NO01G03000.1, NO01G03000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03000.1
Unique NameNO01G03000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1206
Alignment locationchr1:789363..790660 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:789363..790660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03000.1 vs.
Match: EWM29222.1 (pseudouridine synthase [Nannochloropsis gaditana])

HSP 1 Score: 481.1 bits (1237), Expect = 3.400e-132
Identity = 236/328 (71.95%), Postives = 277/328 (84.45%), Query Frame = 0 
Query:   73 GNSDLDKCARALDLSAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQRDG--GERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVEDWSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLSSSPL 399
            G+    +   ALDLSAAA+G TVEEVL LA +P   VA+AL +F GL+DC PHAE L RLHHLNFII+QGVYSF EA+ LI+ Q +FLEM FS VY+D DL+V+NKPSDVRMDVPQR G  G+RKWP EFTCSDWLD PGL++PPL+KKRFCHNLDSATSGILCVARNQAAAARVV+LF++R V+KEYLAVVFGHV++   S +T+FIDAPIEKDP SDFRMRIGP+GK+AQTQV VL +G+L LQGPH+NAPVSKL LKPITGRRHQLRVHT+SLG+GIVGD+YV DW++YR+MLHAHKL LP++ +K L L T DPF  L+S  PL
Sbjct:   92 GHVPTTESLHALDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADS-DTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALISPQPL 418
The following BLAST results are available for this feature:
BLAST of NO01G03000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29222.13.400e-13271.95pseudouridine synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03000NO01G03000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03000.1NO01G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03000.1.cds1NO01G03000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03000.1.cds2NO01G03000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03000.1 ID=NO01G03000.1|Name=NO01G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
ATGTCGCATTTTCCAAGGTGCTTTGTTGTGGTAAACGTCCTCCTGCTTTT
GCGTCATCCGGCCACTGCGTTCATTCCACGTGCCGACCACCACTGCAGCA
GCGAGCTCAAGCACTCAGGATTAAAGGCATGCCAGCTCCATACTGCCCAC
GTTTCTTGGCTGTATGATTTCACACATGGTCCAGAACCTTTCGTTCTCCA
AGCACAGGCCAGAGATGGCAATTCTGATCTCGATAAGTGCGCTCGTGCCC
TAGACTTATCGGCTGCAGCCCAAGGCTCGACGGTGGAAGAGGTATTGCAA
TTGGCGGGCGTGCCGTCCAGAAACGTGGCGCGGGCTTTAGAAGCCTTTAT
CGGCTTGCAGGACTGCGATCCACATGCCGAAACACTCCGCCGGCTGCACC
ATCTCAATTTTATTATAGAGCAAGGCGTCTACTCCTTTGAGGAAGCAATG
GAGCTGATCTCCACGCAATCGCGCTTTTTGGAAATGAATTTCTCATTTGT
TTATAAAGATGGCGATCTTCTTGTCATGAACAAGCCGAGCGACGTGCGCA
TGGACGTGCCGCAGCGGGACGGCGGAGAAAGGAAGTGGCCGACAGAATTC
ACCTGCTCCGATTGGCTCGACATACCGGGCCTGGTCGACCCTCCTCTTGA
TAAAAAGCGTTTCTGCCACAACTTGGACTCAGCCACTTCGGGCATACTGT
GCGTTGCTCGCAATCAGGCAGCCGCTGCCAGGGTTGTGGATCTTTTTGCG
GAGCGGAAGGTAAAAAAAGAATATTTAGCAGTAGTTTTTGGCCATGTAGC
CGCACCCCCGGGTAGCAACAACACAATTTTCATCGACGCGCCCATCGAAA
AAGACCCGACAAGCGACTTCAGAATGCGCATCGGCCCCGACGGAAAGGCG
GCCCAAACACAAGTACACGTTCTAGGTCAAGGCTATCTCACTCTGCAAGG
ACCTCATTACAATGCCCCTGTTTCCAAGCTTCTACTCAAGCCGATCACTG
GAAGAAGACATCAGTTGAGGGTCCACACCCTGTCGCTAGGACACGGAATT
GTCGGTGATTCCTACGTGGAGGACTGGTCGACGTATCGGTTGATGCTCCA
CGCGCACAAACTGTTTTTGCCCATCTCTGCCGAAAAACAATTGCACTTGG
AGACGCCAGACCCTTTCATAGGGCTCTTATCCTCTTCTCCGCTCGGTGAA
GGCTAG
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protein sequence of NO01G03000.1

>NO01G03000.1-protein ID=NO01G03000.1-protein|Name=NO01G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MSHFPRCFVVVNVLLLLRHPATAFIPRADHHCSSELKHSGLKACQLHTAH
VSWLYDFTHGPEPFVLQAQARDGNSDLDKCARALDLSAAAQGSTVEEVLQ
LAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAM
ELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEF
TCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFA
ERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKA
AQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGI
VGDSYVEDWSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLSSSPLGE
G*
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mRNA from alignment at chr1:789363..790660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03000.1 ID=NO01G03000.1|Name=NO01G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp|location=Sequence derived from alignment at chr1:789363..790660+ (Nannochloropsis oceanica)
ATGTCGCATTTTCCAAGGTGCTTTGTTGTGGTAAACGTCCTCCTGCTTTT
GCGTCATCCGGCCACTGCGTTCATTCCACGTGCCGACCACCACTGCAGCA
GCGAGCTCAAGCACTCAGGATTAAAGGCATGCCAGCTCCATACTGCCCAC
GTTTCTTGGCTGTATGATTTCACACATGGTCCAGAACCTTTCGTTCTCCA
AGCACAGGCCAGAGATGGCAATTCTGATCTCGATAAGTGCGCTCGTGCCC
TAGACTTATCGGCTGCAGCCCAAGGCTCGACGGTGGAAGAGGTATTGCAA
TTGGCGGGCGTGCCGTCCAGAAACGTGGCGCGGGCTTTAGAAGCCTTTAT
CGGCTTGCAGGACTGCGATCCACATGCCGAAACACTCCGCCGGCTGCACC
ATCTCAATTTTATTATAGAGCAAGGCGTCTACTCCTTTGAGGAAGCAATG
GAGCTGATCTCCACGCAATCGCGCTTTTTGGAAATGAATTTCTCATTTGT
TTATAAAGATGGCGATCTTCTTGTCATGAACAAGCCGAGCGACGTGCGCA
TGGACGTGCCGCAGCGGGACGGCGGAGAAAGGAAGTGGCCGACAGAATTC
ACCTGCTCCGATTGGCTCGACATACCGGGCCTGGTCGACCCTCCTCTTGA
TAAAAAGCGTTTCTGCCACAACTTGGACTCAGCCACTTCGGGCATACTGT
GCGTTGCTCGCAATCAGGCAGCCGCTGCCAGGGTTGTGGATCTTTTTGCG
GAGCGGAAGGTAAAAAAAGAATGTACGTTTGTTTTTCATCTCTCTTGTCT
TGCCTCTCTTATGCACTCAATCCCACCAAGCGCACACACACCCATCCACC
CACCAAATGGACAGATTTAGCAGTAGTTTTTGGCCATGTAGCCGCACCCC
CGGGTAGCAACAACACAATTTTCATCGACGCGCCCATCGAAAAAGACCCG
ACAAGCGACTTCAGAATGCGCATCGGCCCCGACGGAAAGGCGGCCCAAAC
ACAAGTACACGTTCTAGGTCAAGGCTATCTCACTCTGCAAGGACCTCATT
ACAATGCCCCTGTTTCCAAGCTTCTACTCAAGCCGATCACTGGAAGAAGA
CATCAGTTGAGGGTCCACACCCTGTCGCTAGGACACGGAATTGTCGGTGA
TTCCTACGTGGAGGACTGGTCGACGTATCGGTTGATGCTCCACGCGCACA
AACTGTTTTTGCCCATCTCTGCCGAAAAACAATTGCACTTGGAGACGCCA
GACCCTTTCATAGGGCTCTTATCCTCTTCTCCGCTCGGTGAAGGCTAG
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Coding sequence (CDS) from alignment at chr1:789363..790660+

>NO01G03000.1 ID=NO01G03000.1|Name=NO01G03000.1|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at chr1:789363..790660+ (Nannochloropsis oceanica)
ATGTCGCATTTTCCAAGGTGCTTTGTTGTGGTAAACGTCCTCCTGCTTTT
GCGTCATCCGGCCACTGCGTTCATTCCACGTGCCGACCACCACTGCAGCA
GCGAGCTCAAGCACTCAGGATTAAAGGCATGCCAGCTCCATACTGCCCAC
GTTTCTTGGCTGTATGATTTCACACATGGTCCAGAACCTTTCGTTCTCCA
AGCACAGGCCAGAGATGGCAATTCTGATCTCGATAAGTGCGCTCGTGCCC
TAGACTTATCGGCTGCAGCCCAAGGCTCGACGGTGGAAGAGGTATTGCAA
TTGGCGGGCGTGCCGTCCAGAAACGTGGCGCGGGCTTTAGAAGCCTTTAT
CGGCTTGCAGGACTGCGATCCACATGCCGAAACACTCCGCCGGCTGCACC
ATCTCAATTTTATTATAGAGCAAGGCGTCTACTCCTTTGAGGAAGCAATG
GAGCTGATCTCCACGCAATCGCGCTTTTTGGAAATGAATTTCTCATTTGT
TTATAAAGATGGCGATCTTCTTGTCATGAACAAGCCGAGCGACGTGCGCA
TGGACGTGCCGCAGCGGGACGGCGGAGAAAGGAAGTGGCCGACAGAATTC
ACCTGCTCCGATTGGCTCGACATACCGGGCCTGGTCGACCCTCCTCTTGA
TAAAAAGCGTTTCTGCCACAACTTGGACTCAGCCACTTCGGGCATACTGT
GCGTTGCTCGCAATCAGGCAGCCGCTGCCAGGGTTGTGGATCTTTTTGCG
GAGCGGAAGGTAAAAAAAGAATATTTAGCAGTAGTTTTTGGCCATGTAGC
CGCACCCCCGGGTAGCAACAACACAATTTTCATCGACGCGCCCATCGAAA
AAGACCCGACAAGCGACTTCAGAATGCGCATCGGCCCCGACGGAAAGGCG
GCCCAAACACAAGTACACGTTCTAGGTCAAGGCTATCTCACTCTGCAAGG
ACCTCATTACAATGCCCCTGTTTCCAAGCTTCTACTCAAGCCGATCACTG
GAAGAAGACATCAGTTGAGGGTCCACACCCTGTCGCTAGGACACGGAATT
GTCGGTGATTCCTACGTGGAGGACTGGTCGACGTATCGGTTGATGCTCCA
CGCGCACAAACTGTTTTTGCCCATCTCTGCCGAAAAACAATTGCACTTGG
AGACGCCAGACCCTTTCATAGGGCTCTTATCCTCTTCTCCGCTCGGTGAA
GGCTAG
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Synonyms
Publications