NO01G03000, NO01G03000 (gene) Nannochloropsis oceanica

Overview
NameNO01G03000
Unique NameNO01G03000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1298
Alignment locationchr1:789363..790660 +

Link to JBrowse

Properties
Property NameValue
DescriptionPseudouridine synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:789363..790660 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0003824catalytic activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR006145PsdUridine_synth_RsuA/RluD
Homology
BLAST of NO01G03000 vs. NCBI_GenBank
Match: EWM29222.1 (pseudouridine synthase [Nannochloropsis gaditana])

HSP 1 Score: 481.1 bits (1237), Expect = 3.400e-132
Identity = 236/328 (71.95%), Postives = 277/328 (84.45%), Query Frame = 0
Query:   73 GNSDLDKCARALDLSAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQRDG--GERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVEDWSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLSSSPL 399
            G+    +   ALDLSAAA+G TVEEVL LA +P   VA+AL +F GL+DC PHAE L RLHHLNFII+QGVYSF EA+ LI+ Q +FLEM FS VY+D DL+V+NKPSDVRMDVPQR G  G+RKWP EFTCSDWLD PGL++PPL+KKRFCHNLDSATSGILCVARNQAAAARVV+LF++R V+KEYLAVVFGHV++   S +T+FIDAPIEKDP SDFRMRIGP+GK+AQTQV VL +G+L LQGPH+NAPVSKL LKPITGRRHQLRVHT+SLG+GIVGD+YV DW++YR+MLHAHKL LP++ +K L L T DPF  L+S  PL
Sbjct:   92 GHVPTTESLHALDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADS-DTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALISPQPL 418          
BLAST of NO01G03000 vs. NCBI_GenBank
Match: CEM11775.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 227.6 bits (579), Expect = 6.700e-56
Identity = 136/332 (40.96%), Postives = 186/332 (56.02%), Query Frame = 0
Query:   67 QAQARDGNSDLDKCARALDLSAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVEDWS------TYRLMLHAHKLFLPISAE---KQLHLETPDPF 390
            Q  A D +      A   DLSAA Q +   E L+LAGVP+  V  A+  F G++D     E L RL   NF+I+ G  + E+   LI+ Q   LE     V++    +V++KP +VRMDVP+      K+  E T +DW        P  DK R CH LD ATSG+L + + + A  R   LF++RK +K+YLA+V+GH    P  + T  +DA IE+DP  +F M+I   GK +QT V VL + +L L+GP    PV+KLLL P TGRRHQLR+H   +GH IVGD     +       +YR+ LHA++L LP   +   + L LE PDPF
Sbjct:   26 QPPAEDPSLPSAIAAPHFDLSAAEQAADGVEALELAGVPAEMVTAAVRRFPGVRDLHVEDEVLARLDQFNFLIQDGALTVEQTHRLIANQPWCLERAIKVVHECEGYVVIDKPDNVRMDVPRTK--SHKYDRELTVADWFK---RRCPSSDKVRPCHQLDHATSGVLVMGKTKEATGRCAVLFSQRKARKQYLALVYGH----PSWDETT-VDAAIEEDPNHEFNMQISESGKPSQTAVKVLQRSHLALEGPLKGTPVAKLLLIPATGRRHQLRLHCRHVGHPIVGDYQYSAYGRGHEPPSYRMCLHAYRLELPFDDDGEGQPLVLEAPDPF 347          
BLAST of NO01G03000 vs. NCBI_GenBank
Match: XP_002502205.1 (pseudouridine synthase [Micromonas commoda] >ACO63463.1 pseudouridine synthase [Micromonas commoda])

HSP 1 Score: 188.3 bits (477), Expect = 4.500e-44
Identity = 116/308 (37.66%), Postives = 166/308 (53.90%), Query Frame = 0
Query:   91 QGSTVEEVLQLAGVPSRNVARALEAFIGLQD-CDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGE----RKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDP--TSDFRMRIGPD-GKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGD-SYVEDWSTYRLMLHAHKLFLPISAEK-QLHLETPDP 389
            +G  + E L  AG+    V   + A   +    D   E   R+++L F+ +      E     I+ Q + LE +F  V++D D  V+NKP  VR+D P+   G+     K+P + +  DWL+      P  D  RFCH LD+ATSG+L  A N+ AA     LF ER+ +K YLA+VFGH   P     T  +D P+ +DP     FR R+ P+ GKA +T+  VL +G L L+G     PVSK+ + P+TGRRHQ+R+H    GH IVGD +Y +D  ++R  LHAHKL LP    +  +    P+P
Sbjct:   56 EGRDLRETLANAGMTPEQVRDVISAHPQVDTRYDLVNEVQPRINYLRFLDDNDRLDGESVSSCIARQPQSLERDFHLVHEDADYAVVNKPWCVRLDTPRGWPGKVRFTPKYPGDLSVEDWLE---RRYPDWDTVRFCHQLDNATSGVLVAASNKRAAGAAAKLFRERRARKTYLAIVFGH---PEQDEWT--VDVPMGRDPDDPKGFRERVDPEHGKACETRFRVLKRGRLNLRGKFEGVPVSKVEVTPVTGRRHQIRLHLQFSGHPIVGDNAYSQDTDSFRTFLHAHKLTLPFDEPRGTMQFVAPEP 355          
BLAST of NO01G03000 vs. NCBI_GenBank
Match: XP_003059545.1 (pseudouridine synthase [Micromonas pusilla CCMP1545] >EEH56677.1 pseudouridine synthase [Micromonas pusilla CCMP1545])

HSP 1 Score: 178.7 bits (452), Expect = 3.600e-41
Identity = 120/328 (36.59%), Postives = 169/328 (51.52%), Query Frame = 0
Query:   70 ARDGNSDLDKCARALDLSAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQ--RDGGER-------KWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPT--SDFRMRI-------GPDGKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGD-SYVEDWSTYRLMLHAHKLFLPISAE 379
            A  G    + C R +    + +G  V  VL  AG+    V     +   L+  D   E + R+++L F+ +      E   + I+ Q   LE  F  V++  D  V+NKP  VR+D P+  +D           K+P + +  DWL+      P  D  RF H LD+ATSG+L  A N+ AA R   LF ER  +K Y+A+VFGH   P     T   DA + +DP+    F+ R+       G +GKA++T+  VL +G   L+G H  A VSK+L+ PITGRRHQ+RVH    G+ IVGD +Y ED  T+R  LHAH L LP  A+
Sbjct:   88 ANPGLDAANLCIRGV----SVEGDDVRAVLANAGLSPTQVDAVTTSHPDLETYDLAREVVPRVNYLRFLHDNDRLGGESVADAIARQPHSLERRFHLVHECEDYAVVNKPWCVRLDTPRGWKDAAGNPLNRFTPKYPGDLSVEDWLEER---YPGWDTVRFVHQLDNATSGVLVAASNKRAAGRAAKLFRERAARKAYIALVFGH---PREDEWT--CDAKLGRDPSDPKGFKERVVVDGEEEGVEGKASETRFKVLQRGTFALRGKHEGADVSKVLVTPITGRRHQIRVHLAHGGYPIVGDAAYSEDKDTFRTFLHAHALTLPFDAK 403          
BLAST of NO01G03000 vs. NCBI_GenBank
Match: OAD07938.1 (hypothetical protein MUCCIDRAFT_104888 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 167.9 bits (424), Expect = 6.300e-38
Identity = 95/240 (39.58%), Postives = 134/240 (55.83%), Query Frame = 0
Query:  161 EMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQ----GPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVED--WSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLS 395
            ++    +Y+D D  +++KP D R+   Q     +    E    +         P + K R  H LD ATSG+  +A N+ AAA    LF +R VKK YLA+V GHV       +  F+D PI+ DP  +FRM I P GK AQT++ VL +GY T +    G     PV+K+ L PI+GRRHQLR+H   +GH IVGD   ED    T+R+MLHAH++ LP+   ++L +   DPF  L++
Sbjct:    3 DLTIKVIYRDDDWFIIDKPYDCRI---QNYANAKDPSVESLLKEQF-------PDISKFRNVHQLDYATSGVFVLALNKKAAAAASKLFRDRTVKKTYLALVNGHV-----EEDEYFVDQPIDDDPNHEFRMAIIPTGKPAQTKIRVLQRGYYTYKEEKTGTEKTLPVTKVSLSPISGRRHQLRLHLKHIGHPIVGDFNYEDVYTDTFRMMLHAHQIILPLPGREELKVVANDPFDELVT 227          
BLAST of NO01G03000 vs. NCBI_GenBank
Match: CEP09287.1 (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 165.6 bits (418), Expect = 3.100e-37
Identity = 97/235 (41.28%), Postives = 130/235 (55.32%), Query Frame = 0
Query:  167 VYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQ----GPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVED--WSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLSS 396
            +++D +  ++NKP D R+   Q      +   E    +         P ++K R  H LD ATSG+  +A N+ AAA    LF ER VKK YLA+V GH        +  F+D PI  DP  DF+M I   GK AQT++ VL +GY T      G     PVSK+ L PI+GRRHQLR+H   LG+ IVGD   ED    T+R+MLHAH++ LP+S E++L     DPF  L+ S
Sbjct:    9 IHRDENWFIINKPYDCRI---QNYANTIEPSVESLLKEQF-------PEIEKFRNVHQLDYATSGVFVLALNKKAAAAASKLFRERAVKKTYLALVNGH-----AKEDAYFVDQPIGDDPNHDFKMAIVASGKTAQTKIQVLERGYYTFHEEKTGVEKTIPVSKVSLSPISGRRHQLRLHLKHLGYPIVGDFNYEDTYTDTFRMMLHAHQIILPLSKEQELKAVADDPFTNLVVS 228          
BLAST of NO01G03000 vs. NCBI_GenBank
Match: GAN08940.1 (RNA pseudouridylate synthase domain-containing protein 1-like [Mucor ambiguus])

HSP 1 Score: 164.1 bits (414), Expect = 9.100e-37
Identity = 96/251 (38.25%), Postives = 137/251 (54.58%), Query Frame = 0
Query:  162 MNFSFVYKDGDLLVMNKPSDVRMD--VPQRDGGERKWPTEFTCSDWL-------DIPGLVD---PPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQ----GPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVED--WSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLS 395
            +    +Y+D D  +++KP D R+      +D         +   D +        +  L+    P + K R  H LD ATSG+  +A N+ AAA    LF +R VKK YLA+V GH+       +  FID PI+ DP  +FRM I P GK AQT++ VL +GY T +    G     PV+K+ L PI+GRRHQLR+H   +GH IVGD   ED    T+R+MLHAH++ LP+   ++L +   DPF  L++
Sbjct:    4 LTIKVIYRDDDWFIIDKPYDCRIQNYANAKDPSGSYIVLNYMLDDVIHSTEKKNKVESLLKEQFPDISKFRNVHQLDYATSGVFVLALNKKAAAAASKLFRDRTVKKTYLALVNGHI-----KEDEYFIDQPIDDDPNHEFRMAIVPTGKPAQTKIRVLQRGYYTYKEDKTGIEKTLPVTKVSLSPISGRRHQLRLHLKHIGHPIVGDFNYEDEYTDTFRMMLHAHQIILPLPDREELKVMADDPFSELVA 249          
BLAST of NO01G03000 vs. NCBI_GenBank
Match: EPB82651.1 (hypothetical protein HMPREF1544_10597 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 160.2 bits (404), Expect = 1.300e-35
Identity = 92/243 (37.86%), Postives = 141/243 (58.02%), Query Frame = 0
Query:  161 EMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEFTCSDWLDIPGLVD---PPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQ----GPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGD-SYVEDWS-TYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLS 395
            ++    +++D D  +++KP D R+    ++      PT         +  L+    P ++K R  H LD ATSG+  +A N+ AAA    LF +R VKK YLA+V GHV       +  F+D PI+ DP  DFRM + P GK AQT++ VL +G+ T +    G     PV+K+ L PI+GRRHQLR+H   +G+ IVGD +Y  +++ T+R+MLHAH++ LP+   ++L +   DPF  L++
Sbjct:    3 DLTIKVIHRDDDWFIIDKPYDCRI----QNYANASDPT---------VESLLKEQFPDINKFRNVHQLDYATSGVFVLALNKKAAAAASKLFRDRTVKKTYLALVNGHV-----KEDEYFVDQPIDDDPHHDFRMAVLPTGKPAQTKIRVLQRGHYTYKEEKTGAEKTIPVTKVSLSPISGRRHQLRLHLKYIGYPIVGDFNYENEYTDTFRMMLHAHQIILPLPGREELKVVADDPFTELVT 227          
BLAST of NO01G03000 vs. NCBI_GenBank
Match: XP_003081218.2 (Pseudouridine synthase, RsuA/RluB/C/D/E/F [Ostreococcus tauri] >CEF99063.1 Pseudouridine synthase, RsuA/RluB/C/D/E/F [Ostreococcus tauri])

HSP 1 Score: 158.3 bits (399), Expect = 5.000e-35
Identity = 110/312 (35.26%), Postives = 152/312 (48.72%), Query Frame = 0
Query:   87 SAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYK--DGDLLVMNKPSDVRMDVPQ------RDGG-------ERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPT--SDFRMRIGPD-GKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGD-SYVEDWS-TYRLMLHAHKLFLPISAE 379
            S+   G T   +L   G  +R V   L     +   D   E   R+ +L F+   G    E A  L   Q   LE  +  VY+  D   + +NKP  VR+D P+       DG        E +W  + +C DWL+       P    RFCH LD+ATSG++  A  ++AAA    LF +RK KK YLAVV+G       +       A + KDP     FR R+  + GKA++T+  VL +GY TL G H    V+ L  KP+TGRRHQ+RVH    G  I+GD +Y    S ++R+ LHA +L +P   E
Sbjct:   14 SSVEHGETAASLLVKRGADARAVEEMLLRHPEVNAYDCATEIAPRMSYLEFLERGGELGSETAAALALRQPGILERKYETVYECFDKAYIAVNKPFAVRLDTPRGWTESDADGNVTEKKRFEPRWEGDASCEDWLN----ATYPNMHHRFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGWPERDEWTTT-----AKLGKDPNCPKGFRERVDEEGGKASETRFKVLRRGYCTLDGAHRGIKVTLLQCKPVTGRRHQIRVHLQHSGFPILGDIAYYSGVSDSFRMFLHALELVMPFPDE 316          
BLAST of NO01G03000 vs. NCBI_GenBank
Match: OUS48913.1 (pseudouridylate synthase, 23S RNA-specific [Ostreococcus tauri])

HSP 1 Score: 158.3 bits (399), Expect = 5.000e-35
Identity = 110/312 (35.26%), Postives = 152/312 (48.72%), Query Frame = 0
Query:   87 SAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYK--DGDLLVMNKPSDVRMDVPQ------RDGG-------ERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPT--SDFRMRIGPD-GKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGD-SYVEDWS-TYRLMLHAHKLFLPISAE 379
            S+   G T   +L   G  +R V   L     +   D   E   R+ +L F+   G    E A  L   Q   LE  +  VY+  D   + +NKP  VR+D P+       DG        E +W  + +C DWL+       P    RFCH LD+ATSG++  A  ++AAA    LF +RK KK YLAVV+G       +       A + KDP     FR R+  + GKA++T+  VL +GY TL G H    V+ L  KP+TGRRHQ+RVH    G  I+GD +Y    S ++R+ LHA +L +P   E
Sbjct:   47 SSVEHGETAASLLVKRGADARAVEEMLLRHPEVNAYDCATEIAPRMSYLEFLERGGELGSETAAALALRQPGILERKYETVYECFDKAYIAVNKPFAVRLDTPRGWTESDADGNVTEKKRFEPRWEGDASCEDWLN----ATYPNMHHRFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGWPERDEWTTT-----AKLGKDPNCPKGFRERVDEEGGKASETRFKVLRRGYCTLDGAHRGIKVTLLQCKPVTGRRHQIRVHLQHSGFPILGDIAYYSGVSDSFRMFLHALELVMPFPDE 349          
The following BLAST results are available for this feature:
BLAST of NO01G03000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29222.13.400e-13271.95pseudouridine synthase [Nannochloropsis gaditana][more]
CEM11775.16.700e-5640.96unnamed protein product [Vitrella brassicaformis C... [more]
XP_002502205.14.500e-4437.66pseudouridine synthase [Micromonas commoda] >ACO63... [more]
XP_003059545.13.600e-4136.59pseudouridine synthase [Micromonas pusilla CCMP154... [more]
OAD07938.16.300e-3839.58hypothetical protein MUCCIDRAFT_104888 [Mucor circ... [more]
CEP09287.13.100e-3741.28hypothetical protein [Parasitella parasitica][more]
GAN08940.19.100e-3738.25RNA pseudouridylate synthase domain-containing pro... [more]
EPB82651.11.300e-3537.86hypothetical protein HMPREF1544_10597 [Mucor circi... [more]
XP_003081218.25.000e-3535.26Pseudouridine synthase, RsuA/RluB/C/D/E/F [Ostreoc... [more]
OUS48913.15.000e-3535.26pseudouridylate synthase, 23S RNA-specific [Ostreo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008025NSK008025Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03000.1NO01G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576860gene_301Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100203g8gene1397Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03000.1NO01G03000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03000 ID=NO01G03000|Name=NO01G03000|organism=Nannochloropsis oceanica|type=gene|length=1298bp
ATGTCGCATTTTCCAAGGTGCTTTGTTGTGGTAAACGTCCTCCTGCTTTT
GCGTCATCCGGCCACTGCGTTCATTCCACGTGCCGACCACCACTGCAGCA
GCGAGCTCAAGCACTCAGGATTAAAGGCATGCCAGCTCCATACTGCCCAC
GTTTCTTGGCTGTATGATTTCACACATGGTCCAGAACCTTTCGTTCTCCA
AGCACAGGCCAGAGATGGCAATTCTGATCTCGATAAGTGCGCTCGTGCCC
TAGACTTATCGGCTGCAGCCCAAGGCTCGACGGTGGAAGAGGTATTGCAA
TTGGCGGGCGTGCCGTCCAGAAACGTGGCGCGGGCTTTAGAAGCCTTTAT
CGGCTTGCAGGACTGCGATCCACATGCCGAAACACTCCGCCGGCTGCACC
ATCTCAATTTTATTATAGAGCAAGGCGTCTACTCCTTTGAGGAAGCAATG
GAGCTGATCTCCACGCAATCGCGCTTTTTGGAAATGAATTTCTCATTTGT
TTATAAAGATGGCGATCTTCTTGTCATGAACAAGCCGAGCGACGTGCGCA
TGGACGTGCCGCAGCGGGACGGCGGAGAAAGGAAGTGGCCGACAGAATTC
ACCTGCTCCGATTGGCTCGACATACCGGGCCTGGTCGACCCTCCTCTTGA
TAAAAAGCGTTTCTGCCACAACTTGGACTCAGCCACTTCGGGCATACTGT
GCGTTGCTCGCAATCAGGCAGCCGCTGCCAGGGTTGTGGATCTTTTTGCG
GAGCGGAAGGTAAAAAAAGAATgtacgtttgtttttcatctctcttgtct
tgcctctcttatgcactcaatcccaccaagcgcacacacacccatccacc
caccaaatggacagATTTAGCAGTAGTTTTTGGCCATGTAGCCGCACCCC
CGGGTAGCAACAACACAATTTTCATCGACGCGCCCATCGAAAAAGACCCG
ACAAGCGACTTCAGAATGCGCATCGGCCCCGACGGAAAGGCGGCCCAAAC
ACAAGTACACGTTCTAGGTCAAGGCTATCTCACTCTGCAAGGACCTCATT
ACAATGCCCCTGTTTCCAAGCTTCTACTCAAGCCGATCACTGGAAGAAGA
CATCAGTTGAGGGTCCACACCCTGTCGCTAGGACACGGAATTGTCGGTGA
TTCCTACGTGGAGGACTGGTCGACGTATCGGTTGATGCTCCACGCGCACA
AACTGTTTTTGCCCATCTCTGCCGAAAAACAATTGCACTTGGAGACGCCA
GACCCTTTCATAGGGCTCTTATCCTCTTCTCCGCTCGGTGAAGGCTAG
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protein sequence of NO01G03000.1

>NO01G03000.1-protein ID=NO01G03000.1-protein|Name=NO01G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MSHFPRCFVVVNVLLLLRHPATAFIPRADHHCSSELKHSGLKACQLHTAH
VSWLYDFTHGPEPFVLQAQARDGNSDLDKCARALDLSAAAQGSTVEEVLQ
LAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAM
ELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEF
TCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFA
ERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKA
AQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGI
VGDSYVEDWSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLSSSPLGE
G*
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