EQ+  GPVA KILA++ + N TSE+KARH++QQASL+SHL+RRGLL  RSTCVE+GAGRGTLG AVH AFP+ARV+LVER+GV+ KADAP+RRTGEG  F RYRLDIRDLWI GLPL                   T PLVFMGKHVCGVATDLSLRA+A +++  + +K      E   E+  +  EGAT    D   +   +   + K    VG+VIATCCYHVC Y+DYVG+E WEN+L L R +FEVAQ+SACWV SLTS+RGHR+K R R+   A   +          +       AEGEG  E+++     REE               GR + E + A  +    LSR++KI+IG ACKRLIDYGRL +LRASGLEAEC++YCEPDVSPENSCILAW+    E E    R+ E
Sbjct:    9 TPSEAVIPPSPLTGTDI-----GLKIRCPPKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENC-AAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRR------PGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGP--------------GGLTSPLVFMGKHVCGVATDLSLRAVADYVRDFEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYAD-------SCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILAWTP-INEEEAENFRNVE 574
The following BLAST results are available for this feature:
BLAST of NO01G03560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29297.12.200e-15153.33trna guanosine-2 -o-methyltransferase trm13 [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03560NO01G03560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03560.1NO01G03560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03560.1.cds1NO01G03560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03560.1 ID=NO01G03560.1|Name=NO01G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp
CTCTAATCCAGAGGGCTGATTTTCTTCTAAAGGGATCCCGAAAAGGTCGA
CAAGGTTGAGCCTTTGGCTAGTTTTGTCCTCATGCTTGTGATGGTAAATC
GTCTGAGTTGTTCTTGAACGTCTGTTTTAGCCAGGAAAGAAATCGAGGGG
GTAAAGGTCGGTGACCGCGAGTTATTATTCGGGAACGTAGACTCGATGCT
CTGTGTCGTGGCTGATCAACCTAGCCAAACAAATCCACGCCACAACCTTT
GATAAATCTATCCCTCCTCAAAGCCGCAGAATGCGATGGAGAGCGTTTCA
CCTCCTGTTTCTGAATCAGACGCCATTAAGGTCAATGTTACACCAATATC
ACCAGCGCTACCATCTGCGTCATCATCGTCCACCACTTCCACCACCGATA
CCCCCGGGCTTATCCCTCTCTATGCCCCCAAGCCAGACCGCTGCTCCTTC
TTCCTTAAGAGGAAAATGCGCTACTGTACCGTGCCTCGACTGCCTGACTC
AGTCTGGTGTGGGAACCATCAACACCTTGCTGCGGGGCACGACGACGACG
ATGCCAAGCCCACGCGGAGCAAAACTCAGGAGAAACGGGGCGGACAACGC
CGCCTGCCTTGCCCTTTGGATCCCAAACACACTGTGTACGAACGCGAGCT
CAACGCACATCTCAAGGTGTGCAATGTTAAGAAGGAGATGCGAGGCTTGG
AACGTCAACCGTTCTATCGAGTGGGGGCCAACAGTGGTGCTGCTGGTAGA
GCCACACACGCATCCCCCCCTTCTGCCACTGTATCCACCCTCACAGTAGA
AGAAGCCCGCGCCCTCTTTGCCAAAGCTCGCCACCTAGCTTCGGAAAAGC
GACCTCATCCTCGGGGCGACGTGATCGAGCAATTAATCAAGGGACCAGTA
GCCACGAAAATCCTCGCCAGCATTGAAAGCAACAACGTGACCAGCGAAGC
AAAAGCGCGGCATGTCATCCAACAAGCGTCTCTTGTTTCCCATTTAAACC
GTCGCGGCCTTTTATACAATCGGAGTACGTGCGTAGAAATGGGTGCCGGC
CGAGGGACTTTGGGACAAGCTGTTCATTTGGCTTTCCCCCAAGCTCGCGT
CATGCTGGTCGAGAGATCAGGTGTTAAGTTCAAGGCGGACGCGCCCTTTC
GAAGGACGGGGGAGGGATCCTACTTCGAGCGATATCGATTGGATATCCGT
GATTTATGGATCAAGGGACTCCCGCTTTCTTCTTCGTCGCCGTCCTCCTT
CTCCTCCTCCTCGTCCCCGTCGGTGGCGGCGCAGACCCCTCCCTTAGTGT
TCATGGGCAAGCACGTATGTGGAGTGGCTACCGATTTGTCATTGCGTGCG
ATTGCTAAGTTTCTTCAGGCGGCTGACAAGACCAAGACGAGGAAGGAAGA
TAAAGTGGAAGAAAAAGCCGAAGAAGGAGCAACGACGGCACTGGCCGATA
TAGATAAAGCAAATGGAACGAGAGAAAAGCAAGAAATCAAAGAGGATGTA
AATGTAGGAGTAGTAATAGCAACCTGCTGTTATCATGTCTGCAATTATGA
TGATTATGTCGGTATGGAAACGTGGGAGAACGAATTAAAGCTGACAAGGG
CGGATTTTGAGGTGGCTCAAAAGAGTGCTTGTTGGGTTCCCTCCTTGACC
AGCTCTAGGGGTCACCGGCATAAAAGCAGGGCACGGAAGGCGGCAGCAGC
AGCAGCAGCAGCAACAATACCAACAACAACAACTACTACTATTACTACTA
CTACCACTAGAATGGAGGCTGAGGGAGAGGGCCGGGAGGAAGAAGAGAAA
AGGGAGGAGGAGGGAAGGGAGGAGGAAGAGGAAGAGTTTGCCTCACACAA
TGACCTGAGCAGGGAGGAGAAGATTGAGATTGGCTGGGCGTGTAAACGGT
TGATCGACTATGGTCGACTGCAGTTTTTGCGAGCAAGTGGGTTAGAAGCA
GAGTGTGTCGTATATTGTGAGCCGGATGTATCGCCGGAAAATTCGTGCAT
CTTGGCGTGGTCGTCTCGGGCTGGGGAAGGGGAGGAGAGAAAGCTAAGGG
ATGGAGAGAGTGGTGGTGAAAAAGAAGATTTGGATGAATGAGTGTACGAA
TATAGTTTTGATAGGATATGCGACAAGGCGCATTGCCATGCAATGCAGAT
AAGTGCCGCGTCTTTCTTA
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protein sequence of NO01G03560.1

>NO01G03560.1-protein ID=NO01G03560.1-protein|Name=NO01G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MESVSPPVSESDAIKVNVTPISPALPSASSSSTTSTTDTPGLIPLYAPKP
DRCSFFLKRKMRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEK
RGGQRRLPCPLDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANS
GAAGRATHASPPSATVSTLTVEEARALFAKARHLASEKRPHPRGDVIEQL
IKGPVATKILASIESNNVTSEAKARHVIQQASLVSHLNRRGLLYNRSTCV
EMGAGRGTLGQAVHLAFPQARVMLVERSGVKFKADAPFRRTGEGSYFERY
RLDIRDLWIKGLPLSSSSPSSFSSSSSPSVAAQTPPLVFMGKHVCGVATD
LSLRAIAKFLQAADKTKTRKEDKVEEKAEEGATTALADIDKANGTREKQE
IKEDVNVGVVIATCCYHVCNYDDYVGMETWENELKLTRADFEVAQKSACW
VPSLTSSRGHRHKSRARKAAAAAAAATIPTTTTTTITTTTTRMEAEGEGR
EEEEKREEEGREEEEEEFASHNDLSREEKIEIGWACKRLIDYGRLQFLRA
SGLEAECVVYCEPDVSPENSCILAWSSRAGEGEERKLRDGESGGEKEDLD
E*
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mRNA from alignment at chr1:942709..944877+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03560.1 ID=NO01G03560.1|Name=NO01G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp|location=Sequence derived from alignment at chr1:942709..944877+ (Nannochloropsis oceanica)
CTCTAATCCAGAGGGCTGATTTTCTTCTAAAGGGATCCCGAAAAGGTCGA
CAAGGTTGAGCCTTTGGCTAGTTTTGTCCTCATGCTTGTGATGGTAAATC
GTCTGAGTTGTTCTTGAACGTCTGTTTTAGCCAGGAAAGAAATCGAGGGG
GTAAAGGTCGGTGACCGCGAGTTATTATTCGGGAACGTAGACTCGATGCT
CTGTGTCGTGGCTGATCAACCTAGCCAAACAAATCCACGCCACAACCTTT
GATAAATCTATCCCTCCTCAAAGCCGCAGAATGCGATGGAGAGCGTTTCA
CCTCCTGTTTCTGAATCAGACGCCATTAAGGTCAATGTTACACCAATATC
ACCAGCGCTACCATCTGCGTCATCATCGTCCACCACTTCCACCACCGATA
CCCCCGGGCTTATCCCTCTCTATGCCCCCAAGCCAGACCGCTGCTCCTTC
TTCCTTAAGAGGAAAATGCGCTACTGTACCGTGCCTCGACTGCCTGACTC
AGTCTGGTGTGGGAACCATCAACACCTTGCTGCGGGGCACGACGACGACG
ATGCCAAGCCCACGCGGAGCAAAACTCAGGAGAAACGGGGCGGACAACGC
CGCCTGCCTTGCCCTTTGGATCCCAAACACACTGTGTACGAACGCGAGCT
CAACGCACATCTCAAGGTGTGCAATGTTAAGAAGGAGATGCGAGGCTTGG
AACGTCAACCGTTCTATCGAGTGGGGGCCAACAGTGGTGCTGCTGGTAGA
GCCACACACGCATCCCCCCCTTCTGCCACTGTATCCACCCTCACAGTAGA
AGAAGCCCGCGCCCTCTTTGCCAAAGCTCGCCACCTAGCTTCGGAAAAGC
GACCTCATCCTCGGGGCGACGTGATCGAGCAATTAATCAAGGGACCAGTA
GCCACGAAAATCCTCGCCAGCATTGAAAGCAACAACGTGACCAGCGAAGC
AAAAGCGCGGCATGTCATCCAACAAGCGTCTCTTGTTTCCCATTTAAACC
GTCGCGGCCTTTTATACAATCGGAGTACGTGCGTAGAAATGGGTGCCGGC
CGAGGGACTTTGGGACAAGCTGTTCATTTGGCTTTCCCCCAAGCTCGCGT
CATGCTGGTCGAGAGATCAGGTGTTAAGTTCAAGGCGGACGCGCCCTTTC
GAAGGACGGGGGAGGGATCCTACTTCGAGCGATATCGATTGGATATCCGT
GATTTATGGATCAAGGGACTCCCGCTTTCTTCTTCGTCGCCGTCCTCCTT
CTCCTCCTCCTCGTCCCCGTCGGTGGCGGCGCAGACCCCTCCCTTAGTGT
TCATGGGCAAGCACGTATGTGGAGTGGCTACCGATTTGTCATTGCGTGCG
ATTGCTAAGTTTCTTCAGGCGGCTGACAAGACCAAGACGAGGAAGGAAGA
TAAAGTGGAAGAAAAAGCCGAAGAAGGAGCAACGACGGCACTGGCCGATA
TAGATAAAGCAAATGGAACGAGAGAAAAGCAAGAAATCAAAGAGGATGTA
AATGTAGGAGTAGTAATAGCAACCTGCTGTTATCATGTCTGCAATTATGA
TGATTATGTCGGTATGGAAACGTGGGAGAACGAATTAAAGCTGACAAGGG
CGGATTTTGAGGTGGCTCAAAAGAGTGCTTGTTGGGTTCCCTCCTTGACC
AGCTCTAGGGGTCACCGGCATAAAAGCAGGGCACGGAAGGCGGCAGCAGC
AGCAGCAGCAGCAACAATACCAACAACAACAACTACTACTATTACTACTA
CTACCACTAGAATGGAGGCTGAGGGAGAGGGCCGGGAGGAAGAAGAGAAA
AGGGAGGAGGAGGGAAGGGAGGAGGAAGAGGAAGAGTTTGCCTCACACAA
TGACCTGAGCAGGGAGGAGAAGATTGAGATTGGCTGGGCGTGTAAACGGT
TGATCGACTATGGTCGACTGCAGTTTTTGCGAGCAAGTGGGTTAGAAGCA
GAGTGTGTCGTATATTGTGAGCCGGATGTATCGCCGGAAAATTCGTGCAT
CTTGGCGTGGTCGTCTCGGGCTGGGGAAGGGGAGGAGAGAAAGCTAAGGG
ATGGAGAGAGTGGTGGTGAAAAAGAAGATTTGGATGAATGAGTGTACGAA
TATAGTTTTGATAGGATATGCGACAAGGCGCATTGCCATGCAATGCAGAT
AAGTGCCGCGTCTTTCTTA
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Coding sequence (CDS) from alignment at chr1:942709..944877+

>NO01G03560.1 ID=NO01G03560.1|Name=NO01G03560.1|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr1:942709..944877+ (Nannochloropsis oceanica)
ATGGAGAGCGTTTCACCTCCTGTTTCTGAATCAGACGCCATTAAGGTCAA
TGTTACACCAATATCACCAGCGCTACCATCTGCGTCATCATCGTCCACCA
CTTCCACCACCGATACCCCCGGGCTTATCCCTCTCTATGCCCCCAAGCCA
GACCGCTGCTCCTTCTTCCTTAAGAGGAAAATGCGCTACTGTACCGTGCC
TCGACTGCCTGACTCAGTCTGGTGTGGGAACCATCAACACCTTGCTGCGG
GGCACGACGACGACGATGCCAAGCCCACGCGGAGCAAAACTCAGGAGAAA
CGGGGCGGACAACGCCGCCTGCCTTGCCCTTTGGATCCCAAACACACTGT
GTACGAACGCGAGCTCAACGCACATCTCAAGGTGTGCAATGTTAAGAAGG
AGATGCGAGGCTTGGAACGTCAACCGTTCTATCGAGTGGGGGCCAACAGT
GGTGCTGCTGGTAGAGCCACACACGCATCCCCCCCTTCTGCCACTGTATC
CACCCTCACAGTAGAAGAAGCCCGCGCCCTCTTTGCCAAAGCTCGCCACC
TAGCTTCGGAAAAGCGACCTCATCCTCGGGGCGACGTGATCGAGCAATTA
ATCAAGGGACCAGTAGCCACGAAAATCCTCGCCAGCATTGAAAGCAACAA
CGTGACCAGCGAAGCAAAAGCGCGGCATGTCATCCAACAAGCGTCTCTTG
TTTCCCATTTAAACCGTCGCGGCCTTTTATACAATCGGAGTACGTGCGTA
GAAATGGGTGCCGGCCGAGGGACTTTGGGACAAGCTGTTCATTTGGCTTT
CCCCCAAGCTCGCGTCATGCTGGTCGAGAGATCAGGTGTTAAGTTCAAGG
CGGACGCGCCCTTTCGAAGGACGGGGGAGGGATCCTACTTCGAGCGATAT
CGATTGGATATCCGTGATTTATGGATCAAGGGACTCCCGCTTTCTTCTTC
GTCGCCGTCCTCCTTCTCCTCCTCCTCGTCCCCGTCGGTGGCGGCGCAGA
CCCCTCCCTTAGTGTTCATGGGCAAGCACGTATGTGGAGTGGCTACCGAT
TTGTCATTGCGTGCGATTGCTAAGTTTCTTCAGGCGGCTGACAAGACCAA
GACGAGGAAGGAAGATAAAGTGGAAGAAAAAGCCGAAGAAGGAGCAACGA
CGGCACTGGCCGATATAGATAAAGCAAATGGAACGAGAGAAAAGCAAGAA
ATCAAAGAGGATGTAAATGTAGGAGTAGTAATAGCAACCTGCTGTTATCA
TGTCTGCAATTATGATGATTATGTCGGTATGGAAACGTGGGAGAACGAAT
TAAAGCTGACAAGGGCGGATTTTGAGGTGGCTCAAAAGAGTGCTTGTTGG
GTTCCCTCCTTGACCAGCTCTAGGGGTCACCGGCATAAAAGCAGGGCACG
GAAGGCGGCAGCAGCAGCAGCAGCAGCAACAATACCAACAACAACAACTA
CTACTATTACTACTACTACCACTAGAATGGAGGCTGAGGGAGAGGGCCGG
GAGGAAGAAGAGAAAAGGGAGGAGGAGGGAAGGGAGGAGGAAGAGGAAGA
GTTTGCCTCACACAATGACCTGAGCAGGGAGGAGAAGATTGAGATTGGCT
GGGCGTGTAAACGGTTGATCGACTATGGTCGACTGCAGTTTTTGCGAGCA
AGTGGGTTAGAAGCAGAGTGTGTCGTATATTGTGAGCCGGATGTATCGCC
GGAAAATTCGTGCATCTTGGCGTGGTCGTCTCGGGCTGGGGAAGGGGAGG
AGAGAAAGCTAAGGGATGGAGAGAGTGGTGGTGAAAAAGAAGATTTGGAT
GAATGA
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Synonyms
Publications