NO01G03420, NO01G03420 (gene) Nannochloropsis oceanica

Overview
NameNO01G03420
Unique NameNO01G03420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1267
Alignment locationchr1:894679..895945 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:894679..895945 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G03420 vs. NCBI_GenBank
Match: EWM29267.1 (hypothetical protein Naga_100029g24 [Nannochloropsis gaditana])

HSP 1 Score: 431.4 bits (1108), Expect = 2.700e-117
Identity = 223/357 (62.46%), Postives = 270/357 (75.63%), Query Frame = 0 
Query:    7 VGAAGLAVSLLLVDVQAFLLSS------FRPP----TRGILSAVPIRTRPSSTIASASTMPDVRAYGNE--EEGDIEIAWFEALQAYGGDAKPYDPLLRILSSVSSWKQFRTQVENAWVTARVESDGDRGRLIFKLEAYLDALQEYMHVHTLFTEVLMPTANGCDGMFMERVRMEAFEAAQTAIRSKQEQYLATHVAFWADLAAVLRSQEDIPVGEVAKLDQVSPLPAPYGQGESGLVLLPMPSLLEWTRDELGGGVEEQVGALLLFSSVVLPALERVKKEKSRESLVEYASMWGRLWRKAGRWFGSDTESVEFLDDLYRQTGGRVETNDDVTRTGISLAGVGRVERKGMEEAWLQE 352
            V A  LAVSLLL  ++AF LS+      F+ P     R ++S  P+    ++T  +AS  PD+  +GN   E GD+++ WFEALQAYG D++P DPLL++L+ VSSW QF T+VEN WVT RVE + DR RL  KL  ++DALQEY+H HTLFT+VL PTANGCDGMF+ERVR EAFE+AQ+ IR KQE YLA HV FWADLAAVLRSQEDIP G VA+LDQ   LPAPYGQG+SG+V LP PSL  W  DE+GGGVE+QVGA+LL  + VLPALE  K+E+S+ES   YA +WGRLWRKAG WFG+D ES  FL++LYR TGGRV  NDD +RTG+SLAGVG VER+GME+AWLQE
Sbjct:   11 VPAVTLAVSLLL-QIEAFPLSTARAGSVFKGPRLRLKRLLVSGAPVAAPVTAT--AASVAPDLE-FGNSGIEGGDVDVEWFEALQAYGRDSRPSDPLLKLLAGVSSWMQFETRVENEWVTNRVECEEDRDRLKMKLGDFMDALQEYVHAHTLFTQVLSPTANGCDGMFLERVRFEAFESAQSTIRRKQEGYLAAHVRFWADLAAVLRSQEDIPQGGVAQLDQTIALPAPYGQGDSGIVSLPPPSLFPWALDEVGGGVEDQVGAVLLLKAAVLPALETAKRERSKESFSRYAKLWGRLWRKAGTWFGADPESSAFLEELYRSTGGRVAMNDDSSRTGLSLAGVGPVERRGMEDAWLQE 363
The following BLAST results are available for this feature:
BLAST of NO01G03420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29267.12.700e-11762.46hypothetical protein Naga_100029g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007974NSK007974Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03420.1NO01G03420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577049gene_344Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100029g24gene1353Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03420.1NO01G03420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03420 ID=NO01G03420|Name=NO01G03420|organism=Nannochloropsis oceanica|type=gene|length=1267bp
ATGTCGACCCTGCGGCGTGTAGGAGCGGCGGGCCTCGCTGTGAGCCTCCT
CCTCGTTGACGTTCAAGCTTTCCTCCTTTCCTCCTTCAGGCCACCGACAA
GAGgtaagccaagcaccgtttgtcctcctgcctccctcccacccctagca
acggggggcaagcacccgccttctttcgcccttgtctcttatcccctcgt
tcacccagGCATTCTATCAGCCGTTCCTATCCGCACGCGGCCCAGCAGCA
CAATCGCCTCCGCCAGCACCATGCCGGACGTCCGGGCGTACGGTAACGAG
GAGGAGGGAGATATCGAGATCGCATGGTTCGAGGCACTGCAGGCATATGG
GGGCGACGCCAAACCGTATGACCCTCTGCTGAGGATCTTGTCGAGCGTCT
CGTCGTGGAAGCAATTCCGGACCCAGGTCGAGAACGCATGGGTGACCGCC
CGGGTTGAAAGTGACGGAGACAGAGGCCGCCTCATCTTTAAGCTTGAAGC
GTACCTAGATGCATTGCAAGAGTATATGCATGTGCACACGCTTTTTACCG
AAGTACTTATGCCGACGGCCAACGGGTGCGACGGCATGTTCATGGAGCGG
GTACGAATGGAGGCATTCGAGGCCGCACAGACTGCGATCCGAAGCAAGCA
AGAGCAGTACCTTGCCACGCACGTTGCCTTTTGGGCGGACCTCGCCGCAG
TCTTGCGCTCGCAAGAGGATATTCCCGTTGGGGAAGTGGCAAAGTTGGAT
CAGGTCTCCCCATTGCCTGCTCCGTACGGGCAGGGGGAGAGTGGATTAGT
GCTGTTGCCGATGCCTTCTCTGTTGGAATGGACGCGTGATGAATTGGGGG
GAGGAGTAGAGGAACAGGTGGGTGCCCTGTTGTTGTTTTCATCGGTGGTT
TTACCGGCGTTGGAGAGGGTCAAGAAGGAGAAGAGTAGGGAGAGTTTGGT
GGAGTATGCGTCAATGTGGGGGAGGCTGTGGAGGAAGGCTGGGAGGTGGT
TTGGGAGCGATACTGAATCGGTGGAGTTCTTGGATGACCTTTACAGGCAG
ACAGGGGGGAGGGTGGAGACGAACGATGATGTGACAAGGACGGGCATAAG
CCTCGCTGGTGTTGGCAGGGTAGAGAGGAAGGGGATGGAGGAGGCTTGGT
TGCAGGAGTAGAAGAAGACGTGGATGGGAGTCGCGCAGGATTGGCGTTAT
TGCCAAATCAACCATGTGCAAAAGTAAAGGGGGAAAAACGCAGACAACAG
CAATAACAACCACACCA
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protein sequence of NO01G03420.1

>NO01G03420.1-protein ID=NO01G03420.1-protein|Name=NO01G03420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MSTLRRVGAAGLAVSLLLVDVQAFLLSSFRPPTRGILSAVPIRTRPSSTI
ASASTMPDVRAYGNEEEGDIEIAWFEALQAYGGDAKPYDPLLRILSSVSS
WKQFRTQVENAWVTARVESDGDRGRLIFKLEAYLDALQEYMHVHTLFTEV
LMPTANGCDGMFMERVRMEAFEAAQTAIRSKQEQYLATHVAFWADLAAVL
RSQEDIPVGEVAKLDQVSPLPAPYGQGESGLVLLPMPSLLEWTRDELGGG
VEEQVGALLLFSSVVLPALERVKKEKSRESLVEYASMWGRLWRKAGRWFG
SDTESVEFLDDLYRQTGGRVETNDDVTRTGISLAGVGRVERKGMEEAWLQ
E*
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Synonyms
Publications